Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00505 and MPMX20_00506 are separated by 42 nucleotides MPMX20_00506 and MPMX20_00507 are separated by 481 nucleotides MPMX20_00507 and MPMX20_00508 are separated by 309 nucleotides
MPMX20_00505: MPMX20_00505 - Gamma-glutamylcyclotransferase family protein ytfP, at 523,014 to 523,358
_00505
MPMX20_00506: MPMX20_00506 - hypothetical protein, at 523,401 to 523,724
_00506
MPMX20_00507: MPMX20_00507 - Inorganic pyrophosphatase, at 524,206 to 524,736
_00507
MPMX20_00508: MPMX20_00508 - ABC transporter periplasmic-binding protein YtfQ, at 525,046 to 526,002
_00508
Position (kb)
524
525 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 523.263 kb on + strand, within MPMX20_00505 at 523.265 kb on + strand, within MPMX20_00505 at 523.273 kb on - strand, within MPMX20_00505 at 523.273 kb on - strand, within MPMX20_00505 at 523.273 kb on - strand, within MPMX20_00505 at 523.273 kb on - strand, within MPMX20_00505 at 523.341 kb on + strand at 523.404 kb on + strand at 523.409 kb on + strand at 523.409 kb on + strand at 523.412 kb on - strand at 523.417 kb on - strand at 523.417 kb on - strand at 523.417 kb on - strand at 523.429 kb on + strand at 523.466 kb on - strand, within MPMX20_00506 at 523.477 kb on + strand, within MPMX20_00506 at 523.477 kb on + strand, within MPMX20_00506 at 523.477 kb on + strand, within MPMX20_00506 at 523.481 kb on + strand, within MPMX20_00506 at 523.516 kb on - strand, within MPMX20_00506 at 523.516 kb on - strand, within MPMX20_00506 at 523.642 kb on - strand, within MPMX20_00506 at 523.678 kb on - strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on - strand, within MPMX20_00506 at 523.679 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.694 kb on + strand at 523.694 kb on + strand at 523.694 kb on + strand at 523.694 kb on + strand at 523.694 kb on + strand at 523.701 kb on + strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.709 kb on - strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.757 kb on + strand at 523.757 kb on + strand at 523.757 kb on + strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.806 kb on + strand at 523.806 kb on + strand at 523.808 kb on + strand at 523.812 kb on + strand at 523.812 kb on + strand at 523.814 kb on - strand at 523.816 kb on - strand at 523.818 kb on + strand at 523.818 kb on + strand at 523.821 kb on - strand at 523.821 kb on - strand at 523.826 kb on - strand at 523.826 kb on - strand at 523.826 kb on - strand at 523.839 kb on - strand at 523.839 kb on - strand at 523.841 kb on - strand at 523.864 kb on + strand at 523.864 kb on + strand at 523.869 kb on + strand at 523.869 kb on + strand at 523.869 kb on + strand at 523.869 kb on + strand at 523.885 kb on + strand at 523.885 kb on + strand at 523.886 kb on + strand at 523.893 kb on - strand at 523.944 kb on + strand at 523.944 kb on + strand at 523.944 kb on + strand at 523.945 kb on + strand at 523.945 kb on + strand at 523.952 kb on - strand at 523.953 kb on - strand at 523.966 kb on + strand at 523.985 kb on - strand at 524.003 kb on - strand at 524.007 kb on + strand at 524.013 kb on - strand at 524.025 kb on + strand at 524.026 kb on + strand at 524.033 kb on - strand at 524.035 kb on + strand at 524.044 kb on + strand at 524.044 kb on + strand at 524.052 kb on - strand at 524.052 kb on - strand at 524.057 kb on - strand at 524.057 kb on - strand at 524.059 kb on + strand at 524.060 kb on + strand at 524.060 kb on + strand at 524.060 kb on + strand at 524.060 kb on + strand at 524.067 kb on + strand at 524.068 kb on - strand at 524.080 kb on + strand at 524.080 kb on + strand at 524.080 kb on + strand at 524.081 kb on + strand at 524.083 kb on + strand at 524.083 kb on + strand at 524.088 kb on - strand at 524.091 kb on - strand at 524.127 kb on - strand at 524.129 kb on - strand at 524.132 kb on - strand at 524.211 kb on - strand at 524.818 kb on - strand at 525.015 kb on - strand at 525.025 kb on - strand at 525.027 kb on + strand at 525.030 kb on + strand at 525.038 kb on - strand at 525.038 kb on - strand at 525.038 kb on - strand at 525.046 kb on - strand at 525.048 kb on - strand at 525.063 kb on - strand at 525.168 kb on + strand, within MPMX20_00508 at 525.264 kb on + strand, within MPMX20_00508 at 525.331 kb on + strand, within MPMX20_00508 at 525.331 kb on + strand, within MPMX20_00508 at 525.339 kb on - strand, within MPMX20_00508 at 525.339 kb on - strand, within MPMX20_00508 at 525.367 kb on + strand, within MPMX20_00508 at 525.485 kb on - strand, within MPMX20_00508 at 525.492 kb on + strand, within MPMX20_00508 at 525.492 kb on + strand, within MPMX20_00508 at 525.518 kb on - strand, within MPMX20_00508 at 525.521 kb on - strand, within MPMX20_00508 at 525.524 kb on + strand, within MPMX20_00508 at 525.553 kb on + strand, within MPMX20_00508 at 525.561 kb on - strand, within MPMX20_00508 at 525.585 kb on + strand, within MPMX20_00508 at 525.593 kb on - strand, within MPMX20_00508 at 525.593 kb on - strand, within MPMX20_00508 at 525.631 kb on + strand, within MPMX20_00508 at 525.632 kb on + strand, within MPMX20_00508 at 525.632 kb on + strand, within MPMX20_00508 at 525.691 kb on + strand, within MPMX20_00508 at 525.698 kb on - strand, within MPMX20_00508 at 525.722 kb on + strand, within MPMX20_00508 at 525.722 kb on + strand, within MPMX20_00508 at 525.730 kb on - strand, within MPMX20_00508 at 525.730 kb on - strand, within MPMX20_00508 at 525.735 kb on - strand, within MPMX20_00508 at 525.735 kb on - strand, within MPMX20_00508 at 525.735 kb on - strand, within MPMX20_00508
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 523,263 + MPMX20_00505 0.72 -1.8 523,265 + MPMX20_00505 0.73 -1.7 523,273 - MPMX20_00505 0.75 -3.1 523,273 - MPMX20_00505 0.75 +0.4 523,273 - MPMX20_00505 0.75 -0.5 523,273 - MPMX20_00505 0.75 -1.8 523,341 + +0.5 523,404 + -0.1 523,409 + -1.8 523,409 + +1.4 523,412 - -0.1 523,417 - +0.1 523,417 - -0.1 523,417 - -1.5 523,429 + -1.5 523,466 - MPMX20_00506 0.20 -0.4 523,477 + MPMX20_00506 0.23 -3.9 523,477 + MPMX20_00506 0.23 +0.4 523,477 + MPMX20_00506 0.23 -3.3 523,481 + MPMX20_00506 0.25 -1.2 523,516 - MPMX20_00506 0.35 -1.3 523,516 - MPMX20_00506 0.35 -0.2 523,642 - MPMX20_00506 0.74 -0.8 523,678 - MPMX20_00506 0.85 +0.0 523,679 + MPMX20_00506 0.86 -1.8 523,679 + MPMX20_00506 0.86 -0.2 523,679 + MPMX20_00506 0.86 -1.8 523,679 + MPMX20_00506 0.86 -1.4 523,679 + MPMX20_00506 0.86 +0.1 523,679 - MPMX20_00506 0.86 +0.1 523,679 - MPMX20_00506 0.86 +0.4 523,687 - MPMX20_00506 0.88 -1.4 523,687 - MPMX20_00506 0.88 +0.7 523,687 - MPMX20_00506 0.88 -1.8 523,687 - MPMX20_00506 0.88 +1.8 523,687 - MPMX20_00506 0.88 +1.4 523,687 - MPMX20_00506 