Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00620

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00618 and MPMX20_00619 are separated by 135 nucleotidesMPMX20_00619 and MPMX20_00620 overlap by 1 nucleotidesMPMX20_00620 and MPMX20_00621 overlap by 11 nucleotides MPMX20_00618: MPMX20_00618 - hypothetical protein, at 643,346 to 644,041 _00618 MPMX20_00619: MPMX20_00619 - Transcriptional regulator SlyA, at 644,177 to 644,647 _00619 MPMX20_00620: MPMX20_00620 - Inner membrane protein YibH, at 644,647 to 645,711 _00620 MPMX20_00621: MPMX20_00621 - hypothetical protein, at 645,701 to 646,777 _00621 Position (kb) 644 645 646Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 643.763 kb on + strand, within MPMX20_00618at 643.788 kb on + strand, within MPMX20_00618at 643.788 kb on + strand, within MPMX20_00618at 643.788 kb on + strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.812 kb on - strand, within MPMX20_00618at 643.812 kb on - strand, within MPMX20_00618at 643.817 kb on - strand, within MPMX20_00618at 643.822 kb on + strand, within MPMX20_00618at 643.878 kb on + strand, within MPMX20_00618at 643.878 kb on + strand, within MPMX20_00618at 643.886 kb on - strand, within MPMX20_00618at 644.192 kb on - strandat 644.280 kb on + strand, within MPMX20_00619at 644.280 kb on + strand, within MPMX20_00619at 644.287 kb on - strand, within MPMX20_00619at 644.367 kb on + strand, within MPMX20_00619at 644.367 kb on + strand, within MPMX20_00619at 644.367 kb on - strand, within MPMX20_00619at 644.402 kb on - strand, within MPMX20_00619at 644.402 kb on - strand, within MPMX20_00619at 644.482 kb on + strand, within MPMX20_00619at 644.531 kb on - strand, within MPMX20_00619at 644.624 kb on + strandat 644.635 kb on - strandat 644.675 kb on + strandat 644.675 kb on + strandat 644.681 kb on + strandat 644.683 kb on - strandat 644.683 kb on - strandat 644.683 kb on - strandat 644.683 kb on - strandat 644.689 kb on - strandat 644.689 kb on - strandat 644.750 kb on + strandat 644.758 kb on - strand, within MPMX20_00620at 644.774 kb on + strand, within MPMX20_00620at 644.808 kb on + strand, within MPMX20_00620at 644.841 kb on + strand, within MPMX20_00620at 644.843 kb on - strand, within MPMX20_00620at 644.871 kb on + strand, within MPMX20_00620at 644.879 kb on - strand, within MPMX20_00620at 644.895 kb on + strand, within MPMX20_00620at 644.903 kb on - strand, within MPMX20_00620at 644.976 kb on - strand, within MPMX20_00620at 644.976 kb on - strand, within MPMX20_00620at 644.976 kb on - strand, within MPMX20_00620at 644.997 kb on - strand, within MPMX20_00620at 645.039 kb on + strand, within MPMX20_00620at 645.039 kb on + strand, within MPMX20_00620at 645.047 kb on - strand, within MPMX20_00620at 645.091 kb on + strand, within MPMX20_00620at 645.137 kb on + strand, within MPMX20_00620at 645.137 kb on + strand, within MPMX20_00620at 645.145 kb on - strand, within MPMX20_00620at 645.145 kb on - strand, within MPMX20_00620at 645.145 kb on - strand, within MPMX20_00620at 645.190 kb on - strand, within MPMX20_00620at 645.237 kb on - strand, within MPMX20_00620at 645.246 kb on + strand, within MPMX20_00620at 645.285 kb on + strand, within MPMX20_00620at 645.298 kb on - strand, within MPMX20_00620at 645.417 kb on + strand, within MPMX20_00620at 645.530 kb on + strand, within MPMX20_00620at 645.571 kb on + strand, within MPMX20_00620at 645.579 kb on - strand, within MPMX20_00620at 645.579 kb on - strand, within MPMX20_00620at 645.622 kb on + strandat 645.628 kb on + strandat 645.683 kb on - strandat 645.696 kb on + strandat 645.696 kb on + strandat 645.732 kb on - strandat 645.739 kb on + strandat 645.841 kb on - strand, within MPMX20_00621at 645.856 kb on + strand, within MPMX20_00621at 645.857 kb on + strand, within MPMX20_00621at 645.857 kb on + strand, within MPMX20_00621at 645.950 kb on - strand, within MPMX20_00621at 646.073 kb on + strand, within MPMX20_00621at 646.078 kb on + strand, within MPMX20_00621at 646.089 kb on - strand, within MPMX20_00621at 646.091 kb on - strand, within MPMX20_00621at 646.104 kb on - strand, within MPMX20_00621at 646.128 kb on + strand, within MPMX20_00621at 646.161 kb on + strand, within MPMX20_00621at 