Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00544 and MPMX20_00545 are separated by 239 nucleotides MPMX20_00545 and MPMX20_00546 are separated by 71 nucleotides
MPMX20_00544: MPMX20_00544 - Aspartate carbamoyltransferase catalytic subunit, at 566,686 to 567,618
_00544
MPMX20_00545: MPMX20_00545 - Arginine repressor, at 567,858 to 568,346
_00545
MPMX20_00546: MPMX20_00546 - hypothetical protein, at 568,418 to 569,821
_00546
Position (kb) 567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 566.882 kb on - strand, within MPMX20_00544 at 566.882 kb on - strand, within MPMX20_00544 at 566.885 kb on + strand, within MPMX20_00544 at 566.893 kb on - strand, within MPMX20_00544 at 566.960 kb on + strand, within MPMX20_00544 at 566.998 kb on - strand, within MPMX20_00544 at 567.024 kb on - strand, within MPMX20_00544 at 567.095 kb on + strand, within MPMX20_00544 at 567.108 kb on + strand, within MPMX20_00544 at 567.149 kb on + strand, within MPMX20_00544 at 567.169 kb on + strand, within MPMX20_00544 at 567.169 kb on + strand, within MPMX20_00544 at 567.177 kb on - strand, within MPMX20_00544 at 567.177 kb on - strand, within MPMX20_00544 at 567.177 kb on - strand, within MPMX20_00544 at 567.180 kb on + strand, within MPMX20_00544 at 567.203 kb on - strand, within MPMX20_00544 at 567.339 kb on + strand, within MPMX20_00544 at 567.383 kb on + strand, within MPMX20_00544 at 567.435 kb on - strand, within MPMX20_00544 at 567.445 kb on + strand, within MPMX20_00544 at 567.554 kb on + strand at 567.562 kb on - strand at 567.572 kb on - strand at 567.651 kb on + strand at 567.654 kb on + strand at 567.706 kb on - strand at 567.722 kb on - strand at 567.732 kb on + strand at 567.732 kb on + strand at 567.739 kb on - strand at 567.747 kb on + strand at 567.755 kb on - strand at 567.917 kb on + strand, within MPMX20_00545 at 567.917 kb on - strand, within MPMX20_00545 at 567.945 kb on - strand, within MPMX20_00545 at 568.015 kb on - strand, within MPMX20_00545 at 568.016 kb on - strand, within MPMX20_00545 at 568.020 kb on - strand, within MPMX20_00545 at 568.042 kb on - strand, within MPMX20_00545 at 568.047 kb on + strand, within MPMX20_00545 at 568.047 kb on + strand, within MPMX20_00545 at 568.047 kb on + strand, within MPMX20_00545 at 568.102 kb on + strand, within MPMX20_00545 at 568.110 kb on - strand, within MPMX20_00545 at 568.207 kb on - strand, within MPMX20_00545 at 568.216 kb on - strand, within MPMX20_00545 at 568.229 kb on - strand, within MPMX20_00545 at 568.263 kb on - strand, within MPMX20_00545 at 568.297 kb on - strand, within MPMX20_00545 at 568.305 kb on + strand at 568.359 kb on + strand at 568.359 kb on - strand at 568.382 kb on + strand at 568.443 kb on - strand at 568.572 kb on - strand, within MPMX20_00546 at 568.588 kb on + strand, within MPMX20_00546 at 568.588 kb on + strand, within MPMX20_00546 at 568.600 kb on + strand, within MPMX20_00546 at 568.601 kb on - strand, within MPMX20_00546 at 568.606 kb on + strand, within MPMX20_00546 at 568.606 kb on + strand, within MPMX20_00546 at 568.611 kb on + strand, within MPMX20_00546 at 568.611 kb on + strand, within MPMX20_00546 at 568.613 kb on + strand, within MPMX20_00546 at 568.654 kb on - strand, within MPMX20_00546 at 568.732 kb on + strand, within