Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00919

Experiment: TSB plate, 1:1 coculture with Brevibacillus agri TBS_043

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00917 and MPMX20_00918 are separated by 6 nucleotidesMPMX20_00918 and MPMX20_00919 are separated by 10 nucleotidesMPMX20_00919 and MPMX20_00920 overlap by 1 nucleotidesMPMX20_00920 and MPMX20_00921 are separated by 101 nucleotides MPMX20_00917: MPMX20_00917 - Na(+)-translocating NADH-quinone reductase subunit D, at 966,469 to 967,107 _00917 MPMX20_00918: MPMX20_00918 - Na(+)-translocating NADH-quinone reductase subunit E, at 967,114 to 967,710 _00918 MPMX20_00919: MPMX20_00919 - Na(+)-translocating NADH-quinone reductase subunit F, at 967,721 to 968,944 _00919 MPMX20_00920: MPMX20_00920 - hypothetical protein, at 968,944 to 969,147 _00920 MPMX20_00921: MPMX20_00921 - DNA polymerase IV, at 969,249 to 970,307 _00921 Position (kb) 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 966.910 kb on - strand, within MPMX20_00917at 966.910 kb on - strand, within MPMX20_00917at 966.910 kb on - strand, within MPMX20_00917at 966.972 kb on + strand, within MPMX20_00917at 966.978 kb on - strand, within MPMX20_00917at 966.978 kb on - strand, within MPMX20_00917at 966.982 kb on + strand, within MPMX20_00917at 967.067 kb on - strandat 967.082 kb on + strandat 967.090 kb on - strandat 967.090 kb on - strandat 967.090 kb on - strandat 967.141 kb on + strandat 967.234 kb on - strand, within MPMX20_00918at 967.295 kb on + strand, within MPMX20_00918at 967.296 kb on - strand, within MPMX20_00918at 967.320 kb on + strand, within MPMX20_00918at 967.320 kb on + strand, within MPMX20_00918at 967.320 kb on + strand, within MPMX20_00918at 967.391 kb on + strand, within MPMX20_00918at 967.392 kb on - strand, within MPMX20_00918at 967.428 kb on + strand, within MPMX20_00918at 967.628 kb on - strand, within MPMX20_00918at 967.637 kb on + strand, within MPMX20_00918at 967.637 kb on + strand, within MPMX20_00918at 967.637 kb on + strand, within MPMX20_00918at 967.645 kb on - strand, within MPMX20_00918at 967.656 kb on - strandat 967.704 kb on + strandat 967.712 kb on - strandat 967.746 kb on + strandat 967.778 kb on - strandat 967.926 kb on + strand, within MPMX20_00919at 967.949 kb on - strand, within MPMX20_00919at 967.975 kb on + strand, within MPMX20_00919at 968.027 kb on + strand, within MPMX20_00919at 968.032 kb on + strand, within MPMX20_00919at 968.039 kb on + strand, within MPMX20_00919at 968.171 kb on - strand, within MPMX20_00919at 968.208 kb on - strand, within MPMX20_00919at 968.258 kb on + strand, within MPMX20_00919at 968.278 kb on + strand, within MPMX20_00919at 968.286 kb on - strand, within MPMX20_00919at 968.372 kb on + strand, within MPMX20_00919at 968.372 kb on + strand, within MPMX20_00919at 968.372 kb on + strand, within MPMX20_00919at 968.422 kb on + strand, within