0.88 -0.6 523,687 - MPMX20_00506 0.88 -0.2 523,687 - MPMX20_00506 0.88 -0.0 523,687 - MPMX20_00506 0.88 +1.4 523,694 + +0.2 523,694 + +0.4 523,694 + +0.6 523,694 + -0.2 523,694 + -0.0 523,701 + +0.8 523,702 - -0.8 523,702 - +0.6 523,702 - -1.1 523,702 - +0.6 523,702 - +0.3 523,702 - -1.0 523,702 - -1.5 523,702 - +0.0 523,702 - -1.2 523,702 - -0.2 523,702 - -0.6 523,709 - -2.4 523,747 + -0.7 523,747 + -2.1 523,747 + +0.1 523,747 + +2.1 523,747 + -2.1 523,747 + -1.7 523,747 + -0.8 523,752 + -1.3 523,752 + +0.1 523,752 + -0.2 523,752 + -1.5 523,752 + -2.9 523,752 + +0.6 523,752 + +0.4 523,752 + +1.1 523,752 + -3.2 523,752 + +3.8 523,755 - -0.3 523,755 - +1.2 523,755 - +1.0 523,755 - +0.2 523,755 - -1.0 523,755 - +0.1 523,755 - -1.2 523,755 - -1.9 523,755 - +1.1 523,755 - -0.1 523,755 - -0.2 523,755 - -0.0 523,755 - -0.3 523,755 - +0.2 523,755 - +1.5 523,755 - -2.0 523,755 - +1.3 523,757 + +0.8 523,757 + -2.9 523,757 + +1.4 523,760 - +0.7 523,760 - -0.4 523,760 - +0.6 523,760 - -0.9 523,760 - +0.2 523,760 - -1.2 523,760 - +0.8 523,760 - -2.0 523,760 - +0.8 523,760 - +1.1 523,760 - -1.0 523,760 - -2.6 523,760 - -1.2 523,806 + -2.0 523,806 + -0.2 523,808 + -0.4 523,812 + -2.3 523,812 + -1.1 523,814 - -2.3 523,816 - -2.0 523,818 + +2.7 523,818 + +0.8 523,821 - -0.7 523,821 - +1.8 523,826 - +2.8 523,826 - -0.7 523,826 - +1.5 523,839 - -1.6 523,839 - -0.5 523,841 - -0.7 523,864 + -0.8 523,864 + +0.2 523,869 + +0.8 523,869 + +0.9 523,869 + -1.5 523,869 + -0.2 523,885 + -1.8 523,885 + +0.1 523,886 + +0.8 523,893 - -1.5 523,944 + -0.9 523,944 + -0.8 523,944 + +0.1 523,945 + +0.1 523,945 + +0.8 523,952 - +1.0 523,953 - +0.4 523,966 + -0.9 523,985 - +0.6 524,003 - -2.1 524,007 + +1.7 524,013 - -0.8 524,025 + +0.1 524,026 + +0.8 524,033 - -1.0 524,035 + -1.6 524,044 + +0.6 524,044 + +0.5 524,052 - -0.8 524,052 - -0.8 524,057 - -2.5 524,057 - +1.6 524,059 + -3.5 524,060 + +3.0 524,060 + -0.1 524,060 + -0.5 524,060 + +4.6 524,067 + -0.3 524,068 - -1.8 524,080 + -1.0 524,080 + +0.3 524,080 + -1.9 524,081 + +1.5 524,083 + -0.1 524,083 + -2.0 524,088 - -0.1 524,091 - +0.6 524,127 - +1.4 524,129 - -2.0 524,132 - -0.9 524,211 - -0.8 524,818 - -0.7 525,015 - +0.2 525,025 - +0.7 525,027 + -0.2 525,030 + -0.7 525,038 - -1.2 525,038 - -1.7 525,038 - +0.8 525,046 - +0.8 525,048 - -2.6 525,063 - +1.0 525,168 + MPMX20_00508 0.13 -0.7 525,264 + MPMX20_00508 0.23 +0.7 525,331 + MPMX20_00508 0.30 +2.4 525,331 + MPMX20_00508 0.30 +0.2 525,339 - MPMX20_00508 0.31 -0.6 525,339 - MPMX20_00508 0.31 -1.9 525,367 + MPMX20_00508 0.34 +0.1 525,485 - MPMX20_00508 0.46 +0.8 525,492 + MPMX20_00508 0.47 -0.4 525,492 + MPMX20_00508 0.47 -0.7 525,518 - MPMX20_00508 0.49 +0.7 525,521 - MPMX20_00508 0.50 -1.0 525,524 + MPMX20_00508 0.50 -1.3 525,553 + MPMX20_00508 0.53 -1.2 525,561 - MPMX20_00508 0.54 -1.5 525,585 + MPMX20_00508 0.56 -0.9 525,593 - MPMX20_00508 0.57 -0.9 525,593 - MPMX20_00508 0.57 +0.4 525,631 + MPMX20_00508 0.61 -1.5 525,632 + MPMX20_00508 0.61 -3.0 525,632 + MPMX20_00508 0.61 -1.2 525,691 + MPMX20_00508 0.67 +0.8 525,698 - MPMX20_00508 0.68 -1.5 525,722 + MPMX20_00508 0.71 -0.5 525,722 + MPMX20_00508 0.71 -0.5 525,730 - MPMX20_00508 0.71 -1.4 525,730 - MPMX20_00508 0.71 +0.4 525,735 - MPMX20_00508 0.72 -2.6 525,735 - MPMX20_00508 0.72 +0.1 525,735 - MPMX20_00508 0.72 -1.0
Or see this region's nucleotide sequence