Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00236

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00235 and MPMX20_00236 are separated by 114 nucleotidesMPMX20_00236 and MPMX20_00237 are separated by 134 nucleotides MPMX20_00235: MPMX20_00235 - Methionine synthase, at 248,334 to 252,017 _00235 MPMX20_00236: MPMX20_00236 - hypothetical protein, at 252,132 to 253,763 _00236 MPMX20_00237: MPMX20_00237 - Dual-specificity RNA pseudouridine synthase RluF, at 253,898 to 254,767 _00237 Position (kb) 252 253 254Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 251.194 kb on + strand, within MPMX20_00235at 251.202 kb on - strand, within MPMX20_00235at 251.202 kb on - strand, within MPMX20_00235at 251.202 kb on - strand, within MPMX20_00235at 251.214 kb on + strand, within MPMX20_00235at 251.229 kb on + strand, within MPMX20_00235at 251.259 kb on + strand, within MPMX20_00235at 251.269 kb on - strand, within MPMX20_00235at 251.308 kb on + strand, within MPMX20_00235at 251.418 kb on - strand, within MPMX20_00235at 251.418 kb on - strand, within MPMX20_00235at 251.448 kb on + strand, within MPMX20_00235at 251.470 kb on + strand, within MPMX20_00235at 251.619 kb on + strand, within MPMX20_00235at 251.634 kb on + strand, within MPMX20_00235at 251.739 kb on + strandat 251.739 kb on + strandat 251.747 kb on - strandat 251.758 kb on + strandat 251.758 kb on + strandat 251.766 kb on - strandat 251.766 kb on - strandat 251.766 kb on - strandat 251.788 kb on + strandat 251.826 kb on - strandat 251.848 kb on + strandat 251.915 kb on + strandat 251.946 kb on - strandat 251.948 kb on + strandat 251.948 kb on + strandat 251.948 kb on + strandat 251.955 kb on + strandat 251.955 kb on + strandat 251.956 kb on - strandat 251.956 kb on - strandat 251.964 kb on - strandat 251.991 kb on - strandat 252.082 kb on + strandat 252.082 kb on + strandat 252.082 kb on + strandat 252.090 kb on - strandat 252.090 kb on - strandat 252.132 kb on + strandat 252.155 kb on + strandat 252.225 kb on + strandat 252.235 kb on - strandat 252.250 kb on + strandat 252.319 kb on + strand, within MPMX20_00236at 252.348 kb on - strand, within MPMX20_00236at 252.357 kb on - strand, within MPMX20_00236at 252.380 kb on + strand, within MPMX20_00236at 252.429 kb on - strand, within MPMX20_00236at 252.441 kb on - strand, within MPMX20_00236at 252.501 kb on - strand, within MPMX20_00236at 252.526 kb on - strand, within MPMX20_00236at 252.526 kb on - strand, within MPMX20_00236at 252.532 kb on + strand, within MPMX20_00236at 252.544 kb on + strand, within MPMX20_00236at 252.599 kb on + strand, within MPMX20_00236at 252.607 kb on - strand, within MPMX20_00236at 252.607 kb on - strand, within MPMX20_00236at 252.669 kb on + strand, within MPMX20_00236at 252.677 kb on - strand, within MPMX20_00236at 252.688 kb on + strand, within MPMX20_00236at 252.710 kb on + strand, within MPMX20_00236at 252.771 kb on - strand, within MPMX20_00236at 252.783 kb on - strand, within MPMX20_00236at 252.809 kb on + strand, within MPMX20_00236at 252.920 kb on + strand, within MPMX20_00236at 252.946 kb on - strand, within MPMX20_00236at 252.946 kb on - strand, within MPMX20_00236at 252.951 kb on - strand, within MPMX20_00236at 252.991 kb on + strand, within MPMX20_00236at 253.017 kb on + strand, within MPMX20_00236at 253.017 kb on + strand, within MPMX20_00236at 253.086 kb on + strand, within MPMX20_00236at 