Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00494

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00492 and MPMX20_00493 overlap by 7 nucleotidesMPMX20_00493 and MPMX20_00494 are separated by 324 nucleotidesMPMX20_00494 and MPMX20_00495 are separated by 78 nucleotides MPMX20_00492: MPMX20_00492 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 505,875 to 506,615 _00492 MPMX20_00493: MPMX20_00493 - putative protein YtfJ, at 506,609 to 507,166 _00493 MPMX20_00494: MPMX20_00494 - hypothetical protein, at 507,491 to 507,697 _00494 MPMX20_00495: MPMX20_00495 - hypothetical protein, at 507,776 to 509,113 _00495 Position (kb) 507 508Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 506.518 kb on - strand, within MPMX20_00492at 506.532 kb on + strand, within MPMX20_00492at 506.558 kb on + strandat 506.558 kb on + strandat 506.558 kb on + strandat 506.566 kb on - strandat 506.566 kb on - strandat 506.568 kb on - strandat 506.656 kb on - strandat 506.663 kb on + strandat 506.663 kb on + strandat 506.687 kb on + strand, within MPMX20_00493at 506.689 kb on + strand, within MPMX20_00493at 506.697 kb on - strand, within MPMX20_00493at 506.743 kb on + strand, within MPMX20_00493at 506.763 kb on - strand, within MPMX20_00493at 506.819 kb on - strand, within MPMX20_00493at 506.915 kb on + strand, within MPMX20_00493at 506.969 kb on + strand, within MPMX20_00493at 506.979 kb on + strand, within MPMX20_00493at 506.987 kb on - strand, within MPMX20_00493at 507.003 kb on + strand, within MPMX20_00493at 507.006 kb on - strand, within MPMX20_00493at 507.008 kb on + strand, within MPMX20_00493at 507.011 kb on - strand, within MPMX20_00493at 507.016 kb on - strand, within MPMX20_00493at 507.116 kb on - strandat 507.130 kb on - strandat 507.148 kb on + strandat 507.148 kb on + strandat 507.169 kb on - strandat 507.181 kb on + strandat 507.181 kb on + strandat 507.235 kb on + strandat 507.300 kb on + strandat 507.300 kb on + strandat 507.300 kb on + strandat 507.300 kb on + strandat 507.301 kb on + strandat 507.305 kb on + strandat 507.308 kb on - strandat 507.308 kb on - strandat 507.310 kb on + strandat 507.313 kb on - strandat 507.315 kb on + strandat 507.315 kb on + strandat 507.323 kb on - strandat 507.323 kb on - strandat 507.323 kb on - strandat 507.379 kb on + strandat 507.381 kb on + strandat 507.381 kb on + strandat 507.389 kb on + strandat 507.389 kb on + strandat 507.389 kb on + strandat 507.389 kb on - strandat 507.389 kb on - strandat 507.389 kb on - strandat 507.394 kb on + strandat 507.397 kb on - strandat 507.397 kb on - strandat 507.397 kb on - strandat 507.397 kb on - strandat 507.397 kb on - strandat 507.397 kb on - strandat 507.397 kb on - strandat 507.397 kb on - strandat 507.397 kb on - strandat 507.397 kb on - strandat 507.399 kb on + strandat 507.399 kb on + strandat 507.399 kb on + strandat 507.402 kb on - strandat 507.407 kb on - strandat 507.440 kb on - strandat 507.455 kb on - strandat 507.465 kb on - strandat 507.516 kb on - strand, within MPMX20_00494at 507.567 kb on - strand, within MPMX20_00494at 507.649 kb on + strand, within MPMX20_00494at 507.669 kb on - strand, within MPMX20_00494at 507.691 kb on + strandat 507.691 kb on + strandat 507.691 kb on + strandat 507.699 kb on - strandat 507.699 kb on - strandat 507.699 kb on - strandat 507.705 kb on + strandat 507.708 kb on + strandat 507.749 kb on + strandat 507.765 kb on - strandat 507.864 kb on + strandat 508.053 kb on + strand, within MPMX20_00495at 508.053 kb on + strand, within MPMX20_00495at 508.054 kb on + strand, within MPMX20_00495at 508.061 kb on - strand, within MPMX20_00495at 508.062 kb on - strand, within MPMX20_00495at 508.078 kb on - strand, within MPMX20_00495at 508.112 kb on + strand, within MPMX20_00495at 508.118 kb on - strand, within MPMX20_00495at 508.141 kb on + strand, within MPMX20_00495at 508.141 kb on + strand, within MPMX20_00495at 508.149 kb on - strand, within MPMX20_00495at 508.149 kb on - strand, within MPMX20_00495at 508.160 kb on - strand, within MPMX20_00495at 508.231 kb on + strand, within MPMX20_00495at 508.231 kb on + strand, within MPMX20_00495at 508.231 kb on + strand, within MPMX20_00495at 508.231 kb on + strand, within MPMX20_00495at 508.231 kb on + strand, within MPMX20_00495at 508.231 kb on + strand, within MPMX20_00495at 508.231 kb on + strand, within MPMX20_00495at 508.232 kb on + strand, within MPMX20_00495at 508.232 kb on + strand, within MPMX20_00495at 508.239 kb on - strand, within MPMX20_00495at 508.239 kb on - strand, within MPMX20_00495at 508.239 kb on - strand, within MPMX20_00495at 508.239 kb on - strand, within MPMX20_00495at 508.239 kb on - strand, within MPMX20_00495at 508.285 kb on + strand, within MPMX20_00495at 508.299 kb on - strand, within MPMX20_00495at 508.379 kb on - strand, within MPMX20_00495at 508.410 kb on - strand, within MPMX20_00495at 508.425 kb on + strand, within MPMX20_00495at 508.474 kb on + strand, within MPMX20_00495at 508.557 kb on + strand, within MPMX20_00495at 508.579 kb on + strand, within MPMX20_00495at 508.656 kb on + strand, within MPMX20_00495at 508.673 kb on + strand, within MPMX20_00495at 508.692 kb on - strand, within MPMX20_00495

