Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00130

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00129 and MPMX20_00130 overlap by 4 nucleotidesMPMX20_00130 and MPMX20_00131 overlap by 4 nucleotides MPMX20_00129: MPMX20_00129 - L-lactate dehydrogenase, at 129,829 to 131,016 _00129 MPMX20_00130: MPMX20_00130 - Putative L-lactate dehydrogenase operon regulatory protein, at 131,013 to 131,786 _00130 MPMX20_00131: MPMX20_00131 - L-lactate permease, at 131,783 to 133,438 _00131 Position (kb) 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 130.013 kb on + strand, within MPMX20_00129at 130.021 kb on - strand, within MPMX20_00129at 130.043 kb on - strand, within MPMX20_00129at 130.160 kb on + strand, within MPMX20_00129at 130.194 kb on + strand, within MPMX20_00129at 130.201 kb on + strand, within MPMX20_00129at 130.209 kb on - strand, within MPMX20_00129at 130.211 kb on - strand, within MPMX20_00129at 130.211 kb on - strand, within MPMX20_00129at 130.233 kb on - strand, within MPMX20_00129at 130.280 kb on - strand, within MPMX20_00129at 130.280 kb on - strand, within MPMX20_00129at 130.297 kb on + strand, within MPMX20_00129at 130.303 kb on + strand, within MPMX20_00129at 130.303 kb on + strand, within MPMX20_00129at 130.370 kb on - strand, within MPMX20_00129at 130.409 kb on - strand, within MPMX20_00129at 130.464 kb on + strand, within MPMX20_00129at 130.558 kb on + strand, within MPMX20_00129at 130.563 kb on + strand, within MPMX20_00129at 130.563 kb on + strand, within MPMX20_00129at 130.563 kb on + strand, within MPMX20_00129at 130.563 kb on + strand, within MPMX20_00129at 130.571 kb on - strand, within MPMX20_00129at 130.571 kb on - strand, within MPMX20_00129at 130.571 kb on - strand, within MPMX20_00129at 130.571 kb on - strand, within MPMX20_00129at 130.576 kb on - strand, within MPMX20_00129at 130.580 kb on + strand, within MPMX20_00129at 130.580 kb on + strand, within MPMX20_00129at 130.588 kb on - strand, within MPMX20_00129at 130.588 kb on - strand, within MPMX20_00129at 130.599 kb on - strand, within MPMX20_00129at 130.599 kb on - strand, within MPMX20_00129at 130.636 kb on - strand, within MPMX20_00129at 130.643 kb on - strand, within MPMX20_00129at 130.668 kb on - strand, within MPMX20_00129at 130.669 kb on - strand, within MPMX20_00129at 130.683 kb on + strand, within MPMX20_00129at 130.704 kb on + strand, within MPMX20_00129at 130.704 kb on + strand, within MPMX20_00129at 130.712 kb on - strand, within MPMX20_00129at 130.749 kb on - strand, within MPMX20_00129at 130.832 kb on + strand, within MPMX20_00129at 130.841 kb on - strand, within MPMX20_00129at 130.853 kb on - strand, within MPMX20_00129at 130.904 kb on + strandat 130.914 kb on + strandat 130.922 kb on - strandat 130.933 kb on - strandat 131.025 kb on - strandat 131.104 kb on - strand, within MPMX20_00130at 131.112 kb on + strand, within MPMX20_00130at 131.126 kb on - strand, within MPMX20_00130at 131.126 kb on - strand, within MPMX20_00130at 131.230 kb on - strand, within MPMX20_00130at 131.236 kb on - strand, within MPMX20_00130at 131.268 kb on - strand, within MPMX20_00130at 131.270 kb on + strand, within MPMX20_00130at 131.298 kb on - strand, within MPMX20_00130at 131.298 kb on - strand, within MPMX20_00130at 131.298 kb on - strand, within MPMX20_00130at 131.346 kb on - strand, within MPMX20_00130at 131.359 kb on - strand, within MPMX20_00130at 131.376 kb on + strand, within