Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00393

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00391 and MPMX20_00392 overlap by 4 nucleotidesMPMX20_00392 and MPMX20_00393 are separated by 119 nucleotidesMPMX20_00393 and MPMX20_00394 overlap by 4 nucleotidesMPMX20_00394 and MPMX20_00395 overlap by 56 nucleotidesMPMX20_00395 and MPMX20_00396 are separated by 17 nucleotides MPMX20_00391: MPMX20_00391 - hypothetical protein, at 407,894 to 408,397 _00391 MPMX20_00392: MPMX20_00392 - hypothetical protein, at 408,394 to 408,798 _00392 MPMX20_00393: MPMX20_00393 - hypothetical protein, at 408,918 to 409,469 _00393 MPMX20_00394: MPMX20_00394 - hypothetical protein, at 409,466 to 410,035 _00394 MPMX20_00395: MPMX20_00395 - hypothetical protein, at 409,980 to 410,216 _00395 MPMX20_00396: MPMX20_00396 - putative cyclic di-GMP phosphodiesterase PdeG, at 410,234 to 411,202 _00396 Position (kb) 408 409 410Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 407.926 kb on + strandat 407.945 kb on + strand, within MPMX20_00391at 407.946 kb on + strand, within MPMX20_00391at 407.964 kb on + strand, within MPMX20_00391at 407.989 kb on - strand, within MPMX20_00391at 408.162 kb on + strand, within MPMX20_00391at 408.171 kb on + strand, within MPMX20_00391at 408.191 kb on - strand, within MPMX20_00391at 408.197 kb on - strand, within MPMX20_00391at 408.233 kb on - strand, within MPMX20_00391at 408.249 kb on + strand, within MPMX20_00391at 408.249 kb on + strand, within MPMX20_00391at 408.361 kb on + strandat 408.366 kb on + strandat 408.366 kb on + strandat 408.366 kb on + strandat 408.374 kb on - strandat 408.374 kb on - strandat 408.374 kb on - strandat 408.374 kb on - strandat 408.444 kb on + strand, within MPMX20_00392at 408.468 kb on + strand, within MPMX20_00392at 408.492 kb on + strand, within MPMX20_00392at 408.515 kb on - strand, within MPMX20_00392at 408.534 kb on - strand, within MPMX20_00392at 408.560 kb on + strand, within MPMX20_00392at 408.560 kb on + strand, within MPMX20_00392at 408.564 kb on + strand, within MPMX20_00392at 408.711 kb on - strand, within MPMX20_00392at 408.731 kb on - strand, within MPMX20_00392at 408.743 kb on + strand, within MPMX20_00392at 408.794 kb on + strandat 408.806 kb on + strandat 408.806 kb on + strandat 408.814 kb on - strandat 408.868 kb on - strandat 408.916 kb on - strandat 408.916 kb on - strandat 408.925 kb on - strandat 409.032 kb on + strand, within MPMX20_00393at 409.063 kb on - strand, within MPMX20_00393at 409.063 kb on - strand, within MPMX20_00393at 409.064 kb on - strand, within MPMX20_00393at 409.074 kb on + strand, within MPMX20_00393at 409.082 kb on - strand, within MPMX20_00393at 409.138 kb on - strand, within MPMX20_00393at 409.169 kb on + strand, within MPMX20_00393at 409.265 kb on - strand, within MPMX20_00393at 409.274 kb on + strand, within MPMX20_00393at 409.276 kb on + strand, within MPMX20_00393at 409.329 kb on + strand, within MPMX20_00393at 409.409 kb on - strand, within MPMX20_00393at 409.485 kb on + strandat 409.488 kb on - strandat 409.493 kb on - strandat 409.498 kb on - strandat 409.564 kb on + strand, within MPMX20_00394at 409.564 kb on + strand, within MPMX20_00394at 409.564 kb on + strand, within MPMX20_00394at 409.576 kb on + strand, within MPMX20_00394at 409.611 kb on + strand, within MPMX20_00394at 409.617 kb on - strand, within MPMX20_00394at 409.642 kb on - strand, within MPMX20_00394at 409.652 kb on - strand, within MPMX20_00394at 409.691 kb on + strand, within MPMX20_00394at 409.809 kb on + strand, within MPMX20_00394at 409.809 kb on - strand, within MPMX20_00394at 409.817 kb on - strand, within MPMX20_00394at 409.829 kb on - strand, within MPMX20_00394at 409.831 kb on + strand, within MPMX20_00394at 409.844 kb on + strand, within MPMX20_00394at 409.885 kb on + strand, within MPMX20_00394at 409.885 kb on + strand, within MPMX20_00394at 409.919 kb on - strand, within MPMX20_00394at 410.018 kb on + strandat 410.026 kb on - strandat 410.076 kb on + strand, within MPMX20_00395at 410.099 kb on + strand, within MPMX20_00395at 410.099 kb on + strand, within MPMX20_00395at 410.114 kb on + strand, within MPMX20_00395at 410.116 kb on + strand, within MPMX20_00395at 410.151 kb on + strand, within MPMX20_00395at 410.193 kb on + strandat 410.201 kb on - strandat 410.313 kb on - strandat 410.321 kb on - strandat 410.330 kb on - strandat 410.350 kb on + strand, within MPMX20_00396at 410.371 kb on + strand, within MPMX20_00396at 410.406 kb on + strand, within MPMX20_00396at 410.409 kb on - strand, within MPMX20_00396at 410.414 kb on - strand, within MPMX20_00396at 410.418 kb on - strand, within MPMX20_00396at 410.428 kb on + strand, within MPMX20_00396at 410.428 kb on + strand, within MPMX20_00396

