Experiment: TSB plate, 1:1 coculture with Brevibacillus agri TBS_043
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04582 and MPMX20_04583 overlap by 4 nucleotides MPMX20_04583 and MPMX20_04584 overlap by 7 nucleotides MPMX20_04584 and MPMX20_04585 are separated by 122 nucleotides MPMX20_04585 and MPMX20_04586 are separated by 34 nucleotides
MPMX20_04582: MPMX20_04582 - D-aminoacyl-tRNA deacylase, at 4,794,240 to 4,794,677
_04582
MPMX20_04583: MPMX20_04583 - hypothetical protein, at 4,794,674 to 4,795,555
_04583
MPMX20_04584: MPMX20_04584 - Alpha-D-glucose 1-phosphate phosphatase YihX, at 4,795,549 to 4,796,148
_04584
MPMX20_04585: MPMX20_04585 - HTH-type transcriptional repressor CsqR, at 4,796,271 to 4,797,071
_04585
MPMX20_04586: MPMX20_04586 - Sulfofructose kinase, at 4,797,106 to 4,798,002
_04586
Position (kb)
4795
4796
4797 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4794.583 kb on + strand, within MPMX20_04582 at 4794.583 kb on + strand, within MPMX20_04582 at 4794.645 kb on + strand at 4794.662 kb on + strand at 4794.662 kb on + strand at 4794.779 kb on - strand, within MPMX20_04583 at 4794.825 kb on - strand, within MPMX20_04583 at 4794.828 kb on + strand, within MPMX20_04583 at 4794.828 kb on + strand, within MPMX20_04583 at 4794.836 kb on - strand, within MPMX20_04583 at 4794.836 kb on - strand, within MPMX20_04583 at 4794.846 kb on + strand, within MPMX20_04583 at 4794.918 kb on + strand, within MPMX20_04583 at 4794.955 kb on + strand, within MPMX20_04583 at 4794.958 kb on - strand, within MPMX20_04583 at 4794.960 kb on + strand, within MPMX20_04583 at 4794.963 kb on - strand, within MPMX20_04583 at 4794.963 kb on - strand, within MPMX20_04583 at 4794.963 kb on - strand, within MPMX20_04583 at 4794.963 kb on - strand, within MPMX20_04583 at 4794.963 kb on - strand, within MPMX20_04583 at 4794.963 kb on - strand, within MPMX20_04583 at 4794.971 kb on - strand, within MPMX20_04583 at 4795.011 kb on + strand, within MPMX20_04583 at 4795.111 kb on + strand, within MPMX20_04583 at 4795.111 kb on + strand, within MPMX20_04583 at 4795.111 kb on + strand, within MPMX20_04583 at 4795.119 kb on - strand, within MPMX20_04583 at 4795.119 kb on - strand, within MPMX20_04583 at 4795.119 kb on - strand, within MPMX20_04583 at 4795.132 kb on + strand, within MPMX20_04583 at 4795.147 kb on + strand, within MPMX20_04583 at 4795.147 kb on - strand, within MPMX20_04583 at 4795.200 kb on + strand, within MPMX20_04583 at 4795.279 kb on + strand, within MPMX20_04583 at 4795.284 kb on + strand, within MPMX20_04583 at 4795.292 kb on + strand, within MPMX20_04583 at 4795.292 kb on - strand, within MPMX20_04583 at 4795.292 kb on - strand, within MPMX20_04583 at 4795.416 