MPMX20_00130at 131.384 kb on - strand, within MPMX20_00130at 131.395 kb on - strand, within MPMX20_00130at 131.397 kb on + strand, within MPMX20_00130at 131.501 kb on - strand, within MPMX20_00130at 131.549 kb on - strand, within MPMX20_00130at 131.554 kb on - strand, within MPMX20_00130at 131.556 kb on + strand, within MPMX20_00130at 131.556 kb on + strand, within MPMX20_00130at 131.589 kb on + strand, within MPMX20_00130at 131.603 kb on + strand, within MPMX20_00130at 131.614 kb on - strand, within MPMX20_00130at 131.619 kb on + strand, within MPMX20_00130at 131.663 kb on - strand, within MPMX20_00130at 131.773 kb on - strandat 131.798 kb on + strandat 131.818 kb on - strandat 131.818 kb on - strandat 131.820 kb on + strandat 131.828 kb on - strandat 131.843 kb on + strandat 131.843 kb on + strandat 131.851 kb on - strandat 131.856 kb on - strandat 131.879 kb on - strandat 131.882 kb on + strandat 131.892 kb on + strandat 131.918 kb on + strandat 132.016 kb on - strand, within MPMX20_00131at 132.086 kb on - strand, within MPMX20_00131at 132.134 kb on - strand, within MPMX20_00131at 132.148 kb on + strand, within MPMX20_00131at 132.150 kb on + strand, within MPMX20_00131at 132.158 kb on - strand, within MPMX20_00131at 132.160 kb on + strand, within MPMX20_00131at 132.168 kb on - strand, within MPMX20_00131at 132.168 kb on - strand, within MPMX20_00131at 132.188 kb on + strand, within MPMX20_00131at 132.188 kb on + strand, within MPMX20_00131at 132.188 kb on + strand, within MPMX20_00131at 132.196 kb on - strand, within MPMX20_00131at 132.221 kb on + strand, within MPMX20_00131at 132.237 kb on - strand, within MPMX20_00131at 132.237 kb on - strand, within MPMX20_00131at 132.248 kb on + strand, within MPMX20_00131at 132.248 kb on + strand, within MPMX20_00131at 132.267 kb on + strand, within MPMX20_00131at 132.267 kb on + strand, within MPMX20_00131at 132.296 kb on - strand, within MPMX20_00131at 132.310 kb on + strand, within MPMX20_00131at 132.310 kb on + strand, within MPMX20_00131at 132.350 kb on - strand, within MPMX20_00131at 132.371 kb on + strand, within MPMX20_00131at 132.428 kb on + strand, within MPMX20_00131at 132.440 kb on + strand, within MPMX20_00131at 132.448 kb on - strand, within MPMX20_00131at 132.471 kb on + strand, within MPMX20_00131at 132.472 kb on - strand, within MPMX20_00131at 132.568 kb on + strand, within MPMX20_00131at 132.583 kb on - strand, within MPMX20_00131at 132.607 kb on - strand, within MPMX20_00131at 132.649 kb on + strand, within MPMX20_00131at 132.654 kb on + strand, within MPMX20_00131at 132.657 kb on - strand, within MPMX20_00131at 132.657 kb on - strand, within MPMX20_00131at 132.727 kb on + strand, within MPMX20_00131at 132.783 kb on - strand, within MPMX20_00131

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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130,013 + MPMX20_00129 0.15 +1.3
130,021 - MPMX20_00129 0.16 +1.9
130,043 - MPMX20_00129 0.18 -1.3
130,160 + MPMX20_00129 0.28 +5.0
130,194 + MPMX20_00129 0.31 -0.6
130,201 + MPMX20_00129 0.31 +0.4
130,209 - MPMX20_00129 0.32 +0.1
130,211 - MPMX20_00129 0.32 -2.1
130,211 - MPMX20_00129 0.32 +0.8
130,233 - MPMX20_00129 0.34 -0.6
130,280 - MPMX20_00129 0.38 +0.1
130,280 - MPMX20_00129 0.38 -0.4
130,297 + MPMX20_00129 0.39 -3.2
130,303 + MPMX20_00129 0.40 +0.1
130,303 + MPMX20_00129 0.40 +0.1
130,370 - MPMX20_00129 0.46 -1.3
130,409 - MPMX20_00129 0.49 +2.4
130,464 + MPMX20_00129 0.53 -0.4