MPMX20_00546 at 568.791 kb on + strand, within MPMX20_00546 at 568.833 kb on - strand, within MPMX20_00546 at 568.958 kb on - strand, within MPMX20_00546 at 568.973 kb on + strand, within MPMX20_00546 at 568.973 kb on + strand, within MPMX20_00546 at 568.976 kb on - strand, within MPMX20_00546 at 568.981 kb on + strand, within MPMX20_00546 at 568.981 kb on - strand, within MPMX20_00546 at 569.009 kb on + strand, within MPMX20_00546 at 569.022 kb on - strand, within MPMX20_00546 at 569.215 kb on + strand, within MPMX20_00546 at 569.215 kb on + strand, within MPMX20_00546 at 569.218 kb on - strand, within MPMX20_00546 at 569.223 kb on - strand, within MPMX20_00546 at 569.236 kb on - strand, within MPMX20_00546 at 569.275 kb on + strand, within MPMX20_00546
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 566,882 - MPMX20_00544 0.21 +0.1 566,882 - MPMX20_00544 0.21 -1.4 566,885 + MPMX20_00544 0.21 +0.8 566,893 - MPMX20_00544 0.22 +1.4 566,960 + MPMX20_00544 0.29 -1.3 566,998 - MPMX20_00544 0.33 +1.3 567,024 - MPMX20_00544 0.36 -0.8 567,095 + MPMX20_00544 0.44 +0.8 567,108 + MPMX20_00544 0.45 -0.2 567,149 + MPMX20_00544 0.50 +1.4 567,169 + MPMX20_00544 0.52 -0.2 567,169 + MPMX20_00544 0.52 -1.6 567,177 - MPMX20_00544 0.53 +2.4 567,177 - MPMX20_00544 0.53 -0.2 567,177 - MPMX20_00544 0.53 -0.2 567,180 + MPMX20_00544 0.53 -1.3 567,203 - MPMX20_00544 0.55 +0.8 567,339 + MPMX20_00544 0.70 -0.9 567,383 + MPMX20_00544 0.75 -1.9 567,435 - MPMX20_00544 0.80 +4.0 567,445 + MPMX20_00544 0.81 -0.2 567,554 + -0.4 567,562 - +0.8 567,572 - -0.2 567,651 + -0.2 567,654 + +0.1 567,706 - +4.5 567,722 - +0.8 567,732 + -2.2 567,732 + +1.4 567,739 - -1.2 567,747 + +1.9 567,755 - -0.8 567,917 + MPMX20_00545 0.12 -0.9 567,917 - MPMX20_00545 0.12 -1.3 567,945 - MPMX20_00545 0.18 -0.2 568,015 - MPMX20_00545 0.32 +0.2 568,016 - MPMX20_00545 0.32 +1.8 568,020 - MPMX20_00545 0.33 +5.3 568,042 - MPMX20_00545 0.38 +0.5 568,047 + MPMX20_00545 0.39 +1.2 568,047 + MPMX20_00545 0.39 -1.4 568,047 + MPMX20_00545 0.39 -2.8 568,102 + MPMX20_00545 0.50 -1.7 568,110 - MPMX20_00545 0.52 +0.4 568,207 - MPMX20_00545 0.71 +0.5 568,216 - MPMX20_00545 0.73 -0.8 568,229 - MPMX20_00545 0.76 -1.2 568,263 - MPMX20_00545 0.83 -0.9 568,297 - MPMX20_00545 0.90 +4.1 568,305 + -0.9 568,359 + +0.4 568,359 - -0.9 568,382 + -1.9 568,443 - -0.8 568,572 - MPMX20_00546 0.11 +1.4 568,588 + MPMX20_00546 0.12 +0.8 568,588 + MPMX20_00546 0.12 +0.2 568,600 + MPMX20_00546 0.13 +1.1 568,601 - MPMX20_00546 0.13 -1.4 568,606 + MPMX20_00546 0.13 -2.2 568,606 + MPMX20_00546 0.13 +1.8 568,611 + MPMX20_00546 0.14 +1.3 568,611 + MPMX20_00546 0.14 -1.6 568,613 + MPMX20_00546 0.14 +0.4 568,654 - MPMX20_00546 0.17 -2.2 568,732 + MPMX20_00546 0.22 +1.6 568,791 + MPMX20_00546 0.27 +0.8 568,833 - MPMX20_00546 0.30 +0.5 568,958 - MPMX20_00546 0.38 -0.5 568,973 + MPMX20_00546 0.40 -0.5 568,973 + MPMX20_00546 0.40 +1.2 568,976 - MPMX20_00546 0.40 -0.3 568,981 + MPMX20_00546 0.40 -1.3 568,981 - MPMX20_00546 0.40 -0.0 569,009 + MPMX20_00546 0.42 -1.0 569,022 - MPMX20_00546 0.43 -1.3 569,215 + MPMX20_00546 0.57 +0.0 569,215 + MPMX20_00546 0.57 -2.7 569,218 - MPMX20_00546 0.57 -1.0 569,223 - MPMX20_00546 0.57 -0.8 569,236 - MPMX20_00546 0.58 +1.2 569,275 + MPMX20_00546 0.61 -1.7
Or see this region's nucleotide sequence