Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00825

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00824 and MPMX20_00825 are separated by 40 nucleotidesMPMX20_00825 and MPMX20_00826 are separated by 57 nucleotidesMPMX20_00826 and MPMX20_00827 are separated by 11 nucleotides MPMX20_00824: MPMX20_00824 - hypothetical protein, at 866,762 to 868,009 _00824 MPMX20_00825: MPMX20_00825 - Aspartate 1-decarboxylase, at 868,050 to 868,430 _00825 MPMX20_00826: MPMX20_00826 - Pantothenate synthetase, at 868,488 to 869,339 _00826 MPMX20_00827: MPMX20_00827 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 869,351 to 870,142 _00827 Position (kb) 868 869Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 867.091 kb on - strand, within MPMX20_00824at 867.157 kb on + strand, within MPMX20_00824at 867.162 kb on + strand, within MPMX20_00824at 867.170 kb on - strand, within MPMX20_00824at 867.177 kb on + strand, within MPMX20_00824at 867.216 kb on - strand, within MPMX20_00824at 867.261 kb on + strand, within MPMX20_00824at 867.269 kb on - strand, within MPMX20_00824at 867.325 kb on + strand, within MPMX20_00824at 867.383 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.406 kb on + strand, within MPMX20_00824at 867.414 kb on - strand, within MPMX20_00824at 867.414 kb on - strand, within MPMX20_00824at 867.414 kb on - strand, within MPMX20_00824at 867.414 kb on - strand, within MPMX20_00824at 867.414 kb on - strand, within MPMX20_00824at 867.421 kb on + strand, within MPMX20_00824at 867.434 kb on + strand, within MPMX20_00824at 867.441 kb on - strand, within MPMX20_00824at 867.489 kb on + strand, within MPMX20_00824at 867.625 kb on + strand, within MPMX20_00824at 867.625 kb on + strand, within MPMX20_00824at 867.652 kb on + strand, within MPMX20_00824at 867.660 kb on - strand, within MPMX20_00824at 867.660 kb on - strand, within MPMX20_00824at 867.789 kb on + strand, within MPMX20_00824at 868.005 kb on + strandat 868.010 kb on + strandat 868.013 kb on - strandat 868.018 kb on - strandat 868.021 kb on + strandat 868.024 kb on + strandat 868.031 kb on + strandat 868.031 kb on + strandat 868.031 kb on + strandat 868.039 kb on - strandat 868.046 kb on - strandat 868.264 kb on + strand, within MPMX20_00825at 868.278 kb on - strand, within MPMX20_00825at 868.381 kb on - strand, within MPMX20_00825at 868.403 kb on + strandat 868.427 kb on + strandat 868.469 kb on + strandat 868.479 kb on + strandat 868.480 kb on + strandat 868.670 kb on + strand, within MPMX20_00826at 868.678 kb on - strand, within MPMX20_00826at 868.714 kb on + strand, within MPMX20_00826at 868.804 kb on + strand, within MPMX20_00826at 868.906 kb on + strand, within MPMX20_00826at 868.921 kb on + strand, within MPMX20_00826at 868.921 kb on + strand, within MPMX20_00826at 868.929 kb on - strand, within MPMX20_00826at 869.001 kb on - strand, within MPMX20_00826at 869.017 kb on - strand, within MPMX20_00826at 869.027 kb on + strand, within MPMX20_00826at 869.184 kb on - strand, within MPMX20_00826at 869.250 kb on - strand, within MPMX20_00826at 869.339 kb on - strandat 869.390 kb on - strandat 869.400 kb on + strandat 869.408 kb on + strandat 869.408 kb on - strandat 869.421 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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867,091 - MPMX20_00824 0.26 -1.0
867,157 + MPMX20_00824 0.32 +0.0
867,162 + MPMX20_00824 0.32 -2.5
867,170 - MPMX20_00824 0.33 +0.5
867,177 + MPMX20_00824 0.33 -0.6
867,216 - MPMX20_00824 0.36 -0.1
867,261 + MPMX20_00824 0.40 +0.4
867,269 - MPMX20_00824 0.41 -1.5
867,325 + MPMX20_00824 0.45 -1.5
867,383 + MPMX20_00824 0.50 -3.4
867,406 + MPMX20_00824 0.52 -0.0
867,406 + MPMX20_00824 0.52 -0.1
867,406 + MPMX20_00824 0.52 +0.7
867,406 + MPMX20_00824 0.52 +0.1
867,406 + MPMX20_00824 0.52 -1.1
867,406 + MPMX20_00824 0.52 -0.7
867,406 + MPMX20_00824 0.52 -3.1
867,406 + MPMX20_00824 0.52 -0.9
867,406 + MPMX20_00824 0.52 -0.8
867,406 + MPMX20_00824 0.52 +0.4
867,414 - MPMX20_00824 0.52 -1.7
867,414 - MPMX20_00824 0.52 +0.5
867,414 - MPMX20_00824 0.52 +0.0
867,414 - MPMX20_00824 0.52 +0.5
867,414 - MPMX20_00824 0.52 +1.1
867,421 + MPMX20_00824 0.53 +0.5
867,434 + MPMX20_00824 0.54 -1.5
867,441 - MPMX20_00824 0.54 -1.4
867,489 + MPMX20_00824 0.58 -3.5
867,625 + MPMX20_00824 0.69 -3.2
867,625 + MPMX20_00824 0.69 +0.6
867,652 + MPMX20_00824 0.71 -2.3
867,660 - MPMX20_00824 0.72 +0.5
867,660 - MPMX20_00824 0.72 +1.5
867,789 + MPMX20_00824 0.82 -1.6
868,005 + -0.3
868,010 + -1.0
868,013 - -0.2
868,018 - -1.2
868,021 + +1.5
868,024 + -0.8
868,031 + -0.0
868,031 + -3.2
868,031 + -2.4
868,039 - +0.2
868,046 - -1.4
868,264 + MPMX20_00825 0.56 +0.5
868,278 - MPMX20_00825 0.60 -0.1
868,381 - MPMX20_00825 0.87 -1.3
868,403 + +2.9
868,427 + -0.0
868,469 + -0.4
868,479 + -0.9
868,480 + -1.2
868,670 + MPMX20_00826 0.21 -2.8
868,678 - MPMX20_00826 0.22 +1.3
868,714 + MPMX20_00826 0.27 -0.1
868,804 + MPMX20_00826 0.37 -2.2
868,906 + MPMX20_00826 0.49 +2.6
868,921 + MPMX20_00826 0.51 -0.8
868,921 + MPMX20_00826 0.51 +0.8
868,929 - MPMX20_00826 0.52 +1.1
869,001 - MPMX20_00826 0.60 -2.7
869,017 - MPMX20_00826 0.62 -0.4
869,027 + MPMX20_00826 0.63 -1.2
869,184 - MPMX20_00826 0.82 -2.1
869,250 - MPMX20_00826 0.89 -0.9
869,339 - +2.1
869,390 - -3.3
869,400 + +0.7
869,408 + +0.9
869,408 - -0.5
869,421 + -2.1

Or see this region's nucleotide sequence