Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04589

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04587 and MPMX20_04588 are separated by 17 nucleotidesMPMX20_04588 and MPMX20_04589 are separated by 14 nucleotidesMPMX20_04589 and MPMX20_04590 are separated by 16 nucleotides MPMX20_04587: MPMX20_04587 - 3-sulfolactaldehyde reductase, at 4,798,158 to 4,799,048 _04587 MPMX20_04588: MPMX20_04588 - Sulfofructosephosphate aldolase, at 4,799,066 to 4,799,941 _04588 MPMX20_04589: MPMX20_04589 - Sulfoquinovose isomerase, at 4,799,956 to 4,801,197 _04589 MPMX20_04590: MPMX20_04590 - Sulfoquinovosidase, at 4,801,214 to 4,803,238 _04590 Position (kb) 4799 4800 4801 4802Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4798.958 kb on - strand, within MPMX20_04587at 4799.010 kb on - strandat 4799.064 kb on - strandat 4799.079 kb on + strandat 4799.109 kb on + strandat 4799.124 kb on + strandat 4799.132 kb on - strandat 4799.213 kb on - strand, within MPMX20_04588at 4799.286 kb on + strand, within MPMX20_04588at 4799.340 kb on + strand, within MPMX20_04588at 4799.371 kb on - strand, within MPMX20_04588at 4799.371 kb on - strand, within MPMX20_04588at 4799.535 kb on - strand, within MPMX20_04588at 4799.575 kb on + strand, within MPMX20_04588at 4799.604 kb on + strand, within MPMX20_04588at 4799.628 kb on + strand, within MPMX20_04588at 4799.628 kb on + strand, within MPMX20_04588at 4799.641 kb on - strand, within MPMX20_04588at 4799.643 kb on + strand, within MPMX20_04588at 4799.761 kb on - strand, within MPMX20_04588at 4799.864 kb on + strandat 4799.971 kb on + strandat 4799.990 kb on + strandat 4800.050 kb on + strandat 4800.058 kb on - strandat 4800.124 kb on - strand, within MPMX20_04589at 4800.129 kb on + strand, within MPMX20_04589at 4800.209 kb on - strand, within MPMX20_04589at 4800.272 kb on + strand, within MPMX20_04589at 4800.272 kb on + strand, within MPMX20_04589at 4800.277 kb on + strand, within MPMX20_04589at 4800.280 kb on - strand, within MPMX20_04589at 4800.289 kb on - strand, within MPMX20_04589at 4800.409 kb on - strand, within MPMX20_04589at 4800.414 kb on - strand, within MPMX20_04589at 4800.430 kb on + strand, within MPMX20_04589at 4800.487 kb on + strand, within MPMX20_04589at 4800.495 kb on - strand, within MPMX20_04589at 4800.495 kb on - strand, within MPMX20_04589at 4800.495 kb on - strand, within MPMX20_04589at 4800.557 kb on - strand, within MPMX20_04589at 4800.624 kb on + strand, within MPMX20_04589at 4800.624 kb on + strand, within MPMX20_04589at 4800.630 kb on - strand, within MPMX20_04589at 4800.632 kb on - strand, within MPMX20_04589at 4800.632 kb on - strand, within MPMX20_04589at 4800.900 kb on - strand, within MPMX20_04589at 4800.910 kb on + strand, within MPMX20_04589at 4800.936 kb on + strand, within MPMX20_04589at 4800.936 kb on + strand, within MPMX20_04589at 4800.936 kb on - strand, within MPMX20_04589at 4800.963 kb on + strand, within MPMX20_04589at 4801.082 kb on - strandat 4801.110 kb on + strandat 4801.147 kb on + strandat 4801.147 kb on + strandat 4801.210 kb on + strandat 4801.220 kb on + strandat 4801.238 kb on + strandat 4801.257 kb on + strandat 4801.262 kb on + strandat 4801.265 kb on - strandat 4801.291 kb on + strandat 4801.299 kb on - strandat 4801.331 kb on + strandat 4801.334 kb on - strandat 4801.339 kb on - strandat 4801.478 kb on - strand, within MPMX20_04590at 4801.480 kb on + strand, within MPMX20_04590at 4801.483 kb on + strand, within MPMX20_04590at 4801.488 kb on - strand, within MPMX20_04590at 4801.581 kb on - strand, within MPMX20_04590at 4801.614 kb on + strand, within MPMX20_04590at 4801.635 kb on - strand, within MPMX20_04590at 4801.681 kb on + strand, within MPMX20_04590at 4801.693 kb on - strand, within MPMX20_04590at 4801.732 kb on + strand, within MPMX20_04590at 4801.884 kb on - strand, within MPMX20_04590at 4801.968 kb on + strand, within MPMX20_04590at 4801.968 kb on + strand, within MPMX20_04590at 4801.968 kb on + strand, within MPMX20_04590at 4801.968 kb on + strand, within MPMX20_04590at 4801.968 kb on + strand, within MPMX20_04590at 4801.968 kb on + strand, within MPMX20_04590at 4801.968 kb on + strand, within MPMX20_04590at 4801.976 kb on - strand, within MPMX20_04590at 4801.976 kb on - strand, within MPMX20_04590at 4801.976 kb on - strand, within MPMX20_04590at 4801.987 kb on + strand, within MPMX20_04590at 4801.992 kb on + strand, within MPMX20_04590at 4802.000 kb on - strand, within MPMX20_04590at 4802.006 kb on - strand, within MPMX20_04590at 4802.022 kb on - strand, within MPMX20_04590at 4802.065 kb on + strand, within MPMX20_04590at 4802.078 kb on - strand, within MPMX20_04590at 4802.149 kb on + strand, within MPMX20_04590at 4802.157 kb on - strand, within MPMX20_04590

