Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00699 and MPMX20_00700 are separated by 55 nucleotides MPMX20_00700 and MPMX20_00701 overlap by 10 nucleotides MPMX20_00701 and MPMX20_00702 are separated by 50 nucleotides
MPMX20_00699: MPMX20_00699 - Soluble lytic murein transglycosylase, at 720,087 to 722,024
_00699
MPMX20_00700: MPMX20_00700 - Trp operon repressor, at 722,080 to 722,409
_00700
MPMX20_00701: MPMX20_00701 - Inosine/xanthosine triphosphatase, at 722,400 to 722,915
_00701
MPMX20_00702: MPMX20_00702 - Adenosylcobalamin/alpha-ribazole phosphatase, at 722,966 to 723,613
_00702
Position (kb) 722
723 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 721.160 kb on + strand, within MPMX20_00699 at 721.272 kb on + strand, within MPMX20_00699 at 721.397 kb on + strand, within MPMX20_00699 at 721.415 kb on - strand, within MPMX20_00699 at 721.416 kb on - strand, within MPMX20_00699 at 721.422 kb on - strand, within MPMX20_00699 at 721.455 kb on + strand, within MPMX20_00699 at 721.487 kb on + strand, within MPMX20_00699 at 721.487 kb on + strand, within MPMX20_00699 at 721.495 kb on - strand, within MPMX20_00699 at 721.603 kb on - strand, within MPMX20_00699 at 721.683 kb on + strand, within MPMX20_00699 at 721.714 kb on + strand, within MPMX20_00699 at 721.725 kb on - strand, within MPMX20_00699 at 721.820 kb on + strand, within MPMX20_00699 at 721.820 kb on + strand, within MPMX20_00699 at 721.828 kb on - strand, within MPMX20_00699 at 721.830 kb on + strand, within MPMX20_00699 at 721.830 kb on + strand, within MPMX20_00699 at 721.872 kb on - strand at 721.882 kb on - strand at 721.943 kb on + strand at 721.944 kb on + strand at 721.999 kb on + strand at 722.009 kb on + strand at 722.017 kb on - strand at 722.149 kb on + strand, within MPMX20_00700 at 722.227 kb on + strand, within MPMX20_00700 at 722.232 kb on + strand, within MPMX20_00700 at 722.235 kb on - strand, within MPMX20_00700 at 722.235 kb on - strand, within MPMX20_00700 at 722.235 kb on - strand, within MPMX20_00700 at 722.248 kb on - strand, within MPMX20_00700 at 722.249 kb on + strand, within MPMX20_00700 at 722.281 kb on - strand, within MPMX20_00700 at 722.381 kb on + strand at 722.381 kb on + strand at 722.389 kb on - strand at 722.459 kb on + strand, within MPMX20_00701 at 722.606 kb on + strand, within MPMX20_00701 at 722.614 kb on - strand, within MPMX20_00701 at 722.623 kb on + strand, within MPMX20_00701 at 722.631 kb on - strand, within MPMX20_00701 at 722.631 kb on - strand, within MPMX20_00701 at 722.631 kb on - strand, within MPMX20_00701 at 722.631 kb on - strand, within MPMX20_00701 at 722.631 kb on - strand, within MPMX20_00701 at 722.633 kb on + strand, within MPMX20_00701 at 722.633 kb on + strand, within MPMX20_00701 at 722.659 kb on - strand, within MPMX20_00701 at 722.725 kb on + strand, within MPMX20_00701 at 722.725 kb on + strand, within MPMX20_00701 at 722.725 kb on + strand, within MPMX20_00701 at 722.794 kb on - strand, within MPMX20_00701 at 722.912 kb on + strand at 722.974 kb on + strand at 722.974 kb on + strand at 722.975 kb on - strand at 722.981 kb on - strand at 722.994 kb on + strand at 723.010 kb on - strand at 723.012 kb on - strand at 723.012 kb on - strand at 723.067 kb on - strand, within MPMX20_00702 at 723.079 