Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04587 and MPMX20_04588 are separated by 17 nucleotides MPMX20_04588 and MPMX20_04589 are separated by 14 nucleotides MPMX20_04589 and MPMX20_04590 are separated by 16 nucleotides
MPMX20_04587: MPMX20_04587 - 3-sulfolactaldehyde reductase, at 4,798,158 to 4,799,048
_04587
MPMX20_04588: MPMX20_04588 - Sulfofructosephosphate aldolase, at 4,799,066 to 4,799,941
_04588
MPMX20_04589: MPMX20_04589 - Sulfoquinovose isomerase, at 4,799,956 to 4,801,197
_04589
MPMX20_04590: MPMX20_04590 - Sulfoquinovosidase, at 4,801,214 to 4,803,238
_04590
Position (kb)
4799
4800
4801
4802 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4798.958 kb on - strand, within MPMX20_04587 at 4799.010 kb on - strand at 4799.064 kb on - strand at 4799.079 kb on + strand at 4799.109 kb on + strand at 4799.124 kb on + strand at 4799.132 kb on - strand at 4799.213 kb on - strand, within MPMX20_04588 at 4799.286 kb on + strand, within MPMX20_04588 at 4799.340 kb on + strand, within MPMX20_04588 at 4799.371 kb on - strand, within MPMX20_04588 at 4799.371 kb on - strand, within MPMX20_04588 at 4799.535 kb on - strand, within MPMX20_04588 at 4799.575 kb on + strand, within MPMX20_04588 at 4799.604 kb on + strand, within MPMX20_04588 at 4799.628 kb on + strand, within MPMX20_04588 at 4799.628 kb on + strand, within MPMX20_04588 at 4799.641 kb on - strand, within MPMX20_04588 at 4799.643 kb on + strand, within MPMX20_04588 at 4799.761 kb on - strand, within MPMX20_04588 at 4799.864 kb on + strand at 4799.971 kb on + strand at 4799.990 kb on + strand at 4800.050 kb on + strand at 4800.058 kb on - strand at 4800.124 kb on - strand, within MPMX20_04589 at 4800.129 kb on + strand, within MPMX20_04589 at 4800.209 kb on - strand, within MPMX20_04589 at 4800.272 kb on + strand, within MPMX20_04589 at 4800.272 kb on + strand, within MPMX20_04589 at 4800.277 kb on + strand, within MPMX20_04589 at 4800.280 kb on - strand, within MPMX20_04589 at 4800.289 kb on - strand, within MPMX20_04589 at 4800.409 kb on - strand, within MPMX20_04589 at 4800.414 kb on - strand, within MPMX20_04589 at 4800.430 kb on + strand, within MPMX20_04589 at 4800.487 kb on + strand, within MPMX20_04589 at 4800.495 kb on - strand, within MPMX20_04589 at 4800.495 kb on - strand, within MPMX20_04589 at 4800.495 kb on - strand, within MPMX20_04589 at 4800.557 kb on - strand, within MPMX20_04589 at 4800.624 kb on + strand, within MPMX20_04589 at 4800.624 kb on + strand, within MPMX20_04589 at 4800.630 kb on - strand, within MPMX20_04589 at 4800.632 kb on - strand, within MPMX20_04589 at 4800.632 kb on - strand, within MPMX20_04589 at 4800.900 kb on - strand, within MPMX20_04589 at 4800.910 kb on + strand, within MPMX20_04589 at 4800.936 kb on + strand, within MPMX20_04589 at 4800.936 kb on + strand, within MPMX20_04589 at 4800.936 kb on - strand, within MPMX20_04589 at 4800.963 kb on + strand, within MPMX20_04589 at 4801.082 kb on - strand at 4801.110 kb on + strand at 4801.147 kb on + strand at 4801.147 kb on + strand at 4801.210 kb on + strand at 4801.220 kb on + strand at 4801.238 kb on + strand at 4801.257 kb on + strand at 4801.262 kb on + strand at 4801.265 kb on - strand at 4801.291 kb on + strand at 4801.299 kb on - strand at 4801.331 kb on + strand at 4801.334 kb on - strand at 4801.339 kb on - strand at 4801.478 kb on - strand, within MPMX20_04590 at 4801.480 kb on + strand, within MPMX20_04590 at 4801.483 kb on + strand, within MPMX20_04590 at 4801.488 kb on - strand, within MPMX20_04590 at 4801.581 kb on - strand, within MPMX20_04590 at 4801.614 kb on + strand, within MPMX20_04590 at 4801.635 kb on - strand, within MPMX20_04590 at 4801.681 kb on + strand, within MPMX20_04590 at 4801.693 kb on - strand, within MPMX20_04590 at 4801.732 kb on + strand, within MPMX20_04590 at 4801.884 kb on - strand, within MPMX20_04590 at 4801.968 kb on + strand, within