Experiment: TSB plate, 1:1 coculture with Brevibacillus agri TBS_043
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00915 and MPMX20_00916 overlap by 8 nucleotides MPMX20_00916 and MPMX20_00917 overlap by 8 nucleotides MPMX20_00917 and MPMX20_00918 are separated by 6 nucleotides
MPMX20_00915: MPMX20_00915 - Na(+)-translocating NADH-quinone reductase subunit B, at 964,454 to 965,689
_00915
MPMX20_00916: MPMX20_00916 - Na(+)-translocating NADH-quinone reductase subunit C, at 965,682 to 966,476
_00916
MPMX20_00917: MPMX20_00917 - Na(+)-translocating NADH-quinone reductase subunit D, at 966,469 to 967,107
_00917
MPMX20_00918: MPMX20_00918 - Na(+)-translocating NADH-quinone reductase subunit E, at 967,114 to 967,710
_00918
Position (kb) 965
966
967 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 964.684 kb on - strand, within MPMX20_00915 at 964.697 kb on - strand, within MPMX20_00915 at 964.753 kb on - strand, within MPMX20_00915 at 964.753 kb on - strand, within MPMX20_00915 at 964.761 kb on - strand, within MPMX20_00915 at 964.763 kb on + strand, within MPMX20_00915 at 964.763 kb on + strand, within MPMX20_00915 at 964.811 kb on - strand, within MPMX20_00915 at 964.848 kb on + strand, within MPMX20_00915 at 964.878 kb on + strand, within MPMX20_00915 at 964.982 kb on - strand, within MPMX20_00915 at 965.143 kb on + strand, within MPMX20_00915 at 965.227 kb on - strand, within MPMX20_00915 at 965.356 kb on - strand, within MPMX20_00915 at 965.356 kb on - strand, within MPMX20_00915 at 965.373 kb on - strand, within MPMX20_00915 at 965.524 kb on - strand, within MPMX20_00915 at 965.555 kb on + strand, within MPMX20_00915 at 965.578 kb on + strand at 965.591 kb on + strand at 965.661 kb on + strand at 965.782 kb on + strand, within MPMX20_00916 at 965.805 kb on - strand, within MPMX20_00916 at 965.816 kb on + strand, within MPMX20_00916 at 965.872 kb on - strand, within MPMX20_00916 at 965.872 kb on - strand, within MPMX20_00916 at 965.875 kb on - strand, within MPMX20_00916 at 965.877 kb on - strand, within MPMX20_00916 at 965.881 kb on + strand, within MPMX20_00916 at 965.913 kb on + strand, within MPMX20_00916 at 965.997 kb on - strand, within MPMX20_00916 at 966.006 kb on + strand, within MPMX20_00916 at 966.054 kb on - strand, within MPMX20_00916 at 966.149 kb on - strand, within MPMX20_00916 at 966.149 kb on - strand, within MPMX20_00916 at 966.149 kb on - strand, within MPMX20_00916 at 966.156 kb on - strand, within MPMX20_00916 at 966.156 kb on - strand, within MPMX20_00916 at 966.187 kb on + strand, within MPMX20_00916 at 966.188 kb on - strand, within MPMX20_00916 at 966.196 kb on + strand, within MPMX20_00916 at 966.214 kb on + strand, within MPMX20_00916 at 966.226 kb on + strand, within MPMX20_00916 at 966.276 kb on + strand, within MPMX20_00916 at 966.309 kb on - strand, within MPMX20_00916 at 966.359 kb on + strand, within MPMX20_00916 at 966.385 kb on + strand, within MPMX20_00916 at 966.414 kb on + strand at 966.542 kb on - strand, within MPMX20_00917 at 966.542 kb on - strand, within MPMX20_00917 at 966.550 kb on - strand, within MPMX20_00917 at 966.557 kb on - strand, within MPMX20_00917 at 966.557 kb on - strand, within MPMX20_00917 at 966.603 kb on + strand, within MPMX20_00917 at 966.603 kb on + strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.627 kb on + strand, within MPMX20_00917 at 966.683 kb on + strand, within MPMX20_00917 at 966.910 kb on - strand, within MPMX20_00917 at 966.910 kb on - strand, within