kb on - strand, within MPMX20_00702 at 723.124 kb on - strand, within MPMX20_00702 at 723.137 kb on - strand, within MPMX20_00702 at 723.152 kb on + strand, within MPMX20_00702 at 723.172 kb on + strand, within MPMX20_00702 at 723.210 kb on + strand, within MPMX20_00702 at 723.214 kb on + strand, within MPMX20_00702 at 723.214 kb on + strand, within MPMX20_00702 at 723.214 kb on + strand, within MPMX20_00702 at 723.214 kb on + strand, within MPMX20_00702 at 723.214 kb on + strand, within MPMX20_00702 at 723.214 kb on + strand, within MPMX20_00702 at 723.222 kb on - strand, within MPMX20_00702 at 723.222 kb on - strand, within MPMX20_00702 at 723.282 kb on - strand, within MPMX20_00702 at 723.286 kb on + strand, within MPMX20_00702 at 723.286 kb on + strand, within MPMX20_00702 at 723.294 kb on - strand, within MPMX20_00702
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 721,160 + MPMX20_00699 0.55 -3.3 721,272 + MPMX20_00699 0.61 +1.5 721,397 + MPMX20_00699 0.68 +0.9 721,415 - MPMX20_00699 0.69 -1.0 721,416 - MPMX20_00699 0.69 +0.6 721,422 - MPMX20_00699 0.69 +0.9 721,455 + MPMX20_00699 0.71 +1.4 721,487 + MPMX20_00699 0.72 +0.5 721,487 + MPMX20_00699 0.72 -0.1 721,495 - MPMX20_00699 0.73 +2.3 721,603 - MPMX20_00699 0.78 -0.2 721,683 + MPMX20_00699 0.82 +0.6 721,714 + MPMX20_00699 0.84 +0.2 721,725 - MPMX20_00699 0.85 +1.7 721,820 + MPMX20_00699 0.89 -0.1 721,820 + MPMX20_00699 0.89 -0.4 721,828 - MPMX20_00699 0.90 +0.7 721,830 + MPMX20_00699 0.90 +0.8 721,830 + MPMX20_00699 0.90 -1.6 721,872 - +1.0 721,882 - -1.5 721,943 + +0.7 721,944 + +0.9 721,999 + +0.0 722,009 + -3.2 722,017 - +1.5 722,149 + MPMX20_00700 0.21 -0.5 722,227 + MPMX20_00700 0.45 +1.5 722,232 + MPMX20_00700 0.46 +0.9 722,235 - MPMX20_00700 0.47 -0.8 722,235 - MPMX20_00700 0.47 -0.3 722,235 - MPMX20_00700 0.47 -1.2 722,248 - MPMX20_00700 0.51 -1.5 722,249 + MPMX20_00700 0.51 -1.0 722,281 - MPMX20_00700 0.61 +0.2 722,381 + +0.9 722,381 + -1.4 722,389 - +1.5 722,459 + MPMX20_00701 0.11 -0.0 722,606 + MPMX20_00701 0.40 +0.3 722,614 - MPMX20_00701 0.41 -2.4 722,623 + MPMX20_00701 0.43 -2.1 722,631 - MPMX20_00701 0.45 -0.3 722,631 - MPMX20_00701 0.45 -1.7 722,631 - MPMX20_00701 0.45 +0.9 722,631 - MPMX20_00701 0.45 +0.5 722,631 - MPMX20_00701 0.45 -3.1 722,633 + MPMX20_00701 0.45 -0.3 722,633 + MPMX20_00701 0.45 -2.3 722,659 - MPMX20_00701 0.50 -0.0 722,725 + MPMX20_00701 0.63 +0.2 722,725 + MPMX20_00701 0.63 +0.9 722,725 + MPMX20_00701 0.63 -2.4 722,794 - MPMX20_00701 0.76 -1.8 722,912 + +1.5 722,974 + +1.3 722,974 + +0.2 722,975 - -1.1 722,981 - +1.2 722,994 + +0.9 723,010 - -0.8 723,012 - -2.0 723,012 - -0.4 723,067 - MPMX20_00702 0.16 -1.7 723,079 - MPMX20_00702 0.17 -3.1 723,124 - MPMX20_00702 0.24 +2.8 723,137 - MPMX20_00702 0.26 -3.0 723,152 + MPMX20_00702 0.29 +0.5 723,172 + MPMX20_00702 0.32 -1.8 723,210 + MPMX20_00702 0.38 -0.9 723,214 + MPMX20_00702 0.38 +1.5 723,214 + MPMX20_00702 0.38 -0.0 723,214 + MPMX20_00702 0.38 +0.9 723,214 + MPMX20_00702 0.38 -2.3 723,214 + MPMX20_00702 0.38 -0.8 723,214 + MPMX20_00702 0.38 -1.7 723,222 - MPMX20_00702 0.40 -1.7 723,222 - MPMX20_00702 0.40 -0.7 723,282 - MPMX20_00702 0.49 -0.2 723,286 + MPMX20_00702 0.49 -1.1 723,286 + MPMX20_00702 0.49 -2.7 723,294 - MPMX20_00702 0.51 -0.7
Or see this region's nucleotide sequence