Experiment: M9 plate, 1:1 coculture with Brevibacillus agri TBS_043
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02378 and MPMX20_02379 are separated by 48 nucleotides MPMX20_02379 and MPMX20_02380 are separated by 221 nucleotides
MPMX20_02378: MPMX20_02378 - Formate dehydrogenase, nitrate-inducible, major subunit, at 2,506,134 to 2,508,545
_02378
MPMX20_02379: MPMX20_02379 - Formate dehydrogenase, nitrate-inducible, major subunit, at 2,508,594 to 2,509,181
_02379
MPMX20_02380: MPMX20_02380 - Aromatic amino acid exporter YddG, at 2,509,403 to 2,510,281
_02380
Position (kb)
2508
2509
2510 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2507.624 kb on - strand, within MPMX20_02378 at 2507.691 kb on + strand, within MPMX20_02378 at 2507.753 kb on - strand, within MPMX20_02378 at 2507.797 kb on + strand, within MPMX20_02378 at 2507.805 kb on - strand, within MPMX20_02378 at 2507.815 kb on - strand, within MPMX20_02378 at 2507.828 kb on + strand, within MPMX20_02378 at 2507.859 kb on - strand, within MPMX20_02378 at 2507.866 kb on - strand, within MPMX20_02378 at 2507.945 kb on - strand, within MPMX20_02378 at 2507.997 kb on + strand, within MPMX20_02378 at 2508.065 kb on + strand, within MPMX20_02378 at 2508.117 kb on + strand, within MPMX20_02378 at 2508.117 kb on + strand, within MPMX20_02378 at 2508.117 kb on + strand, within MPMX20_02378 at 2508.123 kb on + strand, within MPMX20_02378 at 2508.125 kb on - strand, within MPMX20_02378 at 2508.132 kb on - strand, within MPMX20_02378 at 2508.208 kb on + strand, within MPMX20_02378 at 2508.264 kb on + strand, within MPMX20_02378 at 2508.265 kb on + strand, within MPMX20_02378 at 2508.265 kb on + strand, within MPMX20_02378 at 2508.273 kb on - strand, within MPMX20_02378 at 2508.419 kb on + strand at 2508.500 kb on + strand at 2508.611 kb on - strand at 2508.634 kb on - strand at 2508.719 kb on + strand, within MPMX20_02379 at 2508.727 kb on - strand, within MPMX20_02379 at 2508.727 kb on - strand, within MPMX20_02379 at 2508.727 kb on - strand, within MPMX20_02379 at 2508.729 kb on - strand, within MPMX20_02379 at 2508.845 kb on + strand, within MPMX20_02379 at 2508.845 kb on + strand, within MPMX20_02379 at 2508.845 kb on + strand, within MPMX20_02379 at 2508.845 kb on + strand, within MPMX20_02379 at 2508.853 kb on - strand, within MPMX20_02379 at 2508.872 kb on - strand, within MPMX20_02379 at 2508.888 kb on - strand, within MPMX20_02379 at 2508.994 kb on + strand, within MPMX20_02379 at 2508.994 kb on - strand, within MPMX20_02379 at 2508.994 kb on - strand, within MPMX20_02379 at 2509.007 kb on + strand, within MPMX20_02379 at 2509.015 kb on - strand, within MPMX20_02379 at 2509.024 kb on - strand, within MPMX20_02379 at 2509.030 kb on + strand, within MPMX20_02379 at 2509.035 kb on + strand, within MPMX20_02379 at 2509.038 kb on - strand, within MPMX20_02379 at 2509.038 kb on - strand, within MPMX20_02379 at 2509.044 kb on + strand, within MPMX20_02379 at 2509.052 kb on - strand, within MPMX20_02379 at 2509.064 kb on + strand, within MPMX20_02379 at 2509.134 kb on - strand at 2509.224 kb on + strand at 2509.362 kb on - strand at 2509.400 kb on + strand at 2509.400 kb on + strand at 2509.419 kb on - strand at 2509.431 kb on - strand at 2509.453 kb on - strand at 2509.453 kb on - strand at 2509.461 kb on + strand at 2509.463 kb on - strand at 2509.479 kb on + strand at 2509.491 kb on + strand, within MPMX20_02380 at 2509.519 kb on + strand, within MPMX20_02380 at 2509.519 kb on + strand, within MPMX20_02380 at 2509.548 kb on - strand, within MPMX20_02380 at 2509.615 kb on + strand, within MPMX20_02380 at 2509.640 kb on + strand, within MPMX20_02380 at 2509.645 kb on + strand, within MPMX20_02380 at 2509.645 kb on + strand, within MPMX20_02380 at 2509.653 kb on - strand, within MPMX20_02380 at 2509.669 kb on + strand, within MPMX20_02380 at 2509.707 kb on + strand, within MPMX20_02380 at 2509.714 kb on + strand, within MPMX20_02380 at 2509.715 kb on - strand, within MPMX20_02380 at 2509.720 kb on - strand, within MPMX20_02380 at 2509.720 kb on - strand, within MPMX20_02380 at 2509.752 kb on + strand, within MPMX20_02380 at 2509.752 kb on + strand, within MPMX20_02380 at 2509.752 kb on + strand, within MPMX20_02380 at 2509.758 kb on + strand, within MPMX20_02380 at 2509.760 kb on - strand, within MPMX20_02380 at 2509.769 kb on + strand, within MPMX20_02380 at 2509.793 kb on - strand, within MPMX20_02380 at 2509.811 kb on - strand, within MPMX20_02380 at 2509.816 kb on - strand, within MPMX20_02380 at 2509.820 kb on + strand, within MPMX20_02380 at 2509.826 kb on + strand, within MPMX20_02380 at 2509.826 kb on + strand, within MPMX20_02380 at 2509.835 kb on - strand, within MPMX20_02380 at 2509.835 kb on - strand, within MPMX20_02380 at 2509.875 kb on + strand, within MPMX20_02380 at 2509.881 kb on - strand, within MPMX20_02380 at 2509.898 kb on + strand, within MPMX20_02380 at 2509.913 kb on + strand, within MPMX20_02380 at 2509.921 kb on - strand, within MPMX20_02380 at 2509.923 kb on - strand, within MPMX20_02380 at 2509.923 kb on - strand, within MPMX20_02380 at 2509.956 kb on + strand, within MPMX20_02380 at 2510.009 kb on - strand, within MPMX20_02380 at 2510.030 kb on + strand, within MPMX20_02380 at 2510.030 kb on + strand, within MPMX20_02380 at 2510.037 kb on + strand, within MPMX20_02380 at 2510.037 kb on + strand, within MPMX20_02380 at 2510.049 kb on + strand, within MPMX20_02380 at 2510.060 kb on + strand, within MPMX20_02380 at 2510.068 kb on - strand, within MPMX20_02380 at 2510.070 kb on + strand, within MPMX20_02380 at 2510.075 kb on + strand, within MPMX20_02380 at 2510.081 kb on + strand, within MPMX20_02380 at 2510.083 kb on - strand, within MPMX20_02380 at 2510.106 kb on + strand, within MPMX20_02380 at 2510.114 kb on + strand, within MPMX20_02380 at 2510.125 kb on + strand, within MPMX20_02380 at 2510.125 kb on + strand, within MPMX20_02380 at 2510.133 kb on - strand, within MPMX20_02380 at 2510.141 kb on + strand, within MPMX20_02380 at 2510.142 kb on - strand, within MPMX20_02380 at 2510.157 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.159 kb on + strand, within MPMX20_02380 at 2510.160 kb on - strand, within MPMX20_02380 at 2510.162 kb on + strand, within MPMX20_02380 at 2510.164 kb on + strand, within MPMX20_02380 at 2510.164 kb on + strand, within MPMX20_02380 at 2510.164 kb on + strand, within MPMX20_02380 at 2510.164 kb on + strand, within MPMX20_02380 at 2510.167 kb on - strand, within MPMX20_02380 at 2510.167 kb on - strand, within MPMX20_02380 at 2510.167 kb on - strand, within MPMX20_02380 at 2510.167 kb on - strand, within MPMX20_02380 at 2510.167 kb on - strand, within MPMX20_02380 at 2510.167 kb on - strand, within MPMX20_02380 at 2510.167 kb on - strand, within MPMX20_02380 at 2510.167 kb on - strand, within MPMX20_02380 at 2510.167 kb on - strand, within MPMX20_02380 at 2510.169 kb on + strand, within MPMX20_02380 at 2510.169 kb on + strand, within MPMX20_02380 at 2510.169 kb on + strand, within MPMX20_02380 at 2510.169 kb on + strand, within MPMX20_02380 at 2510.169 kb on + strand, within MPMX20_02380 at 2510.169 kb on + strand, within MPMX20_02380 at 2510.169 kb on + strand, within MPMX20_02380 at 2510.175 kb on - strand, within MPMX20_02380 at 2510.177 kb on - strand, within MPMX20_02380 at 2510.177 kb on - strand, within MPMX20_02380
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Brevibacillus agri TBS_043 remove 2,507,624 - MPMX20_02378 0.62 +0.0 2,507,691 + MPMX20_02378 0.65 -1.3 2,507,753 - MPMX20_02378 0.67 +1.0 2,507,797 + MPMX20_02378 0.69 -0.6 2,507,805 - MPMX20_02378 0.69 -0.7 2,507,815 - MPMX20_02378 0.70 +1.9 2,507,828 + MPMX20_02378 0.70 +0.0 2,507,859 - MPMX20_02378 0.72 +0.1 2,507,866 - MPMX20_02378 0.72 -0.6 2,507,945 - MPMX20_02378 0.75 +0.8 2,507,997 + MPMX20_02378 0.77 -0.3 2,508,065 + MPMX20_02378 0.80 -0.3 2,508,117 + MPMX20_02378 0.82 +0.2 2,508,117 + MPMX20_02378 0.82 -0.7 2,508,117 + MPMX20_02378 0.82 +0.9 2,508,123 + MPMX20_02378 0.82 +0.4 2,508,125 - MPMX20_02378 0.83 +0.0 2,508,132 - MPMX20_02378 0.83 +0.7 2,508,208 + MPMX20_02378 0.86 -1.8 2,508,264 + MPMX20_02378 0.88 +1.3 2,508,265 + MPMX20_02378 0.88 +1.6 2,508,265 + MPMX20_02378 0.88 -1.0 2,508,273 - MPMX20_02378 0.89 +0.3 2,508,419 + +1.0 2,508,500 + +1.1 2,508,611 - -1.0 2,508,634 - -0.9 2,508,719 + MPMX20_02379 0.21 -0.2 2,508,727 - MPMX20_02379 0.23 -0.1 2,508,727 - MPMX20_02379 0.23 -0.5 2,508,727 - MPMX20_02379 0.23 +1.1 2,508,729 - MPMX20_02379 0.23 +3.8 2,508,845 + MPMX20_02379 0.43 -1.0 2,508,845 + MPMX20_02379 0.43 +0.5 2,508,845 + MPMX20_02379 0.43 -0.5 2,508,845 + MPMX20_02379 0.43 -1.8 2,508,853 - MPMX20_02379 0.44 +2.4 2,508,872 - MPMX20_02379 0.47 -0.3 2,508,888 - MPMX20_02379 0.50 -1.3 2,508,994 + MPMX20_02379 0.68 +1.4 2,508,994 - MPMX20_02379 0.68 +1.6 2,508,994 - MPMX20_02379 0.68 +3.0 2,509,007 + MPMX20_02379 0.70 +0.9 2,509,015 - MPMX20_02379 0.72 +2.4 2,509,024 - MPMX20_02379 0.73 +0.0 2,509,030 + MPMX20_02379 0.74 +0.8 2,509,035 + MPMX20_02379 0.75 +2.4 2,509,038 - MPMX20_02379 0.76 -0.8 2,509,038 - MPMX20_02379 0.76 +0.8 2,509,044 + MPMX20_02379 0.77 -1.3 2,509,052 - MPMX20_02379 0.78 -1.2 2,509,064 + MPMX20_02379 0.80 +1.1 2,509,134 - -0.8 2,509,224 + -1.2 2,509,362 - -1.0 2,509,400 + -0.1 2,509,400 + +0.8 2,509,419 - +0.6 2,509,431 - -1.6 2,509,453 - +1.1 2,509,453 - +0.5 2,509,461 + +1.0 2,509,463 - +0.1 2,509,479 + -0.6 2,509,491 + MPMX20_02380 0.10 -1.3 2,509,519 + MPMX20_02380 0.13 -0.6 2,509,519 + MPMX20_02380 0.13 -0.4 2,509,548 - MPMX20_02380 0.16 +0.5 2,509,615 + MPMX20_02380 0.24 -1.3 2,509,640 + MPMX20_02380 0.27 -3.6 2,509,645 + MPMX20_02380 0.28 -1.0 2,509,645 + MPMX20_02380 0.28 -2.0 2,509,653 - MPMX20_02380 0.28 +0.2 2,509,669 + MPMX20_02380 0.30 -0.1 2,509,707 + MPMX20_02380 0.35 -0.9 2,509,714 + MPMX20_02380 0.35 -0.8 2,509,715 - MPMX20_02380 0.35 +0.2 2,509,720 - MPMX20_02380 0.36 -0.1 2,509,720 - MPMX20_02380 0.36 +0.0 2,509,752 + MPMX20_02380 0.40 +1.2 2,509,752 + MPMX20_02380 0.40 -0.5 2,509,752 + MPMX20_02380 0.40 -1.0 2,509,758 + MPMX20_02380 0.40 +1.3 2,509,760 - MPMX20_02380 0.41 +1.4 2,509,769 + MPMX20_02380 0.42 +3.1 2,509,793 - MPMX20_02380 0.44 -0.9 2,509,811 - MPMX20_02380 0.46 +1.4 2,509,816 - MPMX20_02380 0.47 +1.8 2,509,820 + MPMX20_02380 0.47 +2.4 2,509,826 + MPMX20_02380 0.48 +0.6 2,509,826 + MPMX20_02380 0.48 -2.0 2,509,835 - MPMX20_02380 0.49 -1.2 2,509,835 - MPMX20_02380 0.49 -0.9 2,509,875 + MPMX20_02380 0.54 +0.1 2,509,881 - MPMX20_02380 0.54 +2.7 2,509,898 + MPMX20_02380 0.56 -0.4 2,509,913 + MPMX20_02380 0.58 -0.8 2,509,921 - MPMX20_02380 0.59 +0.8 2,509,923 - MPMX20_02380 0.59 -0.4 2,509,923 - MPMX20_02380 0.59 +0.2 2,509,956 + MPMX20_02380 0.63 +0.8 2,510,009 - MPMX20_02380 0.69 -0.6 2,510,030 + MPMX20_02380 0.71 -0.2 2,510,030 + MPMX20_02380 0.71 +0.7 2,510,037 + MPMX20_02380 0.72 -0.2 2,510,037 + MPMX20_02380 0.72 -0.2 2,510,049 + MPMX20_02380 0.73 -0.2 2,510,060 + MPMX20_02380 0.75 +0.3 2,510,068 - MPMX20_02380 0.76 -0.2 2,510,070 + MPMX20_02380 0.76 -0.2 2,510,075 + MPMX20_02380 0.76 +1.3 2,510,081 + MPMX20_02380 0.77 +0.2 2,510,083 - MPMX20_02380 0.77 +0.8 2,510,106 + MPMX20_02380 0.80 -0.8 2,510,114 + MPMX20_02380 0.81 +0.4 2,510,125 + MPMX20_02380 0.82 +2.4 2,510,125 + MPMX20_02380 0.82 -3.3 2,510,133 - MPMX20_02380 0.83 -0.8 2,510,141 + MPMX20_02380 0.84 +1.8 2,510,142 - MPMX20_02380 0.84 +2.0 2,510,157 + MPMX20_02380 0.86 -2.5 2,510,159 + MPMX20_02380 0.86 +0.4 2,510,159 + MPMX20_02380 0.86 -0.3 2,510,159 + MPMX20_02380 0.86 -2.0 2,510,159 + MPMX20_02380 0.86 -1.4 2,510,159 + MPMX20_02380 0.86 +0.4 2,510,159 + MPMX20_02380 0.86 -0.1 2,510,159 + MPMX20_02380 0.86 -1.2 2,510,159 + MPMX20_02380 0.86 +0.9 2,510,159 + MPMX20_02380 0.86 +0.5 2,510,159 + MPMX20_02380 0.86 -0.6 2,510,159 + MPMX20_02380 0.86 +0.8 2,510,159 + MPMX20_02380 0.86 -1.6 2,510,159 + MPMX20_02380 0.86 -0.5 2,510,159 + MPMX20_02380 0.86 -0.2 2,510,159 + MPMX20_02380 0.86 -1.4 2,510,159 + MPMX20_02380 0.86 +0.4 2,510,159 + MPMX20_02380 0.86 -0.7 2,510,159 + MPMX20_02380 0.86 +0.1 2,510,159 + MPMX20_02380 0.86 +0.2 2,510,159 + MPMX20_02380 0.86 -1.4 2,510,159 + MPMX20_02380 0.86 +0.1 2,510,159 + MPMX20_02380 0.86 -2.2 2,510,159 + MPMX20_02380 0.86 +1.2 2,510,159 + MPMX20_02380 0.86 -0.2 2,510,159 + MPMX20_02380 0.86 -0.0 2,510,159 + MPMX20_02380 0.86 -1.1 2,510,160 - MPMX20_02380 0.86 -1.4 2,510,162 + MPMX20_02380 0.86 -2.3 2,510,164 + MPMX20_02380 0.87 -0.7 2,510,164 + MPMX20_02380 0.87 +0.2 2,510,164 + MPMX20_02380 0.87 -0.6 2,510,164 + MPMX20_02380 0.87 +1.0 2,510,167 - MPMX20_02380 0.87 -1.1 2,510,167 - MPMX20_02380 0.87 +0.2 2,510,167 - MPMX20_02380 0.87 +0.2 2,510,167 - MPMX20_02380 0.87 +0.7 2,510,167 - MPMX20_02380 0.87 -0.5 2,510,167 - MPMX20_02380 0.87 +0.1 2,510,167 - MPMX20_02380 0.87 -1.1 2,510,167 - MPMX20_02380 0.87 +0.6 2,510,167 - MPMX20_02380 0.87 -0.8 2,510,169 + MPMX20_02380 0.87 -1.0 2,510,169 + MPMX20_02380 0.87 -0.0 2,510,169 + MPMX20_02380 0.87 +0.0 2,510,169 + MPMX20_02380 0.87 -2.0 2,510,169 + MPMX20_02380 0.87 +0.5 2,510,169 + MPMX20_02380 0.87 +0.7 2,510,169 + MPMX20_02380 0.87 +0.3 2,510,175 - MPMX20_02380 0.88 -0.3 2,510,177 - MPMX20_02380 0.88 -2.9 2,510,177 - MPMX20_02380 0.88 -0.6
Or see this region's nucleotide sequence