Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00813

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00812 and MPMX20_00813 are separated by 188 nucleotidesMPMX20_00813 and MPMX20_00814 are separated by 31 nucleotidesMPMX20_00814 and MPMX20_00815 are separated by 0 nucleotides MPMX20_00812: MPMX20_00812 - Aconitate hydratase B, at 853,343 to 855,940 _00812 MPMX20_00813: MPMX20_00813 - hypothetical protein, at 856,129 to 856,491 _00813 MPMX20_00814: MPMX20_00814 - S-adenosylmethionine decarboxylase proenzyme, at 856,523 to 857,317 _00814 MPMX20_00815: MPMX20_00815 - Polyamine aminopropyltransferase, at 857,318 to 858,187 _00815 Position (kb) 856 857Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 855.180 kb on - strand, within MPMX20_00812at 855.283 kb on - strand, within MPMX20_00812at 855.321 kb on - strand, within MPMX20_00812at 855.383 kb on + strand, within MPMX20_00812at 855.596 kb on + strand, within MPMX20_00812at 855.621 kb on + strand, within MPMX20_00812at 855.655 kb on + strand, within MPMX20_00812at 855.655 kb on + strand, within MPMX20_00812at 855.655 kb on + strand, within MPMX20_00812at 855.718 kb on - strandat 855.741 kb on + strandat 855.817 kb on + strandat 855.817 kb on + strandat 855.953 kb on + strandat 855.987 kb on + strandat 855.987 kb on + strandat 855.987 kb on + strandat 855.995 kb on - strandat 855.995 kb on - strandat 856.005 kb on - strandat 856.009 kb on + strandat 856.011 kb on - strandat 856.011 kb on - strandat 856.026 kb on + strandat 856.026 kb on + strandat 856.026 kb on + strandat 856.034 kb on - strandat 856.034 kb on - strandat 856.034 kb on - strandat 856.057 kb on + strandat 856.127 kb on - strandat 856.198 kb on + strand, within MPMX20_00813at 856.342 kb on - strand, within MPMX20_00813at 856.401 kb on - strand, within MPMX20_00813at 856.401 kb on - strand, within MPMX20_00813at 856.401 kb on - strand, within MPMX20_00813at 856.406 kb on + strand, within MPMX20_00813at 856.465 kb on + strandat 856.494 kb on + strandat 856.564 kb on + strandat 856.572 kb on - strandat 856.577 kb on - strandat 856.579 kb on + strandat 856.592 kb on - strandat 856.615 kb on - strand, within MPMX20_00814at 856.633 kb on - strand, within MPMX20_00814at 856.748 kb on + strand, within MPMX20_00814at 856.758 kb on + strand, within MPMX20_00814at 856.791 kb on + strand, within MPMX20_00814at 856.804 kb on + strand, within MPMX20_00814at 856.804 kb on + strand, within MPMX20_00814at 856.866 kb on - strand, within MPMX20_00814at 856.909 kb on - strand, within MPMX20_00814at 856.959 kb on + strand, within MPMX20_00814at 856.976 kb on + strand, within MPMX20_00814at 856.976 kb on + strand, within MPMX20_00814at 857.007 kb on + strand, within MPMX20_00814at 857.021 kb on + strand, within MPMX20_00814at 857.055 kb on - strand, within MPMX20_00814at 857.055 kb on - strand, within MPMX20_00814at 857.055 kb on - strand, within MPMX20_00814at 857.057 kb on + strand, within MPMX20_00814at 857.062 kb on + strand, within MPMX20_00814at 857.070 kb on - strand, within MPMX20_00814at 857.192 kb on - strand, within MPMX20_00814at 857.197 kb on - strand, within MPMX20_00814at 857.288 kb on + strandat 857.302 kb on + strandat 857.302 kb on - strandat 857.310 kb on - strandat 857.329 kb on + strandat 857.366 kb on + strandat 857.374 kb on - strandat 857.374 kb on - strandat 857.378 kb on + strandat 857.417 kb on + strand, within MPMX20_00815at 857.440 kb on - strand, within MPMX20_00815at 857.468 kb on + strand, within MPMX20_00815

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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855,180 - MPMX20_00812 0.71 -1.3
855,283 - MPMX20_00812 0.75 +0.9
855,321 - MPMX20_00812 0.76 -0.5
855,383 + MPMX20_00812 0.79 -0.1
855,596 + MPMX20_00812 0.87 -0.7
855,621 + MPMX20_00812 0.88 -1.9
855,655 + MPMX20_00812 0.89 -0.5
855,655 + MPMX20_00812 0.89 -1.0
855,655 + MPMX20_00812 0.89 -0.8
855,718 - +0.2
855,741 + +0.9
855,817 + -1.0
855,817 + -2.1
855,953 + +0.9
855,987 + +0.3
855,987 + +0.6
855,987 + -1.8
855,995 - -0.7
855,995 - +0.6
856,005 - +2.2
856,009 + -0.8
856,011 - -0.1
856,011 - -1.7
856,026 + -1.3
856,026 + +0.4
856,026 + -2.2
856,034 - +1.5
856,034 - +1.5
856,034 - -2.9
856,057 + -0.1
856,127 - +1.8
856,198 + MPMX20_00813 0.19 +0.5
856,342 - MPMX20_00813 0.59 +0.2
856,401 - MPMX20_00813 0.75 -0.1
856,401 - MPMX20_00813 0.75 -0.5
856,401 - MPMX20_00813 0.75 -2.2
856,406 + MPMX20_00813 0.76 -2.7
856,465 + +3.1
856,494 + -1.7
856,564 + +0.0
856,572 - -0.5
856,577 - +0.3
856,579 + -0.1
856,592 - +0.9
856,615 - MPMX20_00814 0.12 -0.1
856,633 - MPMX20_00814 0.14 -0.1
856,748 + MPMX20_00814 0.28 +0.5
856,758 + MPMX20_00814 0.30 -2.1
856,791 + MPMX20_00814 0.34 -1.8
856,804 + MPMX20_00814 0.35 +1.5
856,804 + MPMX20_00814 0.35 -2.4
856,866 - MPMX20_00814 0.43 -1.9
856,909 - MPMX20_00814 0.49 -1.5
856,959 + MPMX20_00814 0.55 -1.0
856,976 + MPMX20_00814 0.57 -0.7
856,976 + MPMX20_00814 0.57 +0.2
857,007 + MPMX20_00814 0.61 -0.8
857,021 + MPMX20_00814 0.63 +1.5
857,055 - MPMX20_00814 0.67 -0.1
857,055 - MPMX20_00814 0.67 -0.7
857,055 - MPMX20_00814 0.67 +0.9
857,057 + MPMX20_00814 0.67 -1.0
857,062 + MPMX20_00814 0.68 +0.3
857,070 - MPMX20_00814 0.69 +0.0
857,192 - MPMX20_00814 0.84 -0.5
857,197 - MPMX20_00814 0.85 +1.7
857,288 + +0.5
857,302 + -0.8
857,302 - -2.0
857,310 - +0.0
857,329 + -0.7
857,366 + +1.3
857,374 - +0.0
857,374 - +0.6
857,378 + +1.0
857,417 + MPMX20_00815 0.11 +0.6
857,440 - MPMX20_00815 0.14 -1.6
857,468 + MPMX20_00815 0.17 -1.3

Or see this region's nucleotide sequence