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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407,926 + +0.6
407,945 + MPMX20_00391 0.10 -0.3
407,946 + MPMX20_00391 0.10 -1.9
407,964 + MPMX20_00391 0.14 -0.6
407,989 - MPMX20_00391 0.19 -1.9
408,162 + MPMX20_00391 0.53 -0.9
408,171 + MPMX20_00391 0.55 -2.9
408,191 - MPMX20_00391 0.59 -2.1
408,197 - MPMX20_00391 0.60 -1.6
408,233 - MPMX20_00391 0.67 -1.8
408,249 + MPMX20_00391 0.70 -0.4
408,249 + MPMX20_00391 0.70 +0.6
408,361 + -1.0
408,366 + +0.3
408,366 + -2.3
408,366 + -0.5
408,374 - +0.5
408,374 - +0.2
408,374 - -2.5
408,374 - -1.1
408,444 + MPMX20_00392 0.12 -1.2
408,468 + MPMX20_00392 0.18 -0.2
408,492 + MPMX20_00392 0.24 +0.7
408,515 - MPMX20_00392 0.30 -1.2
408,534 - MPMX20_00392 0.35 -2.3
408,560 + MPMX20_00392 0.41 -2.8
408,560 + MPMX20_00392 0.41 +1.6
408,564 + MPMX20_00392 0.42 +1.0
408,711 - MPMX20_00392 0.78 +0.4
408,731 - MPMX20_00392 0.83 +0.0
408,743 + MPMX20_00392 0.86 +0.4
408,794 + +0.6
408,806 + +1.2
408,806 + +0.9
408,814 - +1.9
408,868 - -1.7
408,916 - -0.5
408,916 - -0.8
408,925 - +2.7
409,032 + MPMX20_00393 0.21 -0.2
409,063 - MPMX20_00393 0.26 -1.1
409,063 - MPMX20_00393 0.26 -2.7
409,064 - MPMX20_00393 0.26 -1.7
409,074 + MPMX20_00393 0.28 -1.0
409,082 - MPMX20_00393 0.30 -1.2
409,138 - MPMX20_00393 0.40 +0.1
409,169 + MPMX20_00393 0.45 -0.1
409,265 - MPMX20_00393 0.63 -2.3
409,274 + MPMX20_00393 0.64 -2.3
409,276 + MPMX20_00393 0.65 -1.4
409,329 + MPMX20_00393 0.74 -0.2
409,409 - MPMX20_00393 0.89 -2.8
409,485 + -0.2
409,488 - +1.4
409,493 - -0.2
409,498 - -0.4
409,564 + MPMX20_00394 0.17 +2.1
409,564 + MPMX20_00394 0.17 -0.0
409,564 + MPMX20_00394 0.17 -0.9
409,576 + MPMX20_00394 0.19 -2.2
409,611 + MPMX20_00394 0.25 +1.5
409,617 - MPMX20_00394 0.26 -0.6
409,642 - MPMX20_00394 0.31 -1.4
409,652 - MPMX20_00394 0.33 +0.2
409,691 + MPMX20_00394 0.39 +4.3
409,809 + MPMX20_00394 0.60 -1.1
409,809 - MPMX20_00394 0.60 +0.2
409,817 - MPMX20_00394 0.62 -0.4
409,829 - MPMX20_00394 0.64 -1.9
409,831 + MPMX20_00394 0.64 -3.1
409,844 + MPMX20_00394 0.66 -1.6
409,885 + MPMX20_00394 0.74 -2.2
409,885 + MPMX20_00394 0.74 -1.1
409,919 - MPMX20_00394 0.79 -0.9
410,018 + +0.1
410,026 - -2.7
410,076 + MPMX20_00395 0.41 +1.1
410,099 + MPMX20_00395 0.50 -3.5
410,099 + MPMX20_00395 0.50 +0.1
410,114 + MPMX20_00395 0.57 -0.3
410,116 + MPMX20_00395 0.57 +0.3
410,151 + MPMX20_00395 0.72 -1.3
410,193 + -1.9
410,201 - -0.2
410,313 - +1.1
410,321 - -2.0
410,330 - -0.2
410,350 + MPMX20_00396 0.12 -2.3
410,371 + MPMX20_00396 0.14 +0.8
410,406 + MPMX20_00396 0.18 -2.7
410,409 - MPMX20_00396 0.18 -0.6
410,414 - MPMX20_00396 0.19 -3.1
410,418 - MPMX20_00396 0.19 +0.0
410,428 + MPMX20_00396 0.20 +1.5
410,428 + MPMX20_00396 0.20 -2.9

Or see this region's nucleotide sequence