Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00588 and MPMX20_00589 are separated by 95 nucleotides MPMX20_00589 and MPMX20_00590 are separated by 10 nucleotides MPMX20_00590 and MPMX20_00591 are separated by 288 nucleotides MPMX20_00591 and MPMX20_00592 are separated by 50 nucleotides
MPMX20_00588: MPMX20_00588 - Endoribonuclease SymE, at 617,637 to 618,089
_00588
MPMX20_00589: MPMX20_00589 - putative protein YjhP, at 618,185 to 618,931
_00589
MPMX20_00590: MPMX20_00590 - hypothetical protein, at 618,942 to 619,199
_00590
MPMX20_00591: MPMX20_00591 - hypothetical protein, at 619,488 to 620,060
_00591
MPMX20_00592: MPMX20_00592 - hypothetical protein, at 620,111 to 620,341
_00592
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 617.951 kb on + strand, within MPMX20_00588 at 617.952 kb on - strand, within MPMX20_00588 at 617.964 kb on + strand, within MPMX20_00588 at 617.974 kb on + strand, within MPMX20_00588 at 617.974 kb on + strand, within MPMX20_00588 at 617.974 kb on + strand, within MPMX20_00588 at 617.979 kb on + strand, within MPMX20_00588 at 617.982 kb on - strand, within MPMX20_00588 at 617.983 kb on + strand, within MPMX20_00588 at 617.987 kb on - strand, within MPMX20_00588 at 617.991 kb on - strand, within MPMX20_00588 at 617.996 kb on - strand, within MPMX20_00588 at 618.013 kb on + strand, within MPMX20_00588 at 618.029 kb on - strand, within MPMX20_00588 at 618.045 kb on + strand at 618.074 kb on + strand at 618.080 kb on - strand at 618.082 kb on - strand at 618.082 kb on - strand at 618.084 kb on + strand at 618.092 kb on - strand at 618.102 kb on - strand at 618.115 kb on + strand at 618.118 kb on - strand at 618.118 kb on - strand at 618.118 kb on - strand at 618.123 kb on - strand at 618.123 kb on - strand at 618.126 kb on + strand at 618.126 kb on + strand at 618.126 kb on + strand at 618.126 kb on + strand at 618.126 kb on + strand at 618.126 kb on + strand at 618.126 kb on + strand at 618.127 kb on + strand at 618.134 kb on - strand at 618.134 kb on - strand at 618.134 kb on - strand at 618.134 kb on - strand at 618.134 kb on - strand at 618.134 kb on - strand at 618.134 kb on - strand at 618.149 kb on - strand at 618.151 kb on + strand at 618.151 kb on + strand at 618.151 kb on + strand at 618.156 kb on - strand at 618.157 kb on - strand at 618.157 kb on - strand at 618.158 kb on + strand at 618.158 kb on + strand at 618.159 kb on - strand at 618.159 kb on - strand at 618.159 kb on - strand at 618.159 kb on - strand at 618.163 kb on + strand at 618.163 kb on + strand at 618.163 kb on + strand at 618.164 kb on + strand at 618.166 kb on - strand at 618.166 kb on - strand at 618.166 kb on - strand at 618.166 kb on - strand at 618.171 kb on - strand at 618.171 kb on - strand at 618.171 kb on - strand at 618.171 kb on - strand at 618.171 kb on - strand at 618.171 kb on - strand at 618.171 kb on - strand at 618.171 