MPMX20_00919at 968.504 kb on - strand, within MPMX20_00919at 968.602 kb on + strand, within MPMX20_00919at 968.646 kb on + strand, within MPMX20_00919at 968.778 kb on - strand, within MPMX20_00919at 968.861 kb on + strandat 968.861 kb on + strandat 969.019 kb on - strand, within MPMX20_00920at 969.029 kb on - strand, within MPMX20_00920at 969.041 kb on + strand, within MPMX20_00920at 969.044 kb on - strand, within MPMX20_00920at 969.044 kb on - strand, within MPMX20_00920at 969.086 kb on + strand, within MPMX20_00920at 969.086 kb on + strand, within MPMX20_00920at 969.088 kb on + strand, within MPMX20_00920at 969.094 kb on - strand, within MPMX20_00920at 969.147 kb on - strandat 969.156 kb on + strandat 969.169 kb on + strandat 969.177 kb on - strandat 969.182 kb on + strandat 969.240 kb on + strandat 969.302 kb on - strandat 969.357 kb on - strand, within MPMX20_00921at 969.357 kb on - strand, within MPMX20_00921at 969.357 kb on - strand, within MPMX20_00921at 969.362 kb on - strand, within MPMX20_00921at 969.376 kb on - strand, within MPMX20_00921at 969.380 kb on + strand, within MPMX20_00921at 969.380 kb on + strand, within MPMX20_00921at 969.388 kb on - strand, within MPMX20_00921at 969.388 kb on - strand, within MPMX20_00921at 969.388 kb on - strand, within MPMX20_00921at 969.388 kb on - strand, within MPMX20_00921at 969.388 kb on - strand, within MPMX20_00921at 969.407 kb on + strand, within MPMX20_00921at 969.420 kb on - strand, within MPMX20_00921at 969.424 kb on + strand, within MPMX20_00921at 969.440 kb on + strand, within MPMX20_00921at 969.526 kb on + strand, within MPMX20_00921at 969.534 kb on - strand, within MPMX20_00921at 969.554 kb on + strand, within MPMX20_00921at 969.562 kb on - strand, within MPMX20_00921at 969.565 kb on + strand, within MPMX20_00921at 969.582 kb on + strand, within MPMX20_00921at 969.585 kb on - strand, within MPMX20_00921at 969.587 kb on + strand, within MPMX20_00921at 969.609 kb on - strand, within MPMX20_00921at 969.636 kb on + strand, within MPMX20_00921at 969.703 kb on + strand, within MPMX20_00921at 969.731 kb on + strand, within MPMX20_00921at 969.734 kb on - strand, within MPMX20_00921at 969.750 kb on - strand, within MPMX20_00921at 969.750 kb on - strand, within MPMX20_00921at 969.753 kb on + strand, within MPMX20_00921at 969.761 kb on - strand, within MPMX20_00921at 969.889 kb on - strand, within MPMX20_00921at 969.931 kb on + strand, within MPMX20_00921at 969.939 kb on - strand, within MPMX20_00921

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Brevibacillus agri TBS_043
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966,910 - MPMX20_00917 0.69 -0.5
966,910 - MPMX20_00917 0.69 -0.2
966,910 - MPMX20_00917 0.69 -0.4
966,972 + MPMX20_00917 0.79 +0.4
966,978 - MPMX20_00917 0.80 +0.4
966,978 - MPMX20_00917 0.80 +0.3
966,982 + MPMX20_00917 0.80 +0.2
967,067 - +1.2
967,082 + -1.4
