Experiment: M9 plate, 1:1 coculture with Brevibacillus agri TBS_043
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01588 and MPMX20_01589 are separated by 169 nucleotides MPMX20_01589 and MPMX20_01590 are separated by 255 nucleotides
MPMX20_01588: MPMX20_01588 - Asparagine--tRNA ligase, at 1,675,172 to 1,676,572
_01588
MPMX20_01589: MPMX20_01589 - Nicotinate phosphoribosyltransferase, at 1,676,742 to 1,677,944
_01589
MPMX20_01590: MPMX20_01590 - Aminopeptidase N, at 1,678,200 to 1,680,812
_01590
Position (kb)
1676
1677
1678 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1676.719 kb on + strand at 1676.727 kb on - strand at 1676.777 kb on - strand at 1676.801 kb on - strand at 1676.801 kb on - strand at 1676.886 kb on + strand, within MPMX20_01589 at 1676.886 kb on + strand, within MPMX20_01589 at 1676.894 kb on - strand, within MPMX20_01589 at 1676.916 kb on + strand, within MPMX20_01589 at 1676.916 kb on + strand, within MPMX20_01589 at 1676.924 kb on - strand, within MPMX20_01589 at 1676.924 kb on - strand, within MPMX20_01589 at 1676.924 kb on - strand, within MPMX20_01589 at 1676.945 kb on + strand, within MPMX20_01589 at 1676.953 kb on - strand, within MPMX20_01589 at 1677.007 kb on + strand, within MPMX20_01589 at 1677.007 kb on + strand, within MPMX20_01589 at 1677.169 kb on - strand, within MPMX20_01589 at 1677.171 kb on + strand, within MPMX20_01589 at 1677.181 kb on + strand, within MPMX20_01589 at 1677.181 kb on + strand, within MPMX20_01589 at 1677.224 kb on + strand, within MPMX20_01589 at 1677.257 kb on - strand, within MPMX20_01589 at 1677.311 kb on + strand, within MPMX20_01589 at 1677.351 kb on + strand, within MPMX20_01589 at 1677.375 kb on + strand, within MPMX20_01589 at 1677.383 kb on - strand, within MPMX20_01589 at 1677.383 kb on - strand, within MPMX20_01589 at 1677.512 kb on + strand, within MPMX20_01589 at 1677.517 kb on + strand, within MPMX20_01589 at 1677.535 kb on + strand, within MPMX20_01589 at 1677.561 kb on - strand, within MPMX20_01589 at 1677.593 kb on - strand, within MPMX20_01589 at 1677.597 kb on + strand, within MPMX20_01589 at 1677.601 kb on - strand, within MPMX20_01589 at 1677.700 kb on + strand, within MPMX20_01589 at 1677.719 kb on - strand, within MPMX20_01589 at 1677.761 kb on + strand, within MPMX20_01589 at 1677.774 kb on - strand, within MPMX20_01589 at 1677.774 kb on - strand, within MPMX20_01589 at 1677.791 kb on - strand, within MPMX20_01589 at 1677.793 kb on + strand, within MPMX20_01589 at 1677.848 kb on + strand at 1677.887 kb on + strand at 1677.939 kb on + strand at 1677.939 kb on + strand at 1677.939 kb on + strand at 1677.963 kb on + strand at 1678.036 kb on + strand at 1678.044 kb on - strand at 1678.082 kb on + strand at 1678.085 kb on - strand at 1678.090 kb on - strand at 1678.206 kb on + strand at 1678.218 kb on + strand at 1678.240 kb on - strand at 1678.374 kb on - strand at 1678.397 kb on - strand at 1678.414 kb on - strand at 1678.414 kb on - strand at 1678.473 kb on - strand, within MPMX20_01590 at 1678.473 kb on - strand, within MPMX20_01590 at 1678.522 kb on + strand, within MPMX20_01590 at 1678.522 kb on + strand, within MPMX20_01590 at 1678.522 kb on + strand, within MPMX20_01590 at 