Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04458 and MPMX20_04459 are separated by 27 nucleotides MPMX20_04459 and MPMX20_04460 are separated by 161 nucleotides MPMX20_04460 and MPMX20_04461 are separated by 51 nucleotides
MPMX20_04458: MPMX20_04458 - ATP-dependent DNA helicase RecQ, at 4,660,872 to 4,662,764
_04458
MPMX20_04459: MPMX20_04459 - Phospholipase A1, at 4,662,792 to 4,663,661
_04459
MPMX20_04460: MPMX20_04460 - hypothetical protein, at 4,663,823 to 4,664,290
_04460
MPMX20_04461: MPMX20_04461 - Protein RarD, at 4,664,342 to 4,665,238
_04461
Position (kb)
4662
4663
4664 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 4661.944 kb on + strand, within MPMX20_04458 at 4661.958 kb on - strand, within MPMX20_04458 at 4662.002 kb on + strand, within MPMX20_04458 at 4662.002 kb on + strand, within MPMX20_04458 at 4662.083 kb on - strand, within MPMX20_04458 at 4662.267 kb on - strand, within MPMX20_04458 at 4662.347 kb on - strand, within MPMX20_04458 at 4662.367 kb on - strand, within MPMX20_04458 at 4662.376 kb on + strand, within MPMX20_04458 at 4662.384 kb on - strand, within MPMX20_04458 at 4662.436 kb on - strand, within MPMX20_04458 at 4662.512 kb on + strand, within MPMX20_04458 at 4662.535 kb on - strand, within MPMX20_04458 at 4662.535 kb on - strand, within MPMX20_04458 at 4662.609 kb on + strