Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00812 and MPMX20_00813 are separated by 188 nucleotides MPMX20_00813 and MPMX20_00814 are separated by 31 nucleotides MPMX20_00814 and MPMX20_00815 are separated by 0 nucleotides
MPMX20_00812: MPMX20_00812 - Aconitate hydratase B, at 853,343 to 855,940
_00812
MPMX20_00813: MPMX20_00813 - hypothetical protein, at 856,129 to 856,491
_00813
MPMX20_00814: MPMX20_00814 - S-adenosylmethionine decarboxylase proenzyme, at 856,523 to 857,317
_00814
MPMX20_00815: MPMX20_00815 - Polyamine aminopropyltransferase, at 857,318 to 858,187
_00815
Position (kb) 856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 855.180 kb on - strand, within MPMX20_00812 at 855.283 kb on - strand, within MPMX20_00812 at 855.321 kb on - strand, within MPMX20_00812 at 855.383 kb on + strand, within MPMX20_00812 at 855.596 kb on + strand, within MPMX20_00812 at 855.621 kb on + strand, within MPMX20_00812 at 855.655 kb on + strand, within MPMX20_00812 at 855.655 kb on + strand, within MPMX20_00812 at 855.655 kb on + strand, within MPMX20_00812 at 855.718 kb on - strand at 855.741 kb on + strand at 855.817 kb on + strand at 855.817 kb on + strand at 855.953 kb on + strand at 855.987 kb on + strand at 855.987 kb on + strand at 855.987 kb on + strand at 855.995 kb on - strand at 855.995 kb on - strand at 856.005 kb on - strand at 856.009 kb on + strand at 856.011 kb on - strand at 856.011 kb on - strand at 856.026 kb on + strand at 856.026 kb on + strand at 856.026 kb on + strand at 856.034 kb on - strand at 856.034 kb on - strand at 856.034 kb on - strand at 856.057 kb on + strand at 856.127 kb on - strand at 856.198 kb on + strand, within MPMX20_00813 at 856.342 kb on - strand, within MPMX20_00813 at 856.401 kb on - strand, within MPMX20_00813 at 856.401 kb on - strand, within MPMX20_00813 at 856.401 kb on - strand, within MPMX20_00813 at 856.406 kb on + strand, within MPMX20_00813 at 856.465 kb on + strand at 856.494 kb on + strand at 856.564 kb on + strand at 856.572 kb on - strand at 856.577 kb on - strand at 856.579 kb on + strand at 856.592 kb on - strand at 856.615 kb on - strand, within MPMX20_00814 at 856.633 kb on - strand, within MPMX20_00814 at 856.748 kb on + strand, within MPMX20_00814 at 856.758 kb on + strand, within MPMX20_00814 at 856.791 kb on + strand, within MPMX20_00814 at 856.804 kb on + strand, within MPMX20_00814 at 856.804 kb on + strand, within MPMX20_00814 at 856.866 kb on - strand, within MPMX20_00814 at 856.909 kb on - strand, within MPMX20_00814 at 856.959 kb on + strand, within MPMX20_00814 at 856.976 kb on + strand, within MPMX20_00814 at 856.976 kb on + strand, within MPMX20_00814 at 857.007 kb on + strand, within MPMX20_00814 at 857.021 kb on + strand, within MPMX20_00814 at 857.055 kb on - strand, within MPMX20_00814 at 857.055 kb on - strand, within MPMX20_00814 at 857.055 kb on - strand, within MPMX20_00814 at 857.057 kb on + strand, within MPMX20_00814 at 857.062 kb on + strand, within MPMX20_00814 at 857.070 kb on - strand, within MPMX20_00814 at 857.192 kb on - strand, within MPMX20_00814 at 857.197 kb on - strand, within MPMX20_00814 at 857.288 kb on + strand at 857.302 kb on + strand at 857.302 kb on - strand at 857.310 kb on - strand at 857.329 kb on + strand at 857.366 kb on + strand at 857.374 kb on - strand at 857.374 kb on - strand at 857.378 kb on + strand at 857.417 kb on + strand, within MPMX20_00815 at 857.440 kb on - strand, within MPMX20_00815 at 857.468 kb on + strand, within MPMX20_00815
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 855,180 - MPMX20_00812 0.71 -1.3 855,283 - MPMX20_00812 0.75 +0.9 855,321 - MPMX20_00812 0.76 -0.5 855,383 + MPMX20_00812 0.79 -0.1 855,596 + MPMX20_00812 0.87 -0.7 855,621 + MPMX20_00812 0.88 -1.9 855,655 + MPMX20_00812 0.89 -0.5 855,655 + MPMX20_00812 0.89 -1.0 855,655 + MPMX20_00812 0.89 -0.8 855,718 - +0.2 855,741 + +0.9 855,817 + -1.0 855,817 + -2.1 855,953 + +0.9 855,987 + +0.3 855,987 + +0.6 855,987 + -1.8 855,995 - -0.7 855,995 - +0.6 856,005 - +2.2 856,009 + -0.8 856,011 - -0.1 856,011 - -1.7 856,026 + -1.3 856,026 + +0.4 856,026 + -2.2 856,034 - +1.5 856,034 - +1.5 856,034 - -2.9 856,057 + -0.1 856,127 - +1.8 856,198 + MPMX20_00813 0.19 +0.5 856,342 - MPMX20_00813 0.59 +0.2 856,401 - MPMX20_00813 0.75 -0.1 856,401 - MPMX20_00813 0.75 -0.5 856,401 - MPMX20_00813 0.75 -2.2 856,406 + MPMX20_00813 0.76 -2.7 856,465 + +3.1 856,494 + -1.7 856,564 + +0.0 856,572 - -0.5 856,577 - +0.3 856,579 + -0.1 856,592 - +0.9 856,615 - MPMX20_00814 0.12 -0.1 856,633 - MPMX20_00814 0.14 -0.1 856,748 + MPMX20_00814 0.28 +0.5 856,758 + MPMX20_00814 0.30 -2.1 856,791 + MPMX20_00814 0.34 -1.8 856,804 + MPMX20_00814 0.35 +1.5 856,804 + MPMX20_00814 0.35 -2.4 856,866 - MPMX20_00814 0.43 -1.9 856,909 - MPMX20_00814 0.49 -1.5 856,959 + MPMX20_00814 0.55 -1.0 856,976 + MPMX20_00814 0.57 -0.7 856,976 + MPMX20_00814 0.57 +0.2 857,007 + MPMX20_00814 0.61 -0.8 857,021 + MPMX20_00814 0.63 +1.5 857,055 - MPMX20_00814 0.67 -0.1 857,055 - MPMX20_00814 0.67 -0.7 857,055 - MPMX20_00814 0.67 +0.9 857,057 + MPMX20_00814 0.67 -1.0 857,062 + MPMX20_00814 0.68 +0.3 857,070 - MPMX20_00814 0.69 +0.0 857,192 - MPMX20_00814 0.84 -0.5 857,197 - MPMX20_00814 0.85 +1.7 857,288 + +0.5 857,302 + -0.8 857,302 - -2.0 857,310 - +0.0 857,329 + -0.7 857,366 + +1.3 857,374 - +0.0 857,374 - +0.6 857,378 + +1.0 857,417 + MPMX20_00815 0.11 +0.6 857,440 - MPMX20_00815 0.14 -1.6 857,468 + MPMX20_00815 0.17 -1.3
Or see this region's nucleotide sequence