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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506,518 - MPMX20_00492 0.87 -0.2
506,532 + MPMX20_00492 0.89 -2.6
506,558 + +2.4
506,558 + -2.0
506,558 + +1.9
506,566 - -2.7
506,566 - -0.6
506,568 - -1.0
506,656 - -0.0
506,663 + +0.3
506,663 + +1.4
506,687 + MPMX20_00493 0.14 +1.6
506,689 + MPMX20_00493 0.14 -1.3
506,697 - MPMX20_00493 0.16 -1.0
506,743 + MPMX20_00493 0.24 -0.8
506,763 - MPMX20_00493 0.28 -0.9
506,819 - MPMX20_00493 0.38 -0.4
506,915 + MPMX20_00493 0.55 +3.4
506,969 + MPMX20_00493 0.65 -1.7
506,979 + MPMX20_00493 0.66 +0.6
506,987 - MPMX20_00493 0.68 +0.2
507,003 + MPMX20_00493 0.71 -3.8
507,006 - MPMX20_00493 0.71 +1.4
507,008 + MPMX20_00493 0.72 -2.2
507,011 - MPMX20_00493 0.72 +0.8
507,016 - MPMX20_00493 0.73 -1.2
507,116 - -0.3
507,130 - +0.8
507,148 + +1.3
507,148 + +0.1
507,169 - -1.8
507,181 + +0.4
507,181 + +2.4
507,235 + -1.5
507,300 + -1.4
507,300 + +0.3
507,300 + -0.2
507,300 + -1.0
507,301 + -0.2
507,305 + +0.7
507,308 - +1.5
507,308 - -0.1
507,310 + +1.4
507,313 - -1.8
507,315 + +0.5
507,315 + +0.1
507,323 - -0.9
507,323 - -0.8
507,323 - +0.5
507,379 + +2.4
507,381 + +0.0
507,381 + -2.0
507,389 + +0.7
507,389 + +0.4
507,389 + +0.1
507,389 - -0.4
507,389 - -1.7
507,389 - +0.5
507,394 + +0.4
507,397 - +3.5
507,397 - +0.1
507,397 - +0.4
507,397 - +1.2
507,397 - -0.1
507,397 - -2.5
507,397 - +1.0
507,397 - -0.5
507,397 - +3.2
507,397 - +3.6
507,399 + +1.6
507,399 + +0.4
507,399 + -2.4
507,402 - +0.1
507,407 - +0.4
507,440 - +1.4
507,455 - +0.8
507,465 - -1.2
507,516 - MPMX20_00494 0.12 -0.7
507,567 - MPMX20_00494 0.37 -2.7
507,649 + MPMX20_00494 0.76 -2.2
507,669 - MPMX20_00494 0.86 -0.2
507,691 + -2.2
507,691 + -1.8
507,691 + +0.6
507,699 - +1.0
507,699 - +1.7
507,699 - +2.8
507,705 + +2.4
507,708 + +0.8
507,749 + -1.1
507,765 - -0.3
507,864 + -0.4
508,053 + MPMX20_00495 0.21 -1.2
508,053 + MPMX20_00495 0.21 +0.1
508,054 + MPMX20_00495 0.21 +0.1
508,061 - MPMX20_00495 0.21 -1.6
508,062 - MPMX20_00495 0.21 -0.8
508,078 - MPMX20_00495 0.23 -0.4
508,112 + MPMX20_00495 0.25 -1.1
508,118 - MPMX20_00495 0.26 -0.8
508,141 + MPMX20_00495 0.27 +0.2
508,141 + MPMX20_00495 0.27 +0.4
508,149 - MPMX20_00495 0.28 -2.5
508,149 - MPMX20_00495 0.28 -0.6
508,160 - MPMX20_00495 0.29 -2.9
508,231 + MPMX20_00495 0.34 +0.1
508,231 + MPMX20_00495 0.34 -0.8
508,231 + MPMX20_00495 0.34 -3.3
508,231 + MPMX20_00495 0.34 -1.8
508,231 + MPMX20_00495 0.34 -1.8
508,231 + MPMX20_00495 0.34 -3.8
508,231 + MPMX20_00495 0.34 -2.0
508,232 + MPMX20_00495 0.34 -2.0
508,232 + MPMX20_00495 0.34 +1.6
508,239 - MPMX20_00495 0.35 +3.9
508,239 - MPMX20_00495 0.35 -0.2
508,239 - MPMX20_00495 0.35 -3.4
508,239 - MPMX20_00495 0.35 -0.9
508,239 - MPMX20_00495 0.35 -0.2
508,285 + MPMX20_00495 0.38 -0.8
508,299 - MPMX20_00495 0.39 +0.3
508,379 - MPMX20_00495 0.45 +0.1
508,410 - MPMX20_00495 0.47 -0.9
508,425 + MPMX20_00495 0.49 -0.4
508,474 + MPMX20_00495 0.52 +0.8
508,557 + MPMX20_00495 0.58 -0.8
508,579 + MPMX20_00495 0.60 -2.8
508,656 + MPMX20_00495 0.66 +0.0
508,673 + MPMX20_00495 0.67 -3.0
508,692 - MPMX20_00495 0.68 +1.4

Or see this region's nucleotide sequence