253.096 kb on + strand, within MPMX20_00236at 253.096 kb on + strand, within MPMX20_00236at 253.164 kb on + strand, within MPMX20_00236at 253.166 kb on - strand, within MPMX20_00236at 253.190 kb on + strand, within MPMX20_00236at 253.223 kb on + strand, within MPMX20_00236at 253.237 kb on + strand, within MPMX20_00236at 253.285 kb on - strand, within MPMX20_00236at 253.370 kb on + strand, within MPMX20_00236at 253.425 kb on - strand, within MPMX20_00236at 253.485 kb on - strand, within MPMX20_00236at 253.570 kb on + strand, within MPMX20_00236at 253.594 kb on - strand, within MPMX20_00236at 253.637 kb on - strandat 253.650 kb on + strandat 253.651 kb on + strandat 253.709 kb on + strandat 253.709 kb on + strandat 253.720 kb on + strandat 253.728 kb on - strandat 253.734 kb on + strandat 253.808 kb on + strandat 253.808 kb on + strandat 253.808 kb on + strandat 253.808 kb on + strandat 253.808 kb on + strandat 253.816 kb on - strandat 253.816 kb on - strandat 253.816 kb on - strandat 253.858 kb on + strandat 253.858 kb on + strandat 253.896 kb on - strandat 253.982 kb on + strandat 253.985 kb on - strand, within MPMX20_00237at 253.987 kb on + strand, within MPMX20_00237at 253.995 kb on - strand, within MPMX20_00237at 253.995 kb on - strand, within MPMX20_00237at 253.995 kb on - strand, within MPMX20_00237at 254.071 kb on - strand, within MPMX20_00237at 254.078 kb on - strand, within MPMX20_00237at 254.113 kb on + strand, within MPMX20_00237at 254.121 kb on - strand, within MPMX20_00237at 254.121 kb on - strand, within MPMX20_00237at 254.139 kb on + strand, within MPMX20_00237at 254.158 kb on + strand, within MPMX20_00237at 254.158 kb on + strand, within MPMX20_00237at 254.166 kb on - strand, within MPMX20_00237at 254.183 kb on - strand, within MPMX20_00237at 254.197 kb on - strand, within MPMX20_00237at 254.276 kb on - strand, within MPMX20_00237at 254.311 kb on - strand, within MPMX20_00237at 254.311 kb on - strand, within MPMX20_00237at 254.430 kb on + strand, within MPMX20_00237at 254.436 kb on + strand, within MPMX20_00237at 254.447 kb on + strand, within MPMX20_00237at 254.456 kb on + strand, within MPMX20_00237at 254.456 kb on - strand, within MPMX20_00237at 254.490 kb on - strand, within MPMX20_00237at 254.503 kb on + strand, within MPMX20_00237at 254.511 kb on - strand, within MPMX20_00237at 254.539 kb on - strand, within MPMX20_00237at 254.584 kb on + strand, within MPMX20_00237at 254.584 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.601 kb on - strand, within MPMX20_00237at 254.601 kb on - strand, within MPMX20_00237at 254.601 kb on - strand, within MPMX20_00237at 254.677 kb on + strand, within MPMX20_00237

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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251,194 + MPMX20_00235 0.78 +0.8
251,202 - MPMX20_00235 0.78 +0.1
251,202 - MPMX20_00235 0.78 -1.3
251,202 - MPMX20_00235 0.78 +0.3
251,214 + MPMX20_00235 0.78 +0.2
251,229 + MPMX20_00235 0.79 -1.2
251,259 + MPMX20_00235 0.79 -2.7
251,269 - MPMX20_00235 0.80 -1.4
251,308 + MPMX20_00235 0.81 -0.5
251,418 - MPMX20_00235 0.84 -2.9
251,418 - MPMX20_00235 0.84 -0.1
251,448 + MPMX20_00235 0.85 -0.9
251,470 + MPMX20_00235 0.85 -3.0
251,619 + MPMX20_00235 0.89 -0.9
251,634 + MPMX20_00235 0.90 -2.0
251,739 + +0.4
251,739 + +0.4
251,747 - -2.3
251,758 + +0.3
251,758 + +0.8
251,766 - +2.4
251,766 - -0.3
251,766 - -1.8