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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4,798,958 - MPMX20_04587 0.90 -0.5
4,799,010 - -0.5
4,799,064 - +0.4
4,799,079 + -0.2
4,799,109 + -1.8
4,799,124 + -0.3
4,799,132 - -0.8
4,799,213 - MPMX20_04588 0.17 -0.6
4,799,286 + MPMX20_04588 0.25 +0.2
4,799,340 + MPMX20_04588 0.31 -1.4
4,799,371 - MPMX20_04588 0.35 -1.1
4,799,371 - MPMX20_04588 0.35 -0.8
4,799,535 - MPMX20_04588 0.54 -1.1
4,799,575 + MPMX20_04588 0.58 +1.4
4,799,604 + MPMX20_04588 0.61 +1.4
4,799,628 + MPMX20_04588 0.64 +0.2
4,799,628 + MPMX20_04588 0.64 +1.4
4,799,641 - MPMX20_04588 0.66 -1.7
4,799,643 + MPMX20_04588 0.66 +0.4
4,799,761 - MPMX20_04588 0.79 -0.6
4,799,864 + -2.0
4,799,971 + -2.0
4,799,990 + -1.5
4,800,050 + +0.1
4,800,058 - -0.8
4,800,124 - MPMX20_04589 0.14 -0.8
4,800,129 + MPMX20_04589 0.14 +0.8
4,800,209 - MPMX20_04589 0.20 +0.3
4,800,272 + MPMX20_04589 0.25 -0.3
4,800,272 + MPMX20_04589 0.25 +0.2
4,800,277 + MPMX20_04589 0.26 +0.1
4,800,280 - MPMX20_04589 0.26 +0.6
4,800,289 - MPMX20_04589 0.27 -0.2
4,800,409 - MPMX20_04589 0.36 -1.8
4,800,414 - MPMX20_04589 0.37 +0.9
4,800,430 + MPMX20_04589 0.38 -0.2
4,800,487 + MPMX20_04589 0.43 -1.0
4,800,495 - MPMX20_04589 0.43 +2.4
4,800,495 - MPMX20_04589 0.43 +0.4
4,800,495 - MPMX20_04589 0.43 -0.6
4,800,557 - MPMX20_04589 0.48 -0.3
4,800,624 + MPMX20_04589 0.54 +0.5
4,800,624 + MPMX20_04589 0.54 +2.6
4,800,630 - MPMX20_04589 0.54 +1.5
4,800,632 - MPMX20_04589 0.54 +0.9
4,800,632 - MPMX20_04589 0.54 +2.3
4,800,900 - MPMX20_04589 0.76 +0.7
4,800,910 + MPMX20_04589 0.77 -1.0
4,800,936 + MPMX20_04589 0.79 -0.1
4,800,936 + MPMX20_04589 0.79 +0.4
4,800,936 - MPMX20_04589 0.79 -1.1
4,800,963 + MPMX20_04589 0.81 +4.2
4,801,082 - -2.6
4,801,110 + +0.4
4,801,147 + +1.4
4,801,147 + +0.2
4,801,210 + +0.4
4,801,220 + +0.9
4,801,238 + +0.3
4,801,257 + -1.4
4,801,262 + +0.6
4,801,265 - +1.0
4,801,291 + -0.5
4,801,299 - +1.2
4,801,331 + +0.9
4,801,334 - -0.5
4,801,339 - +0.5
4,801,478 - MPMX20_04590 0.13 +3.4
4,801,480 + MPMX20_04590 0.13 -2.3
4,801,483 + MPMX20_04590 0.13 -0.4
4,801,488 - MPMX20_04590 0.14 +1.7
4,801,581 - MPMX20_04590 0.18 -0.2
4,801,614 + MPMX20_04590 0.20 +0.1
4,801,635 - MPMX20_04590 0.21 +0.2
4,801,681 + MPMX20_04590 0.23 +0.4
4,801,693 - MPMX20_04590 0.24 -0.4
4,801,732 + MPMX20_04590 0.26 -0.6
4,801,884 - MPMX20_04590 0.33 -0.3
4,801,968 + MPMX20_04590 0.37 +0.6
4,801,968 + MPMX20_04590 0.37 +0.6
4,801,968 + MPMX20_04590 0.37 +0.2
4,801,968 + MPMX20_04590 0.37 -1.7
4,801,968 + MPMX20_04590 0.37 +1.4
4,801,968 + MPMX20_04590 0.37 -2.0
4,801,968 + MPMX20_04590 0.37 -0.8
4,801,976 - MPMX20_04590 0.38 -3.1
4,801,976 - MPMX20_04590 0.38 -0.5
4,801,976 - MPMX20_04590 0.38 -0.4
4,801,987 + MPMX20_04590 0.38 -0.1
4,801,992 + MPMX20_04590 0.38 -0.7
4,802,000 - MPMX20_04590 0.39 +2.4
4,802,006 - MPMX20_04590 0.39 -1.7
4,802,022 - MPMX20_04590 0.40 +0.5
4,802,065 + MPMX20_04590 0.42 +0.2
4,802,078 - MPMX20_04590 0.43 -0.2
4,802,149 + MPMX20_04590 0.46 +0.8
4,802,157 - MPMX20_04590 0.47 +0.4

Or see this region's nucleotide sequence