Experiment: M9 plate, 1:1 coculture with Brevibacillus agri TBS_043
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04474 and MPMX20_04475 are separated by 507 nucleotides MPMX20_04475 and MPMX20_04476 are separated by 44 nucleotides MPMX20_04476 and MPMX20_04477 are separated by 21 nucleotides MPMX20_04477 and MPMX20_04478 are separated by 67 nucleotides MPMX20_04478 and MPMX20_04479 are separated by 102 nucleotides
MPMX20_04474: MPMX20_04474 - hypothetical protein, at 4,679,870 to 4,681,081
_04474
MPMX20_04475: MPMX20_04475 - tRNA-Pro, at 4,681,589 to 4,681,665
_04475
MPMX20_04476: MPMX20_04476 - tRNA-Leu, at 4,681,710 to 4,681,796
_04476
MPMX20_04477: MPMX20_04477 - tRNA-His, at 4,681,818 to 4,681,893
_04477
MPMX20_04478: MPMX20_04478 - tRNA-Arg, at 4,681,961 to 4,682,037
_04478
MPMX20_04479: MPMX20_04479 - putative transport protein YifK, at 4,682,140 to 4,683,525
_04479
Position (kb)
4681
4682 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4680.690 kb on - strand, within MPMX20_04474 at 4680.698 kb on - strand, within MPMX20_04474 at 4680.831 kb on - strand, within MPMX20_04474 at 4680.845 kb on - strand, within MPMX20_04474 at 4680.850 kb on - strand, within MPMX20_04474 at 4680.914 kb on + strand, within MPMX20_04474 at 4680.942 kb on + strand, within MPMX20_04474 at 4680.995 kb on + strand at 4681.005 kb on + strand at 4681.038 kb on + strand at 4681.050 kb on - strand at 4681.057 kb on + strand at 4681.060 kb on + strand at 4681.065 kb on + strand at 4681.065 kb on - strand at 4681.165 kb on - strand at 4681.280 kb on - strand at 4681.283 kb on - strand at 4681.393 kb on - strand at 4681.502 kb on + strand at 4681.588 kb on - strand at 4681.676 kb on - strand at 4682.155 kb on + strand at 4682.322 kb on + strand, within MPMX20_04479 at 4682.322 kb on + strand, within MPMX20_04479 at 4682.330 kb on - strand, within MPMX20_04479 at 4682.330 kb on - strand, within MPMX20_04479 at 4682.353 kb on - strand, within MPMX20_04479 at 4682.468 kb on - strand, within MPMX20_04479 at 4682.483 kb on - strand, within MPMX20_04479 at 4682.587 kb on - strand, within MPMX20_04479 at 4682.604 kb on - strand, within MPMX20_04479 at 4682.611 kb on + strand, within MPMX20_04479 at 4682.632 kb on - strand, within MPMX20_04479
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Brevibacillus agri TBS_043 remove 4,680,690 - MPMX20_04474 0.68 -0.2 4,680,698 - MPMX20_04474 0.68 +0.3 4,680,831 - MPMX20_04474 0.79 +4.1 4,680,845 - MPMX20_04474 0.80 +1.7 4,680,850 - MPMX20_04474 0.81 -0.4 4,680,914 + MPMX20_04474 0.86 -1.0 4,680,942 + MPMX20_04474 0.88 +0.3 4,680,995 + -1.3 4,681,005 + +0.6 4,681,038 + -1.6 4,681,050 - +3.3 4,681,057 + +0.5 4,681,060 + -0.9 4,681,065 + -0.3 4,681,065 - +0.4 4,681,165 - -1.4 4,681,280 - +0.1 4,681,283 - +0.9 4,681,393 - -0.3 4,681,502 + +1.5 4,681,588 - -0.0 4,681,676 - +0.8 4,682,155 + +0.5 4,682,322 + MPMX20_04479 0.13 -1.1 4,682,322 + MPMX20_04479 0.13 +2.4 4,682,330 - MPMX20_04479 0.14 +1.4 4,682,330 - MPMX20_04479 0.14 -0.8 4,682,353 - MPMX20_04479 0.15 -0.0 4,682,468 - MPMX20_04479 0.24 -0.8 4,682,483 - MPMX20_04479 0.25 -1.2 4,682,587 - MPMX20_04479 0.32 +1.4 4,682,604 - MPMX20_04479 0.33 +0.6 4,682,611 + MPMX20_04479 0.34 -0.8 4,682,632 - MPMX20_04479 0.35 -3.1
Or see this region's nucleotide sequence