Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01589

Experiment: M9 plate, 1:1 coculture with Brevibacillus agri TBS_043

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01588 and MPMX20_01589 are separated by 169 nucleotidesMPMX20_01589 and MPMX20_01590 are separated by 255 nucleotides MPMX20_01588: MPMX20_01588 - Asparagine--tRNA ligase, at 1,675,172 to 1,676,572 _01588 MPMX20_01589: MPMX20_01589 - Nicotinate phosphoribosyltransferase, at 1,676,742 to 1,677,944 _01589 MPMX20_01590: MPMX20_01590 - Aminopeptidase N, at 1,678,200 to 1,680,812 _01590 Position (kb) 1676 1677 1678Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1676.719 kb on + strandat 1676.727 kb on - strandat 1676.777 kb on - strandat 1676.801 kb on - strandat 1676.801 kb on - strandat 1676.886 kb on + strand, within MPMX20_01589at 1676.886 kb on + strand, within MPMX20_01589at 1676.894 kb on - strand, within MPMX20_01589at 1676.916 kb on + strand, within MPMX20_01589at 1676.916 kb on + strand, within MPMX20_01589at 1676.924 kb on - strand, within MPMX20_01589at 1676.924 kb on - strand, within MPMX20_01589at 1676.924 kb on - strand, within MPMX20_01589at 1676.945 kb on + strand, within MPMX20_01589at 1676.953 kb on - strand, within MPMX20_01589at 1677.007 kb on + strand, within MPMX20_01589at 1677.007 kb on + strand, within MPMX20_01589at 1677.169 kb on - strand, within MPMX20_01589at 1677.171 kb on + strand, within MPMX20_01589at 1677.181 kb on + strand, within MPMX20_01589at 1677.181 kb on + strand, within MPMX20_01589at 1677.224 kb on + strand, within MPMX20_01589at 1677.257 kb on - strand, within MPMX20_01589at 1677.311 kb on + strand, within MPMX20_01589at 1677.351 kb on + strand, within MPMX20_01589at 1677.375 kb on + strand, within MPMX20_01589at 1677.383 kb on - strand, within MPMX20_01589at 1677.383 kb on - strand, within MPMX20_01589at 1677.512 kb on + strand, within MPMX20_01589at 1677.517 kb on + strand, within MPMX20_01589at 1677.535 kb on + strand, within MPMX20_01589at 1677.561 kb on - strand, within MPMX20_01589at 1677.593 kb on - strand, within MPMX20_01589at 1677.597 kb on + strand, within MPMX20_01589at 1677.601 kb on - strand, within MPMX20_01589at 1677.700 kb on + strand, within MPMX20_01589at 1677.719 kb on - strand, within MPMX20_01589at 1677.761 kb on + strand, within MPMX20_01589at 1677.774 kb on - strand, within MPMX20_01589at 1677.774 kb on - strand, within MPMX20_01589at 1677.791 kb on - strand, within MPMX20_01589at 1677.793 kb on + strand, within MPMX20_01589at 1677.848 kb on + strandat 1677.887 kb on + strandat 1677.939 kb on + strandat 1677.939 kb on + strandat 1677.939 kb on + strandat 1677.963 kb on + strandat 1678.036 kb on + strandat 1678.044 kb on - strandat 1678.082 kb on + strandat 1678.085 kb on - strandat 1678.090 kb on - strandat 1678.206 kb on + strandat 1678.218 kb on + strandat 1678.240 kb on - strandat 1678.374 kb on - strandat 1678.397 kb on - strandat 1678.414 kb on - strandat 1678.414 kb on - strandat 1678.473 kb on - strand, within MPMX20_01590at 1678.473 kb on - strand, within MPMX20_01590at 1678.522 kb on + strand, within MPMX20_01590at 1678.522 kb on + strand, within MPMX20_01590at 1678.522 kb on + strand, within MPMX20_01590at 1678.536 kb on + strand, within MPMX20_01590at 1678.537 kb on + strand, within MPMX20_01590at 1678.556 kb on + strand, within MPMX20_01590at 1678.564 kb on - strand, within MPMX20_01590at 1678.564 kb on - strand, within MPMX20_01590at 1678.564 kb on - strand, within MPMX20_01590at 1678.564 kb on - strand, within MPMX20_01590at 1678.592 kb on - strand, within MPMX20_01590at 1678.600 kb on + strand, within MPMX20_01590at 1678.648 kb on + strand, within MPMX20_01590at 1678.686 kb on + strand, within MPMX20_01590at 1678.686 kb on + strand, within MPMX20_01590at 1678.720 kb on - strand, within MPMX20_01590at 1678.720 kb on - strand, within MPMX20_01590at 1678.902 kb on - strand, within MPMX20_01590