kb on + strand, within MPMX20_04583 at 4795.424 kb on - strand, within MPMX20_04583 at 4795.442 kb on - strand, within MPMX20_04583 at 4795.458 kb on + strand, within MPMX20_04583 at 4795.461 kb on + strand, within MPMX20_04583 at 4795.466 kb on + strand, within MPMX20_04583 at 4795.471 kb on + strand at 4795.492 kb on - strand at 4795.506 kb on - strand at 4795.506 kb on - strand at 4795.517 kb on + strand at 4795.521 kb on - strand at 4795.581 kb on - strand at 4795.595 kb on - strand at 4795.623 kb on + strand, within MPMX20_04584 at 4795.657 kb on + strand, within MPMX20_04584 at 4795.724 kb on + strand, within MPMX20_04584 at 4795.766 kb on + strand, within MPMX20_04584 at 4795.779 kb on + strand, within MPMX20_04584 at 4795.791 kb on + strand, within MPMX20_04584 at 4795.836 kb on + strand, within MPMX20_04584 at 4795.884 kb on + strand, within MPMX20_04584 at 4795.884 kb on + strand, within MPMX20_04584 at 4795.910 kb on + strand, within MPMX20_04584 at 4796.013 kb on + strand, within MPMX20_04584 at 4796.013 kb on + strand, within MPMX20_04584 at 4796.021 kb on - strand, within MPMX20_04584 at 4796.028 kb on - strand, within MPMX20_04584 at 4796.067 kb on + strand, within MPMX20_04584 at 4796.201 kb on - strand at 4796.214 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.268 kb on + strand at 4796.276 kb on - strand at 4796.276 kb on - strand at 4796.319 kb on - strand at 4796.350 kb on + strand at 4796.350 kb on + strand at 4796.498 kb on - strand, within MPMX20_04585 at 4796.498 kb on - strand, within MPMX20_04585 at 4796.503 kb on - strand, within MPMX20_04585 at 4796.509 kb on - strand, within MPMX20_04585 at 4796.556 kb on - strand, within MPMX20_04585 at 4796.614 kb on - strand, within MPMX20_04585 at 4796.635 kb on - strand, within MPMX20_04585 at 4796.702 kb on - strand, within MPMX20_04585 at 4796.706 kb on + strand, within MPMX20_04585 at 4796.860 kb on - strand, within MPMX20_04585 at 4796.881 kb on + strand, within MPMX20_04585 at 4796.917 kb on - strand, within MPMX20_04585 at 4796.957 kb on + strand, within MPMX20_04585 at 4796.975 kb on - strand, within MPMX20_04585 at 4797.026 kb on + strand at 4797.064 kb on - strand at 4797.067 kb on + strand at 4797.069 kb on + strand at 4797.075 kb on - strand at 4797.133 kb on + strand at 4797.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Brevibacillus agri TBS_043 remove 4,794,583 + MPMX20_04582 0.78 +1.2 4,794,583 + MPMX20_04582 0.78 -0.2 4,794,645 + -0.6 4,794,662 + +0.0 4,794,662 + +0.9 4,794,779 - MPMX20_04583 0.12 -2.5 4,794,825 - MPMX20_04583 0.17 +0.3 4,794,828 + MPMX20_04583 0.17 +3.0 4,794,828 + MPMX20_04583 0.17 +0.0 4,794,836 - MPMX20_04583 0.18 +0.8 4,794,836 - MPMX20_04583 0.18 -1.7 