1678.536 kb on + strand, within MPMX20_01590 at 1678.537 kb on + strand, within MPMX20_01590 at 1678.556 kb on + strand, within MPMX20_01590 at 1678.564 kb on - strand, within MPMX20_01590 at 1678.564 kb on - strand, within MPMX20_01590 at 1678.564 kb on - strand, within MPMX20_01590 at 1678.564 kb on - strand, within MPMX20_01590 at 1678.592 kb on - strand, within MPMX20_01590 at 1678.600 kb on + strand, within MPMX20_01590 at 1678.648 kb on + strand, within MPMX20_01590 at 1678.686 kb on + strand, within MPMX20_01590 at 1678.686 kb on + strand, within MPMX20_01590 at 1678.720 kb on - strand, within MPMX20_01590 at 1678.720 kb on - strand, within MPMX20_01590 at 1678.902 kb on - strand, within MPMX20_01590
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Brevibacillus agri TBS_043 remove 1,676,719 + +0.7 1,676,727 - -2.7 1,676,777 - -1.3 1,676,801 - -1.4 1,676,801 - -1.1 1,676,886 + MPMX20_01589 0.12 +0.1 1,676,886 + MPMX20_01589 0.12 +1.0 1,676,894 - MPMX20_01589 0.13 +0.5 1,676,916 + MPMX20_01589 0.14 -0.7 1,676,916 + MPMX20_01589 0.14 -1.4 1,676,924 - MPMX20_01589 0.15 -0.6 1,676,924 - MPMX20_01589 0.15 -0.1 1,676,924 - MPMX20_01589 0.15 -1.6 1,676,945 + MPMX20_01589 0.17 -0.8 1,676,953 - MPMX20_01589 0.18 +0.7 1,677,007 + MPMX20_01589 0.22 +0.2 1,677,007 + MPMX20_01589 0.22 -1.2 1,677,169 - MPMX20_01589 0.35 -0.0 1,677,171 + MPMX20_01589 0.36 -0.5 1,677,181 + MPMX20_01589 0.36 +0.6 1,677,181 + MPMX20_01589 0.36 +0.5 1,677,224 + MPMX20_01589 0.40 -0.4 1,677,257 - MPMX20_01589 0.43 -0.3 1,677,311 + MPMX20_01589 0.47 +1.5 1,677,351 + MPMX20_01589 0.51 -0.4 1,677,375 + MPMX20_01589 0.53 -0.6 1,677,383 - MPMX20_01589 0.53 +0.7 1,677,383 - MPMX20_01589 0.53 -2.0 1,677,512 + MPMX20_01589 0.64 +0.7 1,677,517 + MPMX20_01589 0.64 +1.2 1,677,535 + MPMX20_01589 0.66 +1.2 1,677,561 - MPMX20_01589 0.68 -0.1 1,677,593 - MPMX20_01589 0.71 +1.4 1,677,597 + MPMX20_01589 0.71 +1.2 1,677,601 - MPMX20_01589 0.71 +0.7 1,677,700 + MPMX20_01589 0.80 -0.2 1,677,719 - MPMX20_01589 0.81 -0.0 1,677,761 + MPMX20_01589 0.85 -0.4 1,677,774 - MPMX20_01589 0.86 +3.6 1,677,774 - MPMX20_01589 0.86 -0.3 1,677,791 - MPMX20_01589 0.87 -0.0 1,677,793 + MPMX20_01589 0.87 +0.5 1,677,848 + +0.4 1,677,887 + -0.7 1,677,939 + -1.7 1,677,939 + -0.1 1,677,939 + -0.1 1,677,963 + -2.2 1,678,036 + +0.9 1,678,044 - -1.9 1,678,082 + -0.5 1,678,085 - +0.9 1,678,090 - -0.3 1,678,206 + -0.0 1,678,218 + -0.2 1,678,240 - -0.0 1,678,374 - -1.4 1,678,397 - -2.1 1,678,414 - -1.1 1,678,414 - -0.8 1,678,473 - MPMX20_01590 0.10 +1.0 1,678,473 - MPMX20_01590 0.10 -0.9 1,678,522 + MPMX20_01590 0.12 -2.3 1,678,522 + MPMX20_01590 0.12 +1.4 1,678,522 + MPMX20_01590 0.12 +0.2 1,678,536 + MPMX20_01590 0.13 -2.0 1,678,537 + MPMX20_01590 0.13 +1.7 1,678,556 + MPMX20_01590 0.14 +0.8 1,678,564 - MPMX20_01590 0.14 -2.1 1,678,564 - MPMX20_01590 0.14 -0.5 1,678,564 - MPMX20_01590 0.14 -0.5 1,678,564 - MPMX20_01590 0.14 -0.4 1,678,592 - MPMX20_01590 0.15 -1.0 1,678,600 + MPMX20_01590 0.15 +2.1 1,678,648 + MPMX20_01590 0.17 -1.2 1,678,686 + MPMX20_01590 0.19 +0.5 1,678,686 + MPMX20_01590 0.19 -0.3 1,678,720 - MPMX20_01590 0.20 +0.3 1,678,720 - MPMX20_01590 0.20 +0.1 1,678,902 - MPMX20_01590 0.27 +2.7
Or see this region's nucleotide sequence