MPMX20_04590 at 4801.968 kb on + strand, within MPMX20_04590 at 4801.968 kb on + strand, within MPMX20_04590 at 4801.968 kb on + strand, within MPMX20_04590 at 4801.968 kb on + strand, within MPMX20_04590 at 4801.968 kb on + strand, within MPMX20_04590 at 4801.968 kb on + strand, within MPMX20_04590 at 4801.976 kb on - strand, within MPMX20_04590 at 4801.976 kb on - strand, within MPMX20_04590 at 4801.976 kb on - strand, within MPMX20_04590 at 4801.987 kb on + strand, within MPMX20_04590 at 4801.992 kb on + strand, within MPMX20_04590 at 4802.000 kb on - strand, within MPMX20_04590 at 4802.006 kb on - strand, within MPMX20_04590 at 4802.022 kb on - strand, within MPMX20_04590 at 4802.065 kb on + strand, within MPMX20_04590 at 4802.078 kb on - strand, within MPMX20_04590 at 4802.149 kb on + strand, within MPMX20_04590 at 4802.157 kb on - strand, within MPMX20_04590
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 4,798,958 - MPMX20_04587 0.90 -0.5 4,799,010 - -0.5 4,799,064 - +0.4 4,799,079 + -0.2 4,799,109 + -1.8 4,799,124 + -0.3 4,799,132 - -0.8 4,799,213 - MPMX20_04588 0.17 -0.6 4,799,286 + MPMX20_04588 0.25 +0.2 4,799,340 + MPMX20_04588 0.31 -1.4 4,799,371 - MPMX20_04588 0.35 -1.1 4,799,371 - MPMX20_04588 0.35 -0.8 4,799,535 - MPMX20_04588 0.54 -1.1 4,799,575 + MPMX20_04588 0.58 +1.4 4,799,604 + MPMX20_04588 0.61 +1.4 4,799,628 + MPMX20_04588 0.64 +0.2 4,799,628 + MPMX20_04588 0.64 +1.4 4,799,641 - MPMX20_04588 0.66 -1.7 4,799,643 + MPMX20_04588 0.66 +0.4 4,799,761 - MPMX20_04588 0.79 -0.6 4,799,864 + -2.0 4,799,971 + -2.0 4,799,990 + -1.5 4,800,050 + +0.1 4,800,058 - -0.8 4,800,124 - MPMX20_04589 0.14 -0.8 4,800,129 + MPMX20_04589 0.14 +0.8 4,800,209 - MPMX20_04589 0.20 +0.3 4,800,272 + MPMX20_04589 0.25 -0.3 4,800,272 + MPMX20_04589 0.25 +0.2 4,800,277 + MPMX20_04589 0.26 +0.1 4,800,280 - MPMX20_04589 0.26 +0.6 4,800,289 - MPMX20_04589 0.27 -0.2 4,800,409 - MPMX20_04589 0.36 -1.8 4,800,414 - MPMX20_04589 0.37 +0.9 4,800,430 + MPMX20_04589 0.38 -0.2 4,800,487 + MPMX20_04589 0.43 -1.0 4,800,495 - MPMX20_04589 0.43 +2.4 4,800,495 - MPMX20_04589 0.43 +0.4 4,800,495 - MPMX20_04589 0.43 -0.6 4,800,557 - MPMX20_04589 0.48 -0.3 4,800,624 + MPMX20_04589 0.54 +0.5 4,800,624 + MPMX20_04589 0.54 +2.6 4,800,630 - MPMX20_04589 0.54 +1.5 4,800,632 - MPMX20_04589 0.54 +0.9 4,800,632 - MPMX20_04589 0.54 +2.3 4,800,900 - MPMX20_04589 0.76 +0.7 4,800,910 + MPMX20_04589 0.77 -1.0 4,800,936 + MPMX20_04589 0.79 -0.1 4,800,936 + MPMX20_04589 0.79 +0.4 4,800,936 - MPMX20_04589 0.79 -1.1 4,800,963 + MPMX20_04589 0.81 +4.2 4,801,082 - -2.6 4,801,110 + +0.4 4,801,147 + +1.4 4,801,147 + +0.2 4,801,210 + +0.4 4,801,220 + +0.9 4,801,238 + +0.3 4,801,257 + -1.4 4,801,262 + +0.6 4,801,265 - +1.0 4,801,291 + -0.5 4,801,299 - +1.2 4,801,331 + +0.9 4,801,334 - -0.5 4,801,339 - +0.5 4,801,478 - MPMX20_04590 0.13 +3.4 4,801,480 + MPMX20_04590 0.13 -2.3 4,801,483 + MPMX20_04590 0.13 -0.4 4,801,488 - MPMX20_04590 0.14 +1.7 4,801,581 - MPMX20_04590 0.18 -0.2 4,801,614 + MPMX20_04590 0.20 +0.1 4,801,635 - MPMX20_04590 0.21 +0.2 4,801,681 + MPMX20_04590 0.23 +0.4 4,801,693 - MPMX20_04590 0.24 -0.4 4,801,732 + MPMX20_04590 0.26 -0.6 4,801,884 - MPMX20_04590 0.33 -0.3 4,801,968 + MPMX20_04590 0.37 +0.6 4,801,968 + MPMX20_04590 0.37 +0.6 4,801,968 + MPMX20_04590 0.37 +0.2 4,801,968 + MPMX20_04590 0.37 -1.7 4,801,968 + MPMX20_04590 0.37 +1.4 4,801,968 + MPMX20_04590 0.37 -2.0 4,801,968 + MPMX20_04590 0.37 -0.8 4,801,976 - MPMX20_04590 0.38 -3.1 4,801,976 - MPMX20_04590 0.38 -0.5 4,801,976 - MPMX20_04590 0.38 -0.4 4,801,987 + MPMX20_04590 0.38 -0.1 4,801,992 + MPMX20_04590 0.38 -0.7 4,802,000 - MPMX20_04590 0.39 +2.4 4,802,006 - MPMX20_04590 0.39 -1.7 4,802,022 - MPMX20_04590 0.40 +0.5 4,802,065 + MPMX20_04590 0.42 +0.2 4,802,078 - MPMX20_04590 0.43 -0.2 4,802,149 + MPMX20_04590 0.46 +0.8 4,802,157 - MPMX20_04590 0.47 +0.4
Or see this region's nucleotide sequence