Experiment: TSB plate, 1:1 coculture with Brevibacillus agri TBS_043
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04327 and MPMX20_04328 overlap by 4 nucleotides MPMX20_04328 and MPMX20_04329 are separated by 73 nucleotides MPMX20_04329 and MPMX20_04330 are separated by 227 nucleotides MPMX20_04330 and MPMX20_04331 are separated by 1 nucleotides
MPMX20_04327: MPMX20_04327 - Lactose transport system permease protein LacG, at 4,521,342 to 4,522,187
_04327
MPMX20_04328: MPMX20_04328 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 4,522,184 to 4,523,071
_04328
MPMX20_04329: MPMX20_04329 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 4,523,145 to 4,524,461
_04329
MPMX20_04330: MPMX20_04330 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 4,524,689 to 4,525,402
_04330
MPMX20_04331: MPMX20_04331 - Lipopolysaccharide export system ATP-binding protein LptB, at 4,525,404 to 4,526,171
_04331
Position (kb)
4523
4524
4525 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4522.166 kb on + strand at 4522.210 kb on - strand at 4522.230 kb on - strand at 4522.337 kb on + strand, within MPMX20_04328 at 4522.342 kb on + strand, within MPMX20_04328 at 4522.394 kb on + strand, within MPMX20_04328 at 4522.394 kb on + strand, within MPMX20_04328 at 4522.395 kb on + strand, within MPMX20_04328 at 4522.395 kb on + strand, within MPMX20_04328 at 4522.395 kb on + strand, within MPMX20_04328 at 4522.472 kb on + strand, within MPMX20_04328 at 4522.477 kb on + strand, within MPMX20_04328 at 4522.477 kb on + strand, within MPMX20_04328 at 4522.477 kb on + strand, within MPMX20_04328 at 4522.485 kb on - strand, within MPMX20_04328 at 4522.485 kb on - strand, within MPMX20_04328 at 4522.485 kb on - strand, within MPMX20_04328 at 4522.485 kb on - strand, within MPMX20_04328 at 4522.508 kb on - strand, within MPMX20_04328 at 4522.508 kb on - strand, within MPMX20_04328 at 4522.527 kb on - strand, within MPMX20_04328 at 4522.534 kb on + strand, within MPMX20_04328 at 4522.613 kb on + strand, within MPMX20_04328 at 4522.616 kb on - strand, within MPMX20_04328 at 4522.632 kb on - strand, within MPMX20_04328 at 4522.645 kb on - strand, within MPMX20_04328 at 4522.733 kb on - strand, within MPMX20_04328 at 4522.759 kb on - strand, within MPMX20_04328 at 4522.891 kb on + strand, within MPMX20_04328 at 4522.891 kb on + strand, within MPMX20_04328 at 4522.896 kb on + strand, within MPMX20_04328 at 4522.943 kb on + strand, within MPMX20_04328 at 4522.998 kb on + strand at 4523.064 kb on - strand at 4523.073 kb on - strand at 4523.074 kb on - strand at 4523.081 kb on - strand at 4523.089 kb on - strand at 4523.099 kb on + strand at 4523.101 kb on - strand at 4523.105 kb on - strand at 4523.195 kb on + strand at 4523.203 kb on - strand at 4523.205 kb on + strand at 4523.213 kb on - strand at 4523.224 kb on - strand at 4523.277 kb on - strand, within MPMX20_04329 at 4523.284 kb on + strand, within MPMX20_04329 at 4523.396 kb on + strand, within MPMX20_04329 at 4523.404 kb on - strand, within MPMX20_04329 at 4523.408 kb on - strand, within MPMX20_04329 at 4523.475 kb on + strand, within MPMX20_04329 at 4523.511 kb on + strand, within MPMX20_04329 at 4523.511 kb on + strand, within MPMX20_04329 at 4523.520 kb on - strand, within MPMX20_04329 at 4523.520 kb on - strand, within MPMX20_04329 at 4523.530 kb on - strand, within MPMX20_04329 at 4523.569 kb on + strand, within MPMX20_04329 at 4523.600 kb on - strand, within MPMX20_04329 at 4523.774 kb on + strand, within MPMX20_04329 at 4523.774 kb on + strand, within MPMX20_04329 at 4523.774 kb on + strand, within MPMX20_04329 at 4523.798 kb on - strand, within MPMX20_04329 at 4523.881 kb on - strand, within MPMX20_04329 at 4523.881 kb on - strand, within MPMX20_04329 at 4523.915 kb on - strand, within MPMX20_04329 at 4523.920 kb on + strand, within MPMX20_04329 at 4523.927 kb on + strand, within MPMX20_04329 at 4523.928 kb on - strand, within MPMX20_04329 at 4523.928 kb on - strand, within MPMX20_04329 at 4524.023 kb on - strand, within MPMX20_04329 at 4524.141 kb on - strand, within MPMX20_04329 at 4524.171 kb on - strand, within MPMX20_04329 at 4524.212 kb on + strand, within MPMX20_04329 at 4524.253 kb on + strand, within MPMX20_04329 at 4524.265 kb on - strand, within MPMX20_04329 at 4524.274 kb on + strand, within MPMX20_04329 at 4524.276 kb on - strand, within MPMX20_04329 at 4524.334 kb on - strand at 4524.343 kb on + strand at 4524.354 kb on + strand at 4524.375 kb on + strand at 4524.384 kb on + strand at 4524.422 kb on - strand at 4524.432 kb on + strand at 4524.432 kb on + strand at 4524.432 kb on + strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.478 kb on - strand at 4524.621 kb on + strand at 4524.621 kb on + strand at 4524.629 kb on - strand at 4524.629 kb on - strand at 4524.631 kb on + strand at 4524.633 kb on + strand at 4524.849 kb on + strand, within MPMX20_04330 at 4524.859 kb on + strand, within MPMX20_04330 at 4524.859 kb on + strand, within MPMX20_04330 at 4524.864 kb on - strand, within MPMX20_04330 at 4524.877 kb on - strand, within MPMX20_04330 at 4524.895 kb on + strand, within MPMX20_04330 at 4524.895 kb on + strand, within MPMX20_04330 at 4524.895 kb on + strand, within MPMX20_04330 at 4524.895 kb on + strand, within MPMX20_04330 at 4524.981 kb on + strand, within MPMX20_04330 at 4524.989 kb on - strand, within MPMX20_04330 at 4524.989 kb on - strand, within MPMX20_04330 at 4525.042 kb on - strand, within MPMX20_04330 at 4525.071 kb on - strand, within MPMX20_04330 at 4525.254 kb on + strand, within MPMX20_04330 at 4525.254 kb on + strand, within MPMX20_04330 at 4525.262 kb on - strand, within MPMX20_04330 at 4525.295 kb on - strand, within MPMX20_04330 at 4525.365 kb on + strand at 4525.373 kb on - strand at 4525.413 kb on + strand at 4525.418 kb on + strand at 4525.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Brevibacillus agri TBS_043 remove 4,522,166 + +0.1 4,522,210 - -1.7 4,522,230 - -0.0 4,522,337 + MPMX20_04328 0.17 -0.2 4,522,342 + MPMX20_04328 0.18 -0.5 4,522,394 + MPMX20_04328 0.24 +0.8 4,522,394 + MPMX20_04328 0.24 -0.1 4,522,395 + MPMX20_04328 0.24 +1.1 4,522,395 + MPMX20_04328 0.24 -0.8 4,522,395 + MPMX20_04328 0.24 -1.1 4,522,472 + MPMX20_04328 0.32 +0.9 4,522,477 + MPMX20_04328 0.33 +4.2 4,522,477 + MPMX20_04328 