Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00127

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00125 and MPMX20_00126 are separated by 78 nucleotidesMPMX20_00126 and MPMX20_00127 overlap by 4 nucleotidesMPMX20_00127 and MPMX20_00128 are separated by 45 nucleotides MPMX20_00125: MPMX20_00125 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 125,871 to 126,890 _00125 MPMX20_00126: MPMX20_00126 - Serine acetyltransferase, at 126,969 to 127,790 _00126 MPMX20_00127: MPMX20_00127 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 127,787 to 128,260 _00127 MPMX20_00128: MPMX20_00128 - 4-hydroxybenzoate transporter PcaK, at 128,306 to 129,646 _00128 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 126.863 kb on + strandat 126.870 kb on + strandat 126.926 kb on + strandat 126.926 kb on + strandat 126.926 kb on + strandat 126.926 kb on + strandat 126.926 kb on + strandat 126.929 kb on - strandat 126.931 kb on + strandat 126.934 kb on - strandat 126.934 kb on - strandat 126.954 kb on + strandat 126.955 kb on + strandat 126.972 kb on - strandat 126.972 kb on - strandat 127.783 kb on + strandat 127.791 kb on - strandat 127.809 kb on + strandat 127.862 kb on - strand, within MPMX20_00127at 127.864 kb on + strand, within MPMX20_00127at 127.872 kb on - strand, within MPMX20_00127at 127.872 kb on - strand, within MPMX20_00127at 127.975 kb on - strand, within MPMX20_00127at 128.037 kb on - strand, within MPMX20_00127at 128.048 kb on - strand, within MPMX20_00127at 128.111 kb on + strand, within MPMX20_00127at 128.126 kb on + strand, within MPMX20_00127at 128.131 kb on + strand, within MPMX20_00127at 128.134 kb on - strand, within MPMX20_00127at 128.134 kb on - strand, within MPMX20_00127at 128.134 kb on - strand, within MPMX20_00127at 128.250 kb on + strandat 128.268 kb on + strandat 128.372 kb on - strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.383 kb on + strandat 128.391 kb on - strandat 128.391 kb on - strandat 128.391 kb on - strandat 128.391 kb on - strandat 128.391 kb on - strandat 128.391 kb on - strandat 128.391 kb on - strandat 128.391 kb on - strandat 128.409 kb on + strandat 128.424 kb on + strandat 128.424 kb on + strandat 128.426 kb on + strandat 128.449 kb on - strand, within MPMX20_00128at 128.449 kb on - strand, within MPMX20_00128at 128.510 kb on - strand, within MPMX20_00128at 128.515 kb on - strand, within MPMX20_00128at 128.518 kb on + strand, within MPMX20_00128at 128.525 kb on - strand, within MPMX20_00128at 128.526 kb on - strand, within MPMX20_00128at 128.534 kb on - strand, within MPMX20_00128at 128.612 kb on - strand, within MPMX20_00128at 128.617 kb on + strand, within MPMX20_00128at 128.648 kb on + strand, within MPMX20_00128at 128.648 kb on + strand, within MPMX20_00128at 128.653 kb on + strand, within MPMX20_00128at 128.653 kb on + strand, within MPMX20_00128at 128.656 kb on - strand, within MPMX20_00128at 128.661 kb on - strand, within MPMX20_00128at 128.661 kb on - strand, within MPMX20_00128at 128.661 kb on - strand, within MPMX20_00128at 128.695 kb on + strand, within MPMX20_00128at 128.699 kb on + strand, within MPMX20_00128at 128.774 kb on + strand, within MPMX20_00128at 128.782 kb on - strand, within MPMX20_00128at 128.782 kb on - strand, within MPMX20_00128at 128.783 kb on - strand, within MPMX20_00128at 128.788 kb on - strand, within MPMX20_00128at 128.808 kb on + strand, within MPMX20_00128at 128.816 kb on - strand, within MPMX20_00128at 128.816 kb on - strand, within MPMX20_00128at 128.868 kb on - strand, within MPMX20_00128at 128.904 kb on - strand, within MPMX20_00128at 128.956 kb on + strand, within MPMX20_00128at 128.968 kb on - strand, within MPMX20_00128at 129.011 kb on - strand, within MPMX20_00128at 129.070 kb on + strand, within MPMX20_00128at 129.078 kb on - strand, within MPMX20_00128at 129.085 kb on + strand, within MPMX20_00128at 129.085 kb on - strand, within MPMX20_00128at 129.103 kb on + strand, within MPMX20_00128at 129.106 kb on - strand, within MPMX20_00128at 129.109 kb on + strand, within MPMX20_00128at 129.111 kb on - strand, within MPMX20_00128at 129.111 kb on - strand, within MPMX20_00128at 129.111 kb on - strand, within MPMX20_00128at 129.127 kb on - strand, within MPMX20_00128at 129.138 kb on - strand, within MPMX20_00128at 129.143 kb on - strand, within MPMX20_00128at 129.239 kb on - strand, within MPMX20_00128