4,794,846 + MPMX20_04583 0.20 -0.1 4,794,918 + MPMX20_04583 0.28 -1.8 4,794,955 + MPMX20_04583 0.32 +2.2 4,794,958 - MPMX20_04583 0.32 +0.6 4,794,960 + MPMX20_04583 0.32 -0.3 4,794,963 - MPMX20_04583 0.33 -1.3 4,794,963 - MPMX20_04583 0.33 +0.3 4,794,963 - MPMX20_04583 0.33 +0.6 4,794,963 - MPMX20_04583 0.33 -0.2 4,794,963 - MPMX20_04583 0.33 +1.4 4,794,963 - MPMX20_04583 0.33 -0.5 4,794,971 - MPMX20_04583 0.34 +1.8 4,795,011 + MPMX20_04583 0.38 -1.4 4,795,111 + MPMX20_04583 0.50 -0.0 4,795,111 + MPMX20_04583 0.50 +1.2 4,795,111 + MPMX20_04583 0.50 +0.8 4,795,119 - MPMX20_04583 0.50 -0.6 4,795,119 - MPMX20_04583 0.50 +0.2 4,795,119 - MPMX20_04583 0.50 -0.7 4,795,132 + MPMX20_04583 0.52 +1.0 4,795,147 + MPMX20_04583 0.54 -0.6 4,795,147 - MPMX20_04583 0.54 +1.6 4,795,200 + MPMX20_04583 0.60 -0.5 4,795,279 + MPMX20_04583 0.69 -1.6 4,795,284 + MPMX20_04583 0.69 +1.0 4,795,292 + MPMX20_04583 0.70 -0.7 4,795,292 - MPMX20_04583 0.70 +0.2 4,795,292 - MPMX20_04583 0.70 -0.6 4,795,416 + MPMX20_04583 0.84 -3.0 4,795,424 - MPMX20_04583 0.85 -0.2 4,795,442 - MPMX20_04583 0.87 +2.4 4,795,458 + MPMX20_04583 0.89 -0.3 4,795,461 + MPMX20_04583 0.89 -2.1 4,795,466 + MPMX20_04583 0.90 +1.0 4,795,471 + +0.7 4,795,492 - -1.1 4,795,506 - +4.4 4,795,506 - -0.6 4,795,517 + +0.7 4,795,521 - -0.6 4,795,581 - +0.4 4,795,595 - +1.4 4,795,623 + MPMX20_04584 0.12 -1.3 4,795,657 + MPMX20_04584 0.18 +1.1 4,795,724 + MPMX20_04584 0.29 -0.7 4,795,766 + MPMX20_04584 0.36 -1.4 4,795,779 + MPMX20_04584 0.38 +3.2 4,795,791 + MPMX20_04584 0.40 +3.2 4,795,836 + MPMX20_04584 0.48 +1.4 4,795,884 + MPMX20_04584 0.56 -1.3 4,795,884 + MPMX20_04584 0.56 +1.9 4,795,910 + MPMX20_04584 0.60 -0.6 4,796,013 + MPMX20_04584 0.77 +2.2 4,796,013 + MPMX20_04584 0.77 -0.4 4,796,021 - MPMX20_04584 0.79 +3.9 4,796,028 - MPMX20_04584 0.80 +1.0 4,796,067 + MPMX20_04584 0.86 -0.6 4,796,201 - +0.8 4,796,214 + +1.2 4,796,268 + +0.2 4,796,268 + -0.6 4,796,268 + -1.8 4,796,268 + -0.5 4,796,268 + -0.4 4,796,268 + +1.6 4,796,276 - -0.5 4,796,276 - +1.2 4,796,319 - -0.6 4,796,350 + -3.3 4,796,350 + +1.2 4,796,498 - MPMX20_04585 0.28 -1.2 4,796,498 - MPMX20_04585 0.28 +1.2 4,796,503 - MPMX20_04585 0.29 -1.5 4,796,509 - MPMX20_04585 0.30 -2.9 4,796,556 - MPMX20_04585 0.36 +1.2 4,796,614 - MPMX20_04585 0.43 -0.4 4,796,635 - MPMX20_04585 0.45 +0.2 4,796,702 - MPMX20_04585 0.54 -2.3 4,796,706 + MPMX20_04585 0.54 -1.9 4,796,860 - MPMX20_04585 0.74 -2.0 4,796,881 + MPMX20_04585 0.76 +1.2 4,796,917 - MPMX20_04585 0.81 +0.3 4,796,957 + MPMX20_04585 0.86 +0.2 4,796,975 - MPMX20_04585 0.88 -0.4 4,797,026 + -0.4 4,797,064 - +0.6 4,797,067 + +0.9 4,797,069 + +0.2 4,797,075 - -1.5 4,797,133 + +1.2 4,797,133 + +0.3
Or see this region's nucleotide sequence