kb on - strand at 618.171 kb on - strand at 618.172 kb on - strand at 618.173 kb on - strand at 618.178 kb on + strand at 618.185 kb on - strand at 618.185 kb on - strand at 618.185 kb on - strand at 618.202 kb on - strand at 618.216 kb on - strand at 618.221 kb on + strand at 618.221 kb on + strand at 618.223 kb on + strand at 618.260 kb on + strand, within MPMX20_00589 at 618.325 kb on + strand, within MPMX20_00589 at 618.333 kb on - strand, within MPMX20_00589 at 618.353 kb on + strand, within MPMX20_00589 at 618.353 kb on + strand, within MPMX20_00589 at 618.361 kb on - strand, within MPMX20_00589 at 618.372 kb on + strand, within MPMX20_00589 at 618.388 kb on - strand, within MPMX20_00589 at 618.391 kb on + strand, within MPMX20_00589 at 618.391 kb on + strand, within MPMX20_00589 at 618.391 kb on + strand, within MPMX20_00589 at 618.399 kb on - strand, within MPMX20_00589 at 618.399 kb on - strand, within MPMX20_00589 at 618.399 kb on - strand, within MPMX20_00589 at 618.401 kb on - strand, within MPMX20_00589 at 618.424 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.467 kb on + strand, within MPMX20_00589 at 618.470 kb on - strand, within MPMX20_00589 at 618.475 kb on - strand, within MPMX20_00589 at 618.475 kb on - strand, within MPMX20_00589 at 618.475 kb on - strand, within MPMX20_00589 at 618.475 kb on - strand, within MPMX20_00589 at 618.480 kb on - strand, within MPMX20_00589 at 618.504 kb on - strand, within MPMX20_00589 at 618.506 kb on + strand, within MPMX20_00589 at 618.638 kb on + strand, within MPMX20_00589 at 618.646 kb on - strand, within MPMX20_00589 at 618.646 kb on - strand, within MPMX20_00589 at 618.703 kb on + strand, within MPMX20_00589 at 618.769 kb on + strand, within MPMX20_00589 at 618.774 kb on + strand, within MPMX20_00589 at 618.774 kb on + strand, within MPMX20_00589 at 618.781 kb on - strand, within MPMX20_00589 at 618.782 kb on - strand, within MPMX20_00589 at 618.787 kb on - strand, within MPMX20_00589 at 618.795 kb on - strand, within MPMX20_00589 at 618.845 kb on + strand, within MPMX20_00589 at 618.853 kb on - strand, within MPMX20_00589 at 618.853 kb on - strand, within MPMX20_00589 at 618.862 kb on + strand at 618.877 kb on + strand at 618.885 kb on - strand at 618.928 kb on + strand at 618.970 kb on + strand, within MPMX20_00590 at 618.972 kb on + strand, within MPMX20_00590 at 618.972 kb on + strand, within MPMX20_00590 at 618.980 kb on - strand, within MPMX20_00590 at 618.980 kb on - strand, within MPMX20_00590 at 618.980 kb on - strand, within MPMX20_00590 at 618.986 kb on + strand, within MPMX20_00590 at 618.994 kb on - strand, within MPMX20_00590 at 619.002 kb on - strand, within MPMX20_00590 at 619.002 kb on - strand, within MPMX20_00590 at 619.002 kb on - strand, within MPMX20_00590 at 619.025 kb on + strand, within MPMX20_00590 at 619.115 kb on + strand, within MPMX20_00590 at 619.115 kb