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Brevibacillus agri TBS_043
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1,676,719 + +0.7
1,676,727 - -2.7
1,676,777 - -1.3
1,676,801 - -1.4
1,676,801 - -1.1
1,676,886 + MPMX20_01589 0.12 +0.1
1,676,886 + MPMX20_01589 0.12 +1.0
1,676,894 - MPMX20_01589 0.13 +0.5
1,676,916 + MPMX20_01589 0.14 -0.7
1,676,916 + MPMX20_01589 0.14 -1.4
1,676,924 - MPMX20_01589 0.15 -0.6
1,676,924 - MPMX20_01589 0.15 -0.1
1,676,924 - MPMX20_01589 0.15 -1.6
1,676,945 + MPMX20_01589 0.17 -0.8
1,676,953 - MPMX20_01589 0.18 +0.7
1,677,007 + MPMX20_01589 0.22 +0.2
1,677,007 + MPMX20_01589 0.22 -1.2
1,677,169 - MPMX20_01589 0.35 -0.0
1,677,171 + MPMX20_01589 0.36 -0.5
1,677,181 + MPMX20_01589 0.36 +0.6
1,677,181 + MPMX20_01589 0.36 +0.5
1,677,224 + MPMX20_01589 0.40 -0.4
1,677,257 - MPMX20_01589 0.43 -0.3
1,677,311 + MPMX20_01589 0.47 +1.5
1,677,351 + MPMX20_01589 0.51 -0.4
1,677,375 + MPMX20_01589 0.53 -0.6
1,677,383 - MPMX20_01589 0.53 +0.7
1,677,383 - MPMX20_01589 0.53 -2.0
1,677,512 + MPMX20_01589 0.64 +0.7
1,677,517 + MPMX20_01589 0.64 +1.2
1,677,535 + MPMX20_01589 0.66 +1.2
1,677,561 - MPMX20_01589 0.68 -0.1
1,677,593 - MPMX20_01589 0.71 +1.4
1,677,597 + MPMX20_01589 0.71 +1.2
1,677,601 - MPMX20_01589 0.71 +0.7
1,677,700 + MPMX20_01589 0.80 -0.2
1,677,719 - MPMX20_01589 0.81 -0.0
1,677,761 + MPMX20_01589 0.85 -0.4
1,677,774 - MPMX20_01589 0.86 +3.6
1,677,774 - MPMX20_01589 0.86 -0.3
1,677,791 - MPMX20_01589 0.87 -0.0
1,677,793 + MPMX20_01589 0.87 +0.5
1,677,848 + +0.4
1,677,887 + -0.7
1,677,939 + -1.7
1,677,939 + -0.1
1,677,939 + -0.1
1,677,963 + -2.2
1,678,036 + +0.9
1,678,044 - -1.9
1,678,082 + -0.5
1,678,085 - +0.9
1,678,090 - -0.3
1,678,206 + -0.0
1,678,218 + -0.2
1,678,240 - -0.0
1,678,374 - -1.4
1,678,397 - -2.1
1,678,414 - -1.1
1,678,414 - -0.8
1,678,473 - MPMX20_01590 0.10 +1.0
1,678,473 - MPMX20_01590 0.10 -0.9
1,678,522 + MPMX20_01590 0.12 -2.3
1,678,522 + MPMX20_01590 0.12 +1.4
1,678,522 + MPMX20_01590 0.12 +0.2
1,678,536 + MPMX20_01590 0.13 -2.0
1,678,537 + MPMX20_01590 0.13 +1.7
1,678,556 + MPMX20_01590 0.14 +0.8
1,678,564 - MPMX20_01590 0.14 -2.1
1,678,564 - MPMX20_01590 0.14 -0.5
1,678,564 - MPMX20_01590 0.14 -0.5
1,678,564 - MPMX20_01590 0.14 -0.4
1,678,592 - MPMX20_01590 0.15 -1.0
1,678,600 + MPMX20_01590 0.15 +2.1
1,678,648 + MPMX20_01590 0.17 -1.2
1,678,686 + MPMX20_01590 0.19 +0.5
1,678,686 + MPMX20_01590 0.19 -0.3
1,678,720 - MPMX20_01590 0.20 +0.3
1,678,720 - MPMX20_01590 0.20 +0.1
1,678,902 - MPMX20_01590 0.27 +2.7

Or see this region's nucleotide sequence