0.33 -1.1 4,522,477 + MPMX20_04328 0.33 -0.7 4,522,485 - MPMX20_04328 0.34 -1.1 4,522,485 - MPMX20_04328 0.34 -1.9 4,522,485 - MPMX20_04328 0.34 -2.8 4,522,485 - MPMX20_04328 0.34 -0.9 4,522,508 - MPMX20_04328 0.36 +2.2 4,522,508 - MPMX20_04328 0.36 +1.5 4,522,527 - MPMX20_04328 0.39 -0.4 4,522,534 + MPMX20_04328 0.39 -0.9 4,522,613 + MPMX20_04328 0.48 -1.8 4,522,616 - MPMX20_04328 0.49 +1.2 4,522,632 - MPMX20_04328 0.50 -0.1 4,522,645 - MPMX20_04328 0.52 -2.9 4,522,733 - MPMX20_04328 0.62 +0.2 4,522,759 - MPMX20_04328 0.65 -0.0 4,522,891 + MPMX20_04328 0.80 -1.4 4,522,891 + MPMX20_04328 0.80 -0.1 4,522,896 + MPMX20_04328 0.80 -2.5 4,522,943 + MPMX20_04328 0.85 +0.1 4,522,998 + +0.3 4,523,064 - -2.0 4,523,073 - -0.8 4,523,074 - -1.7 4,523,081 - +1.1 4,523,089 - +0.6 4,523,099 + -0.6 4,523,101 - -1.8 4,523,105 - +2.2 4,523,195 + -1.0 4,523,203 - +2.2 4,523,205 + +0.3 4,523,213 - -1.4 4,523,224 - -3.2 4,523,277 - MPMX20_04329 0.10 -0.4 4,523,284 + MPMX20_04329 0.11 -0.9 4,523,396 + MPMX20_04329 0.19 -0.7 4,523,404 - MPMX20_04329 0.20 +0.4 4,523,408 - MPMX20_04329 0.20 -0.4 4,523,475 + MPMX20_04329 0.25 -1.7 4,523,511 + MPMX20_04329 0.28 +5.7 4,523,511 + MPMX20_04329 0.28 +1.2 4,523,520 - MPMX20_04329 0.28 -2.7 4,523,520 - MPMX20_04329 0.28 +0.6 4,523,530 - MPMX20_04329 0.29 +1.6 4,523,569 + MPMX20_04329 0.32 -0.4 4,523,600 - MPMX20_04329 0.35 -0.6 4,523,774 + MPMX20_04329 0.48 -0.1 4,523,774 + MPMX20_04329 0.48 -0.1 4,523,774 + MPMX20_04329 0.48 +4.7 4,523,798 - MPMX20_04329 0.50 -0.8 4,523,881 - MPMX20_04329 0.56 +3.3 4,523,881 - MPMX20_04329 0.56 -1.3 4,523,915 - MPMX20_04329 0.58 -0.4 4,523,920 + MPMX20_04329 0.59 +0.3 4,523,927 + MPMX20_04329 0.59 +1.4 4,523,928 - MPMX20_04329 0.59 -0.6 4,523,928 - MPMX20_04329 0.59 +2.8 4,524,023 - MPMX20_04329 0.67 +1.0 4,524,141 - MPMX20_04329 0.76 -2.8 4,524,171 - MPMX20_04329 0.78 -1.7 4,524,212 + MPMX20_04329 0.81 +0.8 4,524,253 + MPMX20_04329 0.84 +0.1 4,524,265 - MPMX20_04329 0.85 +0.0 4,524,274 + MPMX20_04329 0.86 -0.6 4,524,276 - MPMX20_04329 0.86 -0.7 4,524,334 - -1.1 4,524,343 + -1.5 4,524,354 + +0.7 4,524,375 + +0.2 4,524,384 + -1.2 4,524,422 - +0.6 4,524,432 + +0.6 4,524,432 + +1.4 4,524,432 + +5.4 4,524,440 - +2.1 4,524,440 - +1.5 4,524,440 - -0.1 4,524,440 - +0.1 4,524,440 - -1.8 4,524,440 - +0.9 4,524,478 - -0.1 4,524,621 + -0.4 4,524,621 + -2.6 4,524,629 - +1.1 4,524,629 - -1.5 4,524,631 + +1.0 4,524,633 + +1.3 4,524,849 + MPMX20_04330 0.22 +0.9 4,524,859 + MPMX20_04330 0.24 -1.6 4,524,859 + MPMX20_04330 0.24 +0.2 4,524,864 - MPMX20_04330 0.25 +0.2 4,524,877 - MPMX20_04330 0.26 -0.7 4,524,895 + MPMX20_04330 0.29 +0.6 4,524,895 + MPMX20_04330 0.29 -2.2 4,524,895 + MPMX20_04330 0.29 +2.5 4,524,895 + MPMX20_04330 0.29 +0.2 4,524,981 + MPMX20_04330 0.41 -0.3 4,524,989 - MPMX20_04330 0.42 +1.2 4,524,989 - MPMX20_04330 0.42 -1.2 4,525,042 - MPMX20_04330 0.49 +1.8 4,525,071 - MPMX20_04330 0.54 -0.7 4,525,254 + MPMX20_04330 0.79 -1.5 4,525,254 + MPMX20_04330 0.79 -0.3 4,525,262 - MPMX20_04330 0.80 +1.2 4,525,295 - MPMX20_04330 0.85 -0.6 4,525,365 + -0.4 4,525,373 - +0.3 4,525,413 + +0.5 4,525,418 + +0.4 4,525,441 - -0.2
Or see this region's nucleotide sequence