251,788 + -2.4
251,826 - -0.2
251,848 + -1.1
251,915 + -1.7
251,946 - +0.4
251,948 + +0.8
251,948 + -0.1
251,948 + -1.6
251,955 + -1.7
251,955 + -3.0
251,956 - +0.8
251,956 - +1.0
251,964 - +0.5
251,991 - +2.6
252,082 + -3.1
252,082 + -0.7
252,082 + -0.4
252,090 - -0.2
252,090 - +0.2
252,132 + +1.2
252,155 + -1.6
252,225 + -1.1
252,235 - -0.1
252,250 + +1.3
252,319 + MPMX20_00236 0.11 -2.8
252,348 - MPMX20_00236 0.13 +2.4
252,357 - MPMX20_00236 0.14 -0.5
252,380 + MPMX20_00236 0.15 -0.9
252,429 - MPMX20_00236 0.18 +1.0
252,441 - MPMX20_00236 0.19 -0.8
252,501 - MPMX20_00236 0.23 -2.8
252,526 - MPMX20_00236 0.24 -2.1
252,526 - MPMX20_00236 0.24 -1.9
252,532 + MPMX20_00236 0.25 -0.2
252,544 + MPMX20_00236 0.25 -1.8
252,599 + MPMX20_00236 0.29 +0.9
252,607 - MPMX20_00236 0.29 -1.7
252,607 - MPMX20_00236 0.29 +1.1
252,669 + MPMX20_00236 0.33 +2.0
252,677 - MPMX20_00236 0.33 +0.3
252,688 + MPMX20_00236 0.34 -0.8
252,710 + MPMX20_00236 0.35 +0.8
252,771 - MPMX20_00236 0.39 -1.5
252,783 - MPMX20_00236 0.40 -0.4
252,809 + MPMX20_00236 0.41 +1.4
252,920 + MPMX20_00236 0.48 -2.1
252,946 - MPMX20_00236 0.50 -1.2
252,946 - MPMX20_00236 0.50 -0.4
252,951 - MPMX20_00236 0.50 -3.4
252,991 + MPMX20_00236 0.53 -0.4
253,017 + MPMX20_00236 0.54 -1.1
253,017 + MPMX20_00236 0.54 -1.2
253,086 + MPMX20_00236 0.58 +0.0
253,096 + MPMX20_00236 0.59 +0.4
253,096 + MPMX20_00236 0.59 +0.1
253,164 + MPMX20_00236 0.63 -0.5
253,166 - MPMX20_00236 0.63 -1.0
253,190 + MPMX20_00236 0.65 -2.6
253,223 + MPMX20_00236 0.67 -2.0
253,237 + MPMX20_00236 0.68 -1.2
253,285 - MPMX20_00236 0.71 -3.3
253,370 + MPMX20_00236 0.76 +1.3
253,425 - MPMX20_00236 0.79 -2.5
253,485 - MPMX20_00236 0.83 -1.1
253,570 + MPMX20_00236 0.88 -0.8
253,594 - MPMX20_00236 0.90 -0.1
253,637 - -1.4
253,650 + -2.2
253,651 + +0.1
253,709 + -2.1
253,709 + -1.8
253,720 + -2.3
253,728 - +0.8
253,734 + +0.9
253,808 + -2.2
253,808 + -0.8
253,808 + -0.3
253,808 + -1.1
253,808 + +0.1
253,816 - -0.0
253,816 - -0.3
253,816 - -0.2
253,858 + +0.4
253,858 + -1.1
253,896 - -0.7
253,982 + -2.4
253,985 - MPMX20_00237 0.10 +1.8
253,987 + MPMX20_00237 0.10 -0.5
253,995 - MPMX20_00237 0.11 +0.0
253,995 - MPMX20_00237 0.11 -1.5
253,995 - MPMX20_00237 0.11 -1.2
254,071 - MPMX20_00237 0.20 -0.4
254,078 - MPMX20_00237 0.21 -1.8
254,113 + MPMX20_00237 0.25 +2.4
254,121 - MPMX20_00237 0.26 -3.0
254,121 - MPMX20_00237 0.26 -2.1
254,139 + MPMX20_00237 0.28 +1.4
254,158 + MPMX20_00237 0.30 -0.2
254,158 + MPMX20_00237 0.30 +0.4
254,166 - MPMX20_00237 0.31 -0.9
254,183 - MPMX20_00237 0.33 -3.0
254,197 - MPMX20_00237 0.34 +0.1
254,276 - MPMX20_00237 0.43 -0.1
254,311 - MPMX20_00237 0.47 -0.0
254,311 - MPMX20_00237 0.47 +0.1
254,430 + MPMX20_00237 0.61 +0.1
254,436 + MPMX20_00237 0.62 +0.4
254,447 + MPMX20_00237 0.63 +1.8
254,456 + MPMX20_00237 0.64 -1.0
254,456 - MPMX20_00237 0.64 -2.5
254,490 - MPMX20_00237 0.68 +1.4
254,503 + MPMX20_00237 0.70 +1.4
254,511 - MPMX20_00237 0.70 -0.3
254,539 - MPMX20_00237 0.74 -1.1
254,584 + MPMX20_00237 0.79 -1.3
254,584 + MPMX20_00237 0.79 -1.9
254,593 + MPMX20_00237 0.80 -0.1
254,593 + MPMX20_00237 0.80 +0.2
254,593 + MPMX20_00237 0.80 -1.1
254,593 + MPMX20_00237 0.80 -2.1
254,593 + MPMX20_00237 0.80 +0.6
254,593 + MPMX20_00237 0.80 -0.6
254,601 - MPMX20_00237 0.81 +0.5
254,601 - MPMX20_00237 0.81 -0.7
254,601 - MPMX20_00237 0.81 +1.9
254,677 + MPMX20_00237 0.90 -1.7

Or see this region's nucleotide sequence