Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00225

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00223 and MPMX20_00224 are separated by 11 nucleotidesMPMX20_00224 and MPMX20_00225 are separated by 43 nucleotidesMPMX20_00225 and MPMX20_00226 are separated by 15 nucleotides MPMX20_00223: MPMX20_00223 - DNA-binding protein HU-alpha, at 231,822 to 232,094 _00223 MPMX20_00224: MPMX20_00224 - hypothetical protein, at 232,106 to 232,798 _00224 MPMX20_00225: MPMX20_00225 - Phosphoribosylamine--glycine ligase, at 232,842 to 234,134 _00225 MPMX20_00226: MPMX20_00226 - Bifunctional purine biosynthesis protein PurH, at 234,150 to 235,739 _00226 Position (kb) 232 233 234 235Strain fitness (log2 ratio) -2 -1 0 1 2 3at 231.876 kb on + strand, within MPMX20_00223at 231.877 kb on - strand, within MPMX20_00223at 231.881 kb on + strand, within MPMX20_00223at 231.881 kb on + strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.943 kb on + strand, within MPMX20_00223at 231.961 kb on - strand, within MPMX20_00223at 231.961 kb on - strand, within MPMX20_00223at 232.183 kb on - strand, within MPMX20_00224at 232.246 kb on + strand, within MPMX20_00224at 232.300 kb on + strand, within MPMX20_00224at 232.329 kb on + strand, within MPMX20_00224at 232.404 kb on + strand, within MPMX20_00224at 232.449 kb on + strand, within MPMX20_00224at 232.457 kb on - strand, within MPMX20_00224at 232.457 kb on - strand, within MPMX20_00224at 232.481 kb on - strand, within MPMX20_00224at 232.540 kb on + strand, within MPMX20_00224at 232.548 kb on - strand, within MPMX20_00224at 232.566 kb on + strand, within MPMX20_00224at 232.574 kb on - strand, within MPMX20_00224at 232.607 kb on + strand, within MPMX20_00224at 232.615 kb on - strand, within MPMX20_00224at 232.622 kb on + strand, within MPMX20_00224at 232.651 kb on - strand, within MPMX20_00224at 232.684 kb on + strand, within MPMX20_00224at 232.692 kb on - strand, within MPMX20_00224at 232.821 kb on + strandat 232.925 kb on + strandat 232.925 kb on + strandat 232.946 kb on - strandat 232.946 kb on - strandat 232.946 kb on - strandat 232.957 kb on + strandat 232.965 kb on - strandat 232.965 kb on - strandat 232.965 kb on - strandat 232.982 kb on + strand, within MPMX20_00225at 232.982 kb on + strand, within MPMX20_00225at 232.982 kb on + strand, within MPMX20_00225at 232.982 kb on + strand, within MPMX20_00225at 232.988 kb on - strand, within MPMX20_00225at 232.988 kb on - strand, within MPMX20_00225at 232.990 kb on - strand, within MPMX20_00225at 233.140 kb on + strand, within MPMX20_00225at 233.149 kb on + strand, within MPMX20_00225at 233.164 kb on + strand, within MPMX20_00225at 233.224 kb on - strand, within MPMX20_00225at 233.224 kb on - strand, within MPMX20_00225at 233.315 kb on + strand, within MPMX20_00225at 233.323 kb on - strand, within MPMX20_00225at 233.323 kb on - strand, within MPMX20_00225at 233.328 kb on - strand, within MPMX20_00225at 233.341 kb on + strand, within MPMX20_00225at 233.348 kb on - strand, within MPMX20_00225at 233.387 kb on + strand, within MPMX20_00225at 233.392 kb on + strand, within MPMX20_00225at 233.400 kb on + strand, within MPMX20_00225at 233.400 kb on - strand, within MPMX20_00225at 233.420 kb on + strand, within MPMX20_00225at 