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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126,863 + -0.2
126,870 + -3.2
126,926 + -2.7
126,926 + -0.2
126,926 + -2.0
126,926 + -0.5
126,926 + -1.3
126,929 - -0.2
126,931 + -1.1
126,934 - +1.4
126,934 - +2.4
126,954 + -0.2
126,955 + -1.1
126,972 - +0.8
126,972 - +2.4
127,783 + -2.1
127,791 - -1.4
127,809 + -1.1
127,862 - MPMX20_00127 0.16 -2.0
127,864 + MPMX20_00127 0.16 +0.9
127,872 - MPMX20_00127 0.18 -1.1
127,872 - MPMX20_00127 0.18 -2.1
127,975 - MPMX20_00127 0.40 -2.2
128,037 - MPMX20_00127 0.53 -0.6
128,048 - MPMX20_00127 0.55 -1.1
128,111 + MPMX20_00127 0.68 -1.5
128,126 + MPMX20_00127 0.72 -2.6
128,131 + MPMX20_00127 0.73 -0.9
128,134 - MPMX20_00127 0.73 -1.9
128,134 - MPMX20_00127 0.73 +0.7
128,134 - MPMX20_00127 0.73 -0.6
128,250 + -1.0
128,268 + +3.7
128,372 - -0.6
128,383 + -0.1
128,383 + -0.1
128,383 + +0.2
128,383 + +0.3
128,383 + +0.4
128,383 + -0.4
128,383 + -2.2
128,383 + -3.6
128,383 + +0.1
128,383 + -2.1
128,383 + +1.4
128,391 - -0.8
128,391 - -0.1
128,391 - -2.0
128,391 - -1.9
128,391 - +0.5
128,391 - +1.1
128,391 - -1.1
128,391 - -0.4
128,409 + -2.2
128,424 + -0.0
128,424 + -1.9
128,426 + -1.1
128,449 - MPMX20_00128 0.11 +2.4
128,449 - MPMX20_00128 0.11 -1.9
128,510 - MPMX20_00128 0.15 +1.8
128,515 - MPMX20_00128 0.16 -0.8
128,518 + MPMX20_00128 0.16 -0.6
128,525 - MPMX20_00128 0.16 -1.7
128,526 - MPMX20_00128 0.16 -0.6
128,534 - MPMX20_00128 0.17 +1.8
128,612 - MPMX20_00128 0.23 +2.1
128,617 + MPMX20_00128 0.23 -1.7
128,648 + MPMX20_00128 0.26 +0.4
128,648 + MPMX20_00128 0.26 +1.5
128,653 + MPMX20_00128 0.26 +0.6
128,653 + MPMX20_00128 0.26 -0.8
128,656 - MPMX20_00128 0.26 -3.3
128,661 - MPMX20_00128 0.26 -2.0
128,661 - MPMX20_00128 0.26 +0.5
128,661 - MPMX20_00128 0.26 +1.6
128,695 + MPMX20_00128 0.29 -0.3
128,699 + MPMX20_00128 0.29 +2.1
128,774 + MPMX20_00128 0.35 +0.5
128,782 - MPMX20_00128 0.35 -2.3
128,782 - MPMX20_00128 0.35 -0.8
128,783 - MPMX20_00128 0.36 -2.1
128,788 - MPMX20_00128 0.36 -1.2
128,808 + MPMX20_00128 0.37 -1.9
128,816 - MPMX20_00128 0.38 -1.3
128,816 - MPMX20_00128 0.38 -0.7
128,868 - MPMX20_00128 0.42 -1.4
128,904 - MPMX20_00128 0.45 -2.2
128,956 + MPMX20_00128 0.48 +0.7
128,968 - MPMX20_00128 0.49 +2.4
129,011 - MPMX20_00128 0.53 -2.5
129,070 + MPMX20_00128 0.57 +2.7
129,078 - MPMX20_00128 0.58 -1.9
129,085 + MPMX20_00128 0.58 -0.2
129,085 - MPMX20_00128 0.58 +2.1
129,103 + MPMX20_00128 0.59 +0.4
129,106 - MPMX20_00128 0.60 -1.6
129,109 + MPMX20_00128 0.60 -3.1
129,111 - MPMX20_00128 0.60 -2.7
129,111 - MPMX20_00128 0.60 -0.9
129,111 - MPMX20_00128 0.60 -0.4
129,127 - MPMX20_00128 0.61 -3.1
129,138 - MPMX20_00128 0.62 +0.4
129,143 - MPMX20_00128 0.62 -0.3
129,239 - MPMX20_00128 0.70 +0.1

Or see this region's nucleotide sequence