646.287 kb on + strand, within MPMX20_00621at 646.425 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.433 kb on - strand, within MPMX20_00621at 646.438 kb on - strand, within MPMX20_00621at 646.438 kb on - strand, within MPMX20_00621at 646.438 kb on - strand, within MPMX20_00621at 646.462 kb on + strand, within MPMX20_00621at 646.469 kb on - strand, within MPMX20_00621at 646.485 kb on + strand, within MPMX20_00621at 646.488 kb on - strand, within MPMX20_00621at 646.493 kb on - strand, within MPMX20_00621at 646.515 kb on + strand, within MPMX20_00621at 646.523 kb on - strand, within MPMX20_00621at 646.632 kb on + strand, within MPMX20_00621at 646.674 kb on + strandat 646.682 kb on - strandat 646.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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643,763 + MPMX20_00618 0.60 -0.5
643,788 + MPMX20_00618 0.64 -0.1
643,788 + MPMX20_00618 0.64 -1.0
643,788 + MPMX20_00618 0.64 +0.9
643,796 - MPMX20_00618 0.65 -0.4
643,796 - MPMX20_00618 0.65 -1.3
643,796 - MPMX20_00618 0.65 +1.5
643,796 - MPMX20_00618 0.65 -1.5
643,796 - MPMX20_00618 0.65 +1.5
643,812 - MPMX20_00618 0.67 +1.5
643,812 - MPMX20_00618 0.67 +1.1
643,817 - MPMX20_00618 0.68 -2.1
643,822 + MPMX20_00618 0.68 +0.7
643,878 + MPMX20_00618 0.76 -0.6
643,878 + MPMX20_00618 0.76 -0.9
643,886 - MPMX20_00618 0.78 -1.9
644,192 - +0.5
644,280 + MPMX20_00619 0.22 -0.1
644,280 + MPMX20_00619 0.22 +2.4
644,287 - MPMX20_00619 0.23 +0.1
644,367 + MPMX20_00619 0.40 +0.9
644,367 + MPMX20_00619 0.40 +0.8
644,367 - MPMX20_00619 0.40 -2.1
644,402 - MPMX20_00619 0.48 -1.8
644,402 - MPMX20_00619 0.48 -0.9
644,482 + MPMX20_00619 0.65 +0.2
644,531 - MPMX20_00619 0.75 -0.0
644,624 + -2.3
644,635 - -0.9
644,675 + -1.0
644,675 + -0.1
644,681 + -0.0
644,683 - +1.1
644,683 - -0.8
644,683 - -1.4
644,683 - +0.2
644,689 - +0.4
644,689 - -3.2
644,750 + +1.3
644,758 - MPMX20_00620 0.10 -0.0
644,774 + MPMX20_00620 0.12 +0.9
644,808 + MPMX20_00620 0.15 +1.4
644,841 + MPMX20_00620 0.18 -4.0
644,843 - MPMX20_00620 0.18 +0.1
644,871 + MPMX20_00620 0.21 -1.2
644,879 - MPMX20_00620 0.22 +2.5
644,895 + MPMX20_00620 0.23 -2.1
644,903 - MPMX20_00620 0.24 -2.6
644,976 - MPMX20_00620 0.31 -1.9
644,976 - MPMX20_00620 0.31 -0.5
644,976 - MPMX20_00620 0.31 -2.5
644,997 - MPMX20_00620 0.33 +4.0
645,039 + MPMX20_00620 0.37 +1.4
645,039 + MPMX20_00620 0.37 -0.9
645,047 - MPMX20_00620 0.38 -1.7
645,091 + MPMX20_00620 0.42 +0.6
645,137 + MPMX20_00620 0.46 -0.7
645,137 + MPMX20_00620 0.46 +2.8
645,145 - MPMX20_00620 0.47 +1.7
645,145 - MPMX20_00620 0.47 -2.9
645,145 - MPMX20_00620 0.47 -0.9
645,190 - MPMX20_00620 0.51 -2.6
645,237 - MPMX20_00620 0.55 +0.5
645,246 + MPMX20_00620 0.56 +1.8
645,285 + MPMX20_00620 0.60 -0.9
645,298 - MPMX20_00620 0.61 +0.5
645,417 + MPMX20_00620 0.72 +0.4
645,530 + MPMX20_00620 0.83 -1.0
645,571 + MPMX20_00620 0.87 +0.1
645,579 - MPMX20_00620 0.88 +0.1
645,579 - MPMX20_00620 0.88 -0.1
645,622 + -3.8
645,628 + +1.0
645,683 - +0.5
645,696 + +1.5
645,696 + -0.2
645,732 - +0.1
645,739 + -1.2
645,841 - MPMX20_00621 0.13 -1.5
645,856 + MPMX20_00621 0.14 +0.1
645,857 + MPMX20_00621 0.14 +0.9
645,857 + MPMX20_00621 0.14 -1.4
645,950 - MPMX20_00621 0.23 -1.2
646,073 + MPMX20_00621 0.35 -1.1
646,078 + MPMX20_00621 0.35 +2.5
646,089 - MPMX20_00621 0.36 +2.5
646,091 - MPMX20_00621 0.36 -3.1
646,104 - MPMX20_00621 0.37 +0.0
646,128 + MPMX20_00621 0.40 -1.6
646,161 + MPMX20_00621 0.43 +0.8
646,287 + MPMX20_00621 0.54 -3.0
646,425 + MPMX20_00621 0.67 -1.4
646,430 + MPMX20_00621 0.68 +0.8
646,430 + MPMX20_00621 0.68 -3.1
646,430 + MPMX20_00621 0.68 -1.5
646,430 + MPMX20_00621 0.68 +0.1
646,430 + MPMX20_00621 0.68 -2.0
646,430 + MPMX20_00621 0.68 +0.9
646,430 + MPMX20_00621 0.68 +1.8
646,433 - MPMX20_00621 0.68 +0.9
646,438 - MPMX20_00621 0.68 -2.8
646,438 - MPMX20_00621 0.68 +0.5
646,438 - MPMX20_00621 0.68 -0.7
646,462 + MPMX20_00621 0.71 +0.6
646,469 - MPMX20_00621 0.71 +0.3
646,485 + MPMX20_00621 0.73 -0.7
646,488 - MPMX20_00621 0.73 +2.5
646,493 - MPMX20_00621 0.74 +1.4
646,515 + MPMX20_00621 0.76 -2.0
646,523 - MPMX20_00621 0.76 -1.0
646,632 + MPMX20_00621 0.86 -1.8
646,674 + +0.8
646,682 - +0.5
646,682 - -0.2

Or see this region's nucleotide sequence