233.625 kb on + strand, within MPMX20_00225at 233.625 kb on + strand, within MPMX20_00225at 233.633 kb on - strand, within MPMX20_00225at 233.633 kb on - strand, within MPMX20_00225at 233.633 kb on - strand, within MPMX20_00225at 233.741 kb on + strand, within MPMX20_00225at 233.744 kb on - strand, within MPMX20_00225at 233.744 kb on - strand, within MPMX20_00225at 233.744 kb on - strand, within MPMX20_00225at 233.747 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.787 kb on + strand, within MPMX20_00225at 233.827 kb on + strand, within MPMX20_00225at 233.835 kb on - strand, within MPMX20_00225at 233.844 kb on + strand, within MPMX20_00225at 233.852 kb on - strand, within MPMX20_00225at 233.886 kb on + strand, within MPMX20_00225at 233.915 kb on + strand, within MPMX20_00225at 234.011 kb on - strandat 234.038 kb on - strandat 234.039 kb on - strandat 234.039 kb on - strandat 234.180 kb on + strandat 234.248 kb on + strandat 234.248 kb on + strandat 234.258 kb on + strandat 234.390 kb on - strand, within MPMX20_00226at 234.396 kb on + strand, within MPMX20_00226at 234.396 kb on + strand, within MPMX20_00226at 234.396 kb on - strand, within MPMX20_00226at 234.404 kb on - strand, within MPMX20_00226at 234.404 kb on - strand, within MPMX20_00226at 234.404 kb on - strand, within MPMX20_00226at 234.404 kb on - strand, within MPMX20_00226at 234.421 kb on + strand, within MPMX20_00226at 234.606 kb on + strand, within MPMX20_00226at 234.606 kb on + strand, within MPMX20_00226at 234.636 kb on - strand, within MPMX20_00226at 234.749 kb on - strand, within MPMX20_00226at 234.785 kb on - strand, within MPMX20_00226at 234.921 kb on + strand, within MPMX20_00226at 234.929 kb on - strand, within MPMX20_00226at 234.929 kb on - strand, within MPMX20_00226at 234.937 kb on + strand, within MPMX20_00226at 234.969 kb on + strand, within MPMX20_00226at 234.977 kb on - strand, within MPMX20_00226at 234.977 kb on - strand, within MPMX20_00226at 234.985 kb on - strand, within MPMX20_00226at 235.021 kb on + strand, within MPMX20_00226at 235.042 kb on - strand, within MPMX20_00226at 235.060 kb on + strand, within MPMX20_00226at 235.068 kb on - strand, within MPMX20_00226at 235.099 kb on + strand, within MPMX20_00226at 235.110 kb on + strand, within MPMX20_00226at 235.118 kb on + strand, within MPMX20_00226at 235.118 kb on + strand, within MPMX20_00226at 235.118 kb on + strand, within MPMX20_00226at 235.118 kb on - strand, within MPMX20_00226at 235.126 kb on - strand, within MPMX20_00226at 235.126 kb on - strand, within MPMX20_00226

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
231,876 + MPMX20_00223 0.20 +3.5
231,877 - MPMX20_00223 0.20 +0.9
231,881 + MPMX20_00223 0.22 +1.9
231,881 + MPMX20_00223 0.22 +0.7
231,889 - MPMX20_00223 0.25 -1.2
231,889 - MPMX20_00223 0.25 +0.4
231,889 - MPMX20_00223 0.25 +0.5
231,889 - MPMX20_00223 0.25 +2.7
231,889 - MPMX20_00223 0.25 +1.3
231,943 + MPMX20_00223 0.44 -0.2
231,961 - MPMX20_00223 0.51 +2.4
231,961 - MPMX20_00223 0.51 +1.3
232,183 - MPMX20_00224 0.11 -1.0
232,246 + MPMX20_00224 0.20 +1.9
232,300 + MPMX20_00224 0.28 +2.4
232,329 + MPMX20_00224 0.32 +0.3
232,404 + MPMX20_00224 0.43 +2.7
232,449 + MPMX20_00224 0.49 -1.4
232,457 - MPMX20_00224 0.51 +0.4
232,457 - MPMX20_00224 0.51 -2.2