130,558 + MPMX20_00129 0.61 -1.9
130,563 + MPMX20_00129 0.62 +1.4
130,563 + MPMX20_00129 0.62 -1.9
130,563 + MPMX20_00129 0.62 +1.0
130,563 + MPMX20_00129 0.62 -2.8
130,571 - MPMX20_00129 0.62 +0.1
130,571 - MPMX20_00129 0.62 +1.3
130,571 - MPMX20_00129 0.62 -1.1
130,571 - MPMX20_00129 0.62 -2.0
130,576 - MPMX20_00129 0.63 +1.3
130,580 + MPMX20_00129 0.63 +0.1
130,580 + MPMX20_00129 0.63 -0.9
130,588 - MPMX20_00129 0.64 -0.4
130,588 - MPMX20_00129 0.64 -2.1
130,599 - MPMX20_00129 0.65 -1.8
130,599 - MPMX20_00129 0.65 -0.4
130,636 - MPMX20_00129 0.68 +0.9
130,643 - MPMX20_00129 0.69 -1.0
130,668 - MPMX20_00129 0.71 +0.6
130,669 - MPMX20_00129 0.71 -1.0
130,683 + MPMX20_00129 0.72 -0.6
130,704 + MPMX20_00129 0.74 +1.1
130,704 + MPMX20_00129 0.74 +0.6
130,712 - MPMX20_00129 0.74 -2.4
130,749 - MPMX20_00129 0.77 +0.1
130,832 + MPMX20_00129 0.84 +0.3
130,841 - MPMX20_00129 0.85 +0.6
130,853 - MPMX20_00129 0.86 -0.9
130,904 + +1.4
130,914 + -0.8
130,922 - -1.8
130,933 - -0.1
131,025 - -1.3
131,104 - MPMX20_00130 0.12 -0.7
131,112 + MPMX20_00130 0.13 -1.8
131,126 - MPMX20_00130 0.15 -2.8
131,126 - MPMX20_00130 0.15 -0.8
131,230 - MPMX20_00130 0.28 -1.7
131,236 - MPMX20_00130 0.29 -2.5
131,268 - MPMX20_00130 0.33 +2.4
131,270 + MPMX20_00130 0.33 -0.8
131,298 - MPMX20_00130 0.37 -1.7
131,298 - MPMX20_00130 0.37 +0.2
131,298 - MPMX20_00130 0.37 -1.9
131,346 - MPMX20_00130 0.43 +0.2
131,359 - MPMX20_00130 0.45 -0.6
131,376 + MPMX20_00130 0.47 +0.5
131,384 - MPMX20_00130 0.48 -2.3
131,395 - MPMX20_00130 0.49 +0.1
131,397 + MPMX20_00130 0.50 -1.5
131,501 - MPMX20_00130 0.63 -0.3
131,549 - MPMX20_00130 0.69 +0.3
131,554 - MPMX20_00130 0.70 -0.4
131,556 + MPMX20_00130 0.70 -1.4
131,556 + MPMX20_00130 0.70 -0.4
131,589 + MPMX20_00130 0.74 -0.4
131,603 + MPMX20_00130 0.76 -1.7
131,614 - MPMX20_00130 0.78 +0.1
131,619 + MPMX20_00130 0.78 -3.6
131,663 - MPMX20_00130 0.84 -0.9
131,773 - -1.3
131,798 + +0.1
131,818 - -0.2
131,818 - +0.3
131,820 + -0.8
131,828 - -0.3
131,843 + -0.3
131,843 + +1.4
131,851 - -1.1
131,856 - -3.0
131,879 - -2.7
131,882 + +1.1
131,892 + -2.4
131,918 + -0.2
132,016 - MPMX20_00131 0.14 -0.1
132,086 - MPMX20_00131 0.18 +1.4
132,134 - MPMX20_00131 0.21 -0.4
132,148 + MPMX20_00131 0.22 +0.7
132,150 + MPMX20_00131 0.22 +0.5
132,158 - MPMX20_00131 0.23 -0.2
132,160 + MPMX20_00131 0.23 -0.8
132,168 - MPMX20_00131 0.23 -1.4
132,168 - MPMX20_00131 0.23 -1.6
132,188 + MPMX20_00131 0.24 +0.8
132,188 + MPMX20_00131 0.24 +0.1
132,188 + MPMX20_00131 0.24 +0.2
132,196 - MPMX20_00131 0.25 -1.6
132,221 + MPMX20_00131 0.26 -0.5
132,237 - MPMX20_00131 0.27 +0.4
132,237 - MPMX20_00131 0.27 -0.3
132,248 + MPMX20_00131 0.28 +2.4
132,248 + MPMX20_00131 0.28 -0.5
132,267 + MPMX20_00131 0.29 +0.4
132,267 + MPMX20_00131 0.29 +0.5
132,296 - MPMX20_00131 0.31 -0.4
132,310 + MPMX20_00131 0.32 +0.4
132,310 + MPMX20_00131 0.32 -1.4
132,350 - MPMX20_00131 0.34 -0.5
132,371 + MPMX20_00131 0.36 +0.5
132,428 + MPMX20_00131 0.39 +3.4
132,440 + MPMX20_00131 0.40 +3.4
132,448 - MPMX20_00131 0.40 +0.8
132,471 + MPMX20_00131 0.42 +0.2
132,472 - MPMX20_00131 0.42 +3.7
132,568 + MPMX20_00131 0.47 -3.2
132,583 - MPMX20_00131 0.48 -0.9
132,607 - MPMX20_00131 0.50 -1.0
132,649 + MPMX20_00131 0.52 +0.3
132,654 + MPMX20_00131 0.53 +0.4
132,657 - MPMX20_00131 0.53 -1.4
132,657 - MPMX20_00131 0.53 -1.6
132,727 + MPMX20_00131 0.57 -0.2
132,783 - MPMX20_00131 0.60 -1.3

Or see this region's nucleotide sequence