967,090 - -0.9
967,090 - -0.4
967,090 - +1.6
967,141 + -0.6
967,234 - MPMX20_00918 0.20 -0.0
967,295 + MPMX20_00918 0.30 +3.2
967,296 - MPMX20_00918 0.30 -1.4
967,320 + MPMX20_00918 0.35 +1.1
967,320 + MPMX20_00918 0.35 -0.4
967,320 + MPMX20_00918 0.35 -0.4
967,391 + MPMX20_00918 0.46 -2.4
967,392 - MPMX20_00918 0.47 -0.2
967,428 + MPMX20_00918 0.53 -1.0
967,628 - MPMX20_00918 0.86 -1.8
967,637 + MPMX20_00918 0.88 -0.6
967,637 + MPMX20_00918 0.88 +1.5
967,637 + MPMX20_00918 0.88 -1.3
967,645 - MPMX20_00918 0.89 +0.0
967,656 - +0.7
967,704 + -0.9
967,712 - -0.9
967,746 + -0.3
967,778 - -0.7
967,926 + MPMX20_00919 0.17 +1.2
967,949 - MPMX20_00919 0.19 -1.1
967,975 + MPMX20_00919 0.21 +0.2
968,027 + MPMX20_00919 0.25 +2.2
968,032 + MPMX20_00919 0.25 +2.3
968,039 + MPMX20_00919 0.26 +1.2
968,171 - MPMX20_00919 0.37 -0.4
968,208 - MPMX20_00919 0.40 -0.4
968,258 + MPMX20_00919 0.44 +1.9
968,278 + MPMX20_00919 0.46 +2.2
968,286 - MPMX20_00919 0.46 +1.1
968,372 + MPMX20_00919 0.53 +0.4
968,372 + MPMX20_00919 0.53 -1.6
968,372 + MPMX20_00919 0.53 +2.2
968,422 + MPMX20_00919 0.57 -0.7
968,504 - MPMX20_00919 0.64 +0.6
968,602 + MPMX20_00919 0.72 -1.3
968,646 + MPMX20_00919 0.76 -2.8
968,778 - MPMX20_00919 0.86 -0.3
968,861 + -0.1
968,861 + -0.5
969,019 - MPMX20_00920 0.37 +1.9
969,029 - MPMX20_00920 0.42 -2.5
969,041 + MPMX20_00920 0.48 -0.1
969,044 - MPMX20_00920 0.49 +0.0
969,044 - MPMX20_00920 0.49 -0.4
969,086 + MPMX20_00920 0.70 +0.1
969,086 + MPMX20_00920 0.70 -0.3
969,088 + MPMX20_00920 0.71 -0.1
969,094 - MPMX20_00920 0.74 -0.4
969,147 - -1.1
969,156 + -0.5
969,169 + +0.4
969,177 - +2.2
969,182 + +0.3
969,240 + +1.4
969,302 - +2.2
969,357 - MPMX20_00921 0.10 -2.7
969,357 - MPMX20_00921 0.10 -0.6
969,357 - MPMX20_00921 0.10 -2.6
969,362 - MPMX20_00921 0.11 -0.3
969,376 - MPMX20_00921 0.12 -0.9
969,380 + MPMX20_00921 0.12 -0.7
969,380 + MPMX20_00921 0.12 -1.1
969,388 - MPMX20_00921 0.13 -0.2
969,388 - MPMX20_00921 0.13 -1.5
969,388 - MPMX20_00921 0.13 -1.3
969,388 - MPMX20_00921 0.13 +0.2
969,388 - MPMX20_00921 0.13 -0.8
969,407 + MPMX20_00921 0.15 +0.0
969,420 - MPMX20_00921 0.16 -2.0
969,424 + MPMX20_00921 0.17 -1.9
969,440 + MPMX20_00921 0.18 -0.4
969,526 + MPMX20_00921 0.26 -1.4
969,534 - MPMX20_00921 0.27 -1.9
969,554 + MPMX20_00921 0.29 -2.3
969,562 - MPMX20_00921 0.30 +0.1
969,565 + MPMX20_00921 0.30 -1.0
969,582 + MPMX20_00921 0.31 +0.2
969,585 - MPMX20_00921 0.32 -0.9
969,587 + MPMX20_00921 0.32 -0.8
969,609 - MPMX20_00921 0.34 -0.7
969,636 + MPMX20_00921 0.37 +0.4
969,703 + MPMX20_00921 0.43 -0.5
969,731 + MPMX20_00921 0.46 +1.7
969,734 - MPMX20_00921 0.46 -0.2
969,750 - MPMX20_00921 0.47 +0.9
969,750 - MPMX20_00921 0.47 -1.5
969,753 + MPMX20_00921 0.48 +0.0
969,761 - MPMX20_00921 0.48 -0.3
969,889 - MPMX20_00921 0.60 -0.3
969,931 + MPMX20_00921 0.64 +0.6
969,939 - MPMX20_00921 0.65 +0.5

Or see this region's nucleotide sequence