232,481 - MPMX20_00224 0.54 +0.9
232,540 + MPMX20_00224 0.63 -0.8
232,548 - MPMX20_00224 0.64 +3.4
232,566 + MPMX20_00224 0.66 +0.8
232,574 - MPMX20_00224 0.68 +0.4
232,607 + MPMX20_00224 0.72 -2.1
232,615 - MPMX20_00224 0.73 -2.6
232,622 + MPMX20_00224 0.74 -1.4
232,651 - MPMX20_00224 0.79 -0.8
232,684 + MPMX20_00224 0.83 +1.6
232,692 - MPMX20_00224 0.85 -1.2
232,821 + -2.2
232,925 + -0.4
232,925 + +0.0
232,946 - -0.4
232,946 - +0.6
232,946 - -1.6
232,957 + +1.1
232,965 - -0.4
232,965 - -1.1
232,965 - -0.2
232,982 + MPMX20_00225 0.11 -0.6
232,982 + MPMX20_00225 0.11 -2.2
232,982 + MPMX20_00225 0.11 -2.2
232,982 + MPMX20_00225 0.11 +0.8
232,988 - MPMX20_00225 0.11 -2.6
232,988 - MPMX20_00225 0.11 -2.4
232,990 - MPMX20_00225 0.11 -2.0
233,140 + MPMX20_00225 0.23 -2.5
233,149 + MPMX20_00225 0.24 +2.4
233,164 + MPMX20_00225 0.25 -1.5
233,224 - MPMX20_00225 0.30 -1.1
233,224 - MPMX20_00225 0.30 +2.4
233,315 + MPMX20_00225 0.37 -2.0
233,323 - MPMX20_00225 0.37 -0.2
233,323 - MPMX20_00225 0.37 +0.4
233,328 - MPMX20_00225 0.38 -1.3
233,341 + MPMX20_00225 0.39 +0.4
233,348 - MPMX20_00225 0.39 -1.0
233,387 + MPMX20_00225 0.42 +0.8
233,392 + MPMX20_00225 0.43 +0.0
233,400 + MPMX20_00225 0.43 +0.8
233,400 - MPMX20_00225 0.43 -2.0
233,420 + MPMX20_00225 0.45 -1.4
233,625 + MPMX20_00225 0.61 +1.4
233,625 + MPMX20_00225 0.61 +0.4
233,633 - MPMX20_00225 0.61 -2.7
233,633 - MPMX20_00225 0.61 -2.1
233,633 - MPMX20_00225 0.61 -1.5
233,741 + MPMX20_00225 0.70 -0.6
233,744 - MPMX20_00225 0.70 -0.0
233,744 - MPMX20_00225 0.70 +2.4
233,744 - MPMX20_00225 0.70 -0.2
233,747 + MPMX20_00225 0.70 -1.1
233,787 + MPMX20_00225 0.73 -1.7
233,787 + MPMX20_00225 0.73 -0.6
233,787 + MPMX20_00225 0.73 -1.0
233,787 + MPMX20_00225 0.73 +0.0
233,787 + MPMX20_00225 0.73 -0.3
233,827 + MPMX20_00225 0.76 -1.0
233,835 - MPMX20_00225 0.77 +1.4
233,844 + MPMX20_00225 0.77 -0.3
233,852 - MPMX20_00225 0.78 +1.4
233,886 + MPMX20_00225 0.81 -1.4
233,915 + MPMX20_00225 0.83 -1.0
234,011 - +0.4
234,038 - -2.2
234,039 - -0.4
234,039 - -1.0
234,180 + +0.4
234,248 + -0.8
234,248 + -1.7
234,258 + -1.8
234,390 - MPMX20_00226 0.15 +2.4
234,396 + MPMX20_00226 0.15 +0.4
234,396 + MPMX20_00226 0.15 -0.8
234,396 - MPMX20_00226 0.15 -0.4
234,404 - MPMX20_00226 0.16 -0.6
234,404 - MPMX20_00226 0.16 -1.6
234,404 - MPMX20_00226 0.16 -1.8
234,404 - MPMX20_00226 0.16 +0.0
234,421 + MPMX20_00226 0.17 -2.0
234,606 + MPMX20_00226 0.29 -2.4
234,606 + MPMX20_00226 0.29 -2.0
234,636 - MPMX20_00226 0.31 -0.6
234,749 - MPMX20_00226 0.38 -0.8
234,785 - MPMX20_00226 0.40 -1.2
234,921 + MPMX20_00226 0.48 -1.1
234,929 - MPMX20_00226 0.49 -1.1
234,929 - MPMX20_00226 0.49 +0.7
234,937 + MPMX20_00226 0.49 -2.5
234,969 + MPMX20_00226 0.52 -2.4
234,977 - MPMX20_00226 0.52 -1.9
234,977 - MPMX20_00226 0.52 -0.7
234,985 - MPMX20_00226 0.53 -1.3
235,021 + MPMX20_00226 0.55 -1.7
235,042 - MPMX20_00226 0.56 -0.2
235,060 + MPMX20_00226 0.57 -0.2
235,068 - MPMX20_00226 0.58 -2.2
235,099 + MPMX20_00226 0.60 -2.4
235,110 + MPMX20_00226 0.60 +0.3
235,118 + MPMX20_00226 0.61 +1.4
235,118 + MPMX20_00226 0.61 +0.4
235,118 + MPMX20_00226 0.61 -0.8
235,118 - MPMX20_00226 0.61 -0.6
235,126 - MPMX20_00226 0.61 +1.4
235,126 - MPMX20_00226 0.61 +0.4

Or see this region's nucleotide sequence