on + strand, within MPMX20_00590 at 619.150 kb on + strand, within MPMX20_00590 at 619.158 kb on - strand, within MPMX20_00590 at 619.163 kb on + strand, within MPMX20_00590 at 619.163 kb on + strand, within MPMX20_00590 at 619.243 kb on - strand at 619.282 kb on - strand at 619.336 kb on + strand at 619.350 kb on - strand at 619.350 kb on - strand at 619.350 kb on - strand at 619.353 kb on + strand at 619.438 kb on + strand at 619.439 kb on - strand at 619.439 kb on - strand at 619.445 kb on - strand at 619.461 kb on + strand at 619.481 kb on + strand at 619.481 kb on + strand at 619.481 kb on + strand at 619.489 kb on - strand at 619.505 kb on + strand at 619.515 kb on - strand at 619.515 kb on - strand at 619.519 kb on + strand at 619.546 kb on - strand, within MPMX20_00591 at 619.553 kb on - strand, within MPMX20_00591 at 619.563 kb on + strand, within MPMX20_00591 at 619.571 kb on - strand, within MPMX20_00591 at 619.571 kb on - strand, within MPMX20_00591 at 619.633 kb on + strand, within MPMX20_00591 at 619.633 kb on + strand, within MPMX20_00591 at 619.641 kb on - strand, within MPMX20_00591 at 619.641 kb on - strand, within MPMX20_00591 at 619.651 kb on + strand, within MPMX20_00591 at 619.658 kb on + strand, within MPMX20_00591 at 619.659 kb on - strand, within MPMX20_00591 at 619.691 kb on + strand, within MPMX20_00591 at 619.691 kb on + strand, within MPMX20_00591 at 619.691 kb on + strand, within MPMX20_00591 at 619.725 kb on + strand, within MPMX20_00591 at 619.725 kb on - strand, within MPMX20_00591 at 619.733 kb on - strand, within MPMX20_00591 at 619.748 kb on - strand, within MPMX20_00591 at 619.755 kb on + strand, within MPMX20_00591 at 619.756 kb on - strand, within MPMX20_00591 at 619.791 kb on - strand, within MPMX20_00591 at 619.794 kb on - strand, within MPMX20_00591 at 619.805 kb on + strand, within MPMX20_00591 at 619.813 kb on - strand, within MPMX20_00591 at 619.851 kb on + strand, within MPMX20_00591 at 619.851 kb on + strand, within MPMX20_00591 at 619.859 kb on - strand, within MPMX20_00591 at 619.859 kb on - strand, within MPMX20_00591 at 619.861 kb on + strand, within MPMX20_00591 at 619.861 kb on + strand, within MPMX20_00591 at 619.863 kb on + strand, within MPMX20_00591 at 619.869 kb on - strand, within MPMX20_00591 at 619.871 kb on - strand, within MPMX20_00591 at 619.892 kb on - strand, within MPMX20_00591 at 619.918 kb on + strand, within MPMX20_00591 at 619.918 kb on + strand, within MPMX20_00591 at 619.918 kb on + strand, within MPMX20_00591 at 619.926 kb on - strand, within MPMX20_00591 at 619.995 kb on - strand, within MPMX20_00591 at 620.064 kb on + strand at 620.064 kb on + strand at 620.072 kb on - strand at 620.072 kb on - strand at 620.072 kb on - strand at 620.072 kb on - strand at 620.078 kb on + strand at 620.086 kb on - strand at 620.086 kb on - strand at 620.117 kb on - strand at 620.127 kb on - strand at 620.159 kb on - strand, within MPMX20_00592 at 620.196 kb on - strand, within MPMX20_00592