MPMX20_00917 at 966.910 kb on - strand, within MPMX20_00917 at 966.972 kb on + strand, within MPMX20_00917 at 966.978 kb on - strand, within MPMX20_00917 at 966.978 kb on - strand, within MPMX20_00917 at 966.982 kb on + strand, within MPMX20_00917 at 967.067 kb on - strand at 967.082 kb on + strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.141 kb on + strand at 967.234 kb on - strand, within MPMX20_00918 at 967.295 kb on + strand, within MPMX20_00918 at 967.296 kb on - strand, within MPMX20_00918 at 967.320 kb on + strand, within MPMX20_00918 at 967.320 kb on + strand, within MPMX20_00918 at 967.320 kb on + strand, within MPMX20_00918 at 967.391 kb on + strand, within MPMX20_00918 at 967.392 kb on - strand, within MPMX20_00918 at 967.428 kb on + strand, within MPMX20_00918
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Brevibacillus agri TBS_043 remove 964,684 - MPMX20_00915 0.19 +0.1 964,697 - MPMX20_00915 0.20 -0.6 964,753 - MPMX20_00915 0.24 -0.7 964,753 - MPMX20_00915 0.24 -0.7 964,761 - MPMX20_00915 0.25 -1.3 964,763 + MPMX20_00915 0.25 +0.1 964,763 + MPMX20_00915 0.25 -0.6 964,811 - MPMX20_00915 0.29 +1.2 964,848 + MPMX20_00915 0.32 +0.4 964,878 + MPMX20_00915 0.34 -1.1 964,982 - MPMX20_00915 0.43 +0.0 965,143 + MPMX20_00915 0.56 -1.0 965,227 - MPMX20_00915 0.63 +0.9 965,356 - MPMX20_00915 0.73 +3.4 965,356 - MPMX20_00915 0.73 +2.1 965,373 - MPMX20_00915 0.74 -1.5 965,524 - MPMX20_00915 0.87 -0.7 965,555 + MPMX20_00915 0.89 -2.6 965,578 + -2.5 965,591 + -0.5 965,661 + +0.4 965,782 + MPMX20_00916 0.13 -0.4 965,805 - MPMX20_00916 0.15 +0.3 965,816 + MPMX20_00916 0.17 -1.6 965,872 - MPMX20_00916 0.24 +2.5 965,872 - MPMX20_00916 0.24 +1.0 965,875 - MPMX20_00916 0.24 -2.0 965,877 - MPMX20_00916 0.25 -2.4 965,881 + MPMX20_00916 0.25 -1.9 965,913 + MPMX20_00916 0.29 +2.2 965,997 - MPMX20_00916 0.40 -2.4 966,006 + MPMX20_00916 0.41 -1.8 966,054 - MPMX20_00916 0.47 -1.1 966,149 - MPMX20_00916 0.59 -0.4 966,149 - MPMX20_00916 0.59 +0.6 966,149 - MPMX20_00916 0.59 -1.5 966,156 - MPMX20_00916 0.60 -1.7 966,156 - MPMX20_00916 0.60 -0.8 966,187 + MPMX20_00916 0.64 -1.4 966,188 - MPMX20_00916 0.64 +10.4 966,196 + MPMX20_00916 0.65 -0.9 966,214 + MPMX20_00916 0.67 +0.3 966,226 + MPMX20_00916 0.68 -1.2 966,276 + MPMX20_00916 0.75 -1.4 966,309 - MPMX20_00916 0.79 +0.0 966,359 + MPMX20_00916 0.85 +7.3 966,385 + MPMX20_00916 0.88 +1.2 966,414 + -1.3 966,542 - MPMX20_00917 0.11 -0.4 966,542 - MPMX20_00917 0.11 +0.4 966,550 - MPMX20_00917 0.13 -2.2 966,557 - MPMX20_00917 0.14 +0.2 966,557 - MPMX20_00917 0.14 -0.1 966,603 + MPMX20_00917 0.21 +0.8 966,603 + MPMX20_00917 0.21 -1.0 966,611 - MPMX20_00917 0.22 -0.6 966,611 - MPMX20_00917 0.22 -0.7 966,611 - MPMX20_00917 0.22 -1.5 966,611 - MPMX20_00917 0.22 +3.5 966,611 - MPMX20_00917 0.22 +0.3 966,627 + MPMX20_00917 0.25 +1.9 966,683 + MPMX20_00917 0.33 -0.4 966,910 - MPMX20_00917 0.69 -0.5 966,910 - MPMX20_00917 0.69 -0.2 966,910 - MPMX20_00917 0.69 -0.4 966,972 + MPMX20_00917 0.79 +0.4 966,978 - MPMX20_00917 0.80 +0.4 966,978 - MPMX20_00917 0.80 +0.3 966,982 + MPMX20_00917 0.80 +0.2 967,067 - +1.2 967,082 + -1.4 967,090 - -0.9 967,090 - -0.4 967,090 - +1.6 967,141 + -0.6 967,234 - MPMX20_00918 0.20 -0.0 967,295 + MPMX20_00918 0.30 +3.2 967,296 - MPMX20_00918 0.30 -1.4 967,320 + MPMX20_00918 0.35 +1.1 967,320 + MPMX20_00918 0.35 -0.4 967,320 + MPMX20_00918 0.35 -0.4 967,391 + MPMX20_00918 0.46 -2.4 967,392 - MPMX20_00918 0.47 -0.2 967,428 + MPMX20_00918 0.53 -1.0
Or see this region's nucleotide sequence