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 617,951 + MPMX20_00588 0.69 -1.7 617,952 - MPMX20_00588 0.70 -1.1 617,964 + MPMX20_00588 0.72 -1.1 617,974 + MPMX20_00588 0.74 +0.8 617,974 + MPMX20_00588 0.74 -0.2 617,974 + MPMX20_00588 0.74 -2.2 617,979 + MPMX20_00588 0.75 -0.7 617,982 - MPMX20_00588 0.76 +2.5 617,983 + MPMX20_00588 0.76 -1.0 617,987 - MPMX20_00588 0.77 -0.6 617,991 - MPMX20_00588 0.78 -1.4 617,996 - MPMX20_00588 0.79 -0.9 618,013 + MPMX20_00588 0.83 +0.9 618,029 - MPMX20_00588 0.87 -0.1 618,045 + -0.9 618,074 + +2.9 618,080 - +0.1 618,082 - +1.6 618,082 - +0.4 618,084 + -2.7 618,092 - -1.4 618,102 - -2.1 618,115 + -1.4 618,118 - -1.1 618,118 - -0.3 618,118 - +0.5 618,123 - +1.3 618,123 - -1.1 618,126 + +1.9 618,126 + +1.8 618,126 + +0.5 618,126 + -2.1 618,126 + +0.8 618,126 + +0.1 618,126 + -1.7 618,127 + +0.2 618,134 - -0.5 618,134 - -0.1 618,134 - -0.3 618,134 - +7.8 618,134 - +0.8 618,134 - -0.3 618,134 - +0.9 618,149 - +0.9 618,151 + +1.0 618,151 + +0.4 618,151 + +0.9 618,156 - +1.1 618,157 - -1.4 618,157 - -0.9 618,158 + +0.5 618,158 + -2.9 618,159 - +0.3 618,159 - +0.9 618,159 - +0.9 618,159 - +0.5 618,163 + -1.8 618,163 + +0.3 618,163 + -2.5 618,164 + -1.4 618,166 - +2.5 618,166 - -2.3 618,166 - +1.3 618,166 - +0.5 618,171 - +0.9 618,171 - -1.0 618,171 - -3.3 618,171 - -0.1 618,171 - +0.7 618,171 - -1.0 618,171 - +0.5 618,171 - -1.7 618,171 - +0.9 618,172 - +0.1 618,173 - -3.1 618,178 + +0.3 618,185 - -0.4 618,185 - +2.5 618,185 - -0.6 618,202 - +1.8 618,216 - -0.3 618,221 + -0.7 618,221 + -0.2 618,223 + -1.1 618,260 + MPMX20_00589 0.10 +0.6 618,325 + MPMX20_00589 0.19 +0.2 618,333 - MPMX20_00589 0.20 -0.0 618,353 + MPMX20_00589 0.22 -0.2 618,353 + MPMX20_00589 0.22 +1.4 618,361 - MPMX20_00589 0.24 +0.4 618,372 + MPMX20_00589 0.25 +0.7 618,388 - MPMX20_00589 0.27 +0.2 618,391 + MPMX20_00589 0.28 -2.5 618,391 + MPMX20_00589 0.28 +1.5 618,391 + MPMX20_00589 0.28 -1.9 618,399 - MPMX20_00589 0.29 -0.9 618,399 - MPMX20_00589 0.29 -0.9 618,399 - MPMX20_00589 0.29 -0.4 618,401 - MPMX20_00589 0.29 -1.0 618,424 + MPMX20_00589 0.32 -0.5 618,467 + MPMX20_00589 0.38 +2.5 618,467 + MPMX20_00589 0.38 -0.9 618,467 + MPMX20_00589 0.38 +1.1 618,467 + MPMX20_00589 0.38 -2.4 618,467 + MPMX20_00589 0.38 +0.6 618,467 + MPMX20_00589 0.38 -0.9 618,467 + MPMX20_00589 0.38 -1.4 618,467 + MPMX20_00589 0.38 -1.1 618,467 + MPMX20_00589 0.38 +0.1 618,467 + MPMX20_00589 0.38 -1.0 618,470 - MPMX20_00589 0.38 +0.5 618,475 - MPMX20_00589 0.39 +1.0 618,475 - MPMX20_00589 0.39 +0.0 618,475 - MPMX20_00589 0.39 -1.2 618,475 - MPMX20_00589 0.39 -1.2 618,480 - MPMX20_00589 0.39 -0.7 618,504 - MPMX20_00589 0.43 +0.2 618,506 + MPMX20_00589 0.43 -0.6 618,638 + MPMX20_00589 0.61 +0.3 618,646 - MPMX20_00589 0.62 -1.9 618,646 - MPMX20_00589 0.62 -1.2 618,703 + MPMX20_00589 0.69 +1.5 618,769 + MPMX20_00589 0.78 +0.8 618,774 + MPMX20_00589 0.79 +0.7 618,774 + MPMX20_00589 0.79 +0.5 618,781 - MPMX20_00589 0.80 +2.5 618,782 - MPMX20_00589 0.80 +0.2 618,787 - MPMX20_00589 0.81 -2.8 618,795 - MPMX20_00589 0.82 +0.7 618,845 + MPMX20_00589 0.88 +2.0 618,853 - MPMX20_00589 0.89 -1.1 618,853 - MPMX20_00589 0.89 -0.3 618,862 + +1.5 618,877 + +0.3 618,885 - -0.4 618,928 + -1.0 618,970 + MPMX20_00590 0.11 -2.6 618,972 + MPMX20_00590 0.12 +0.9 618,972 + MPMX20_00590 0.12 +1.2 618,980 - MPMX20_00590 0.15 -0.9 618,980 - MPMX20_00590 0.15 -1.0 618,980 - MPMX20_00590 0.15 -0.2 618,986 + MPMX20_00590 0.17 -0.1 618,994 - MPMX20_00590 0.20 +0.1 619,002 - MPMX20_00590 0.23 +0.2 619,002 - MPMX20_00590 0.23 -2.1 619,002 - MPMX20_00590 0.23 -3.0 619,025 + MPMX20_00590 0.32 +0.9 619,115 + MPMX20_00590 0.67 +0.6 619,115 + MPMX20_00590 0.67 +3.0 619,150 + MPMX20_00590 0.81 +1.7 619,158 - MPMX20_00590 0.84 +3.5 619,163 + MPMX20_00590 0.86 -0.4 619,163 + MPMX20_00590 0.86 -0.4 619,243 - -2.4 619,282 - -3.4 619,336 + +0.5 619,350 - +2.9 619,350 - +0.2 619,350 - +0.1 619,353 + -0.7 619,438 + +0.1 619,439 - +0.6 619,439 - -2.5 619,445 - +1.7 619,461 + -2.0 619,481 + -1.0 619,481 + -0.7 619,481 + -0.0 619,489 - +1.5 619,505 + +0.9 619,515 - -2.3 619,515 - +0.8 619,519 + -1.0 619,546 - MPMX20_00591 0.10 -1.1 619,553 - MPMX20_00591 0.11 +1.0 619,563 + MPMX20_00591 0.13 -1.1 619,571 - MPMX20_00591 0.14 -1.5 619,571 - MPMX20_00591 0.14 -0.9 619,633 + MPMX20_00591 0.25 -2.7 619,633 + MPMX20_00591 0.25 +1.2 619,641 - MPMX20_00591 0.27 +2.1 619,641 - MPMX20_00591 0.27 +4.1 619,651 + MPMX20_00591 0.28 +0.9 619,658 + MPMX20_00591 0.30 -0.1 619,659 - MPMX20_00591 0.30 +0.6 619,691 + MPMX20_00591 0.35 -1.4 619,691 + MPMX20_00591 0.35 -1.0 619,691 + MPMX20_00591 0.35 +0.0 619,725 + MPMX20_00591 0.41 +0.5 619,725 - MPMX20_00591 0.41 -1.0 619,733 - MPMX20_00591 0.43 +3.0 619,748 - MPMX20_00591 0.45 -1.1 619,755 + MPMX20_00591 0.47 +1.6 619,756 - MPMX20_00591 0.47 -2.4 619,791 - MPMX20_00591 0.53 +0.1 619,794 - MPMX20_00591 0.53 +1.2 619,805 + MPMX20_00591 0.55 +0.3 619,813 - MPMX20_00591 0.57 +0.9 619,851 + MPMX20_00591 0.63 -0.0 619,851 + MPMX20_00591 0.63 -0.2 619,859 - MPMX20_00591 0.65 +0.8 619,859 - MPMX20_00591 0.65 +2.1 619,861 + MPMX20_00591 0.65 +0.5 619,861 + MPMX20_00591 0.65 +2.0 619,863 + MPMX20_00591 0.65 -1.0 619,869 - MPMX20_00591 0.66 +0.1 619,871 - MPMX20_00591 0.67 +0.1 619,892 - MPMX20_00591 0.71 +0.6 619,918 + MPMX20_00591 0.75 -0.5 619,918 + MPMX20_00591 0.75 -0.4 619,918 + MPMX20_00591 0.75 -3.4 619,926 - MPMX20_00591 0.76 +1.5 619,995 - MPMX20_00591 0.88 -1.2 620,064 + +0.5 620,064 + +0.4 620,072 - +0.9 620,072 - +1.3 620,072 - -1.0 620,072 - +0.6 620,078 + +1.0 620,086 - +1.6 620,086 - +1.5 620,117 - -2.5 620,127 - +1.6 620,159 - MPMX20_00592 0.21 -1.6 620,196 - MPMX20_00592 0.37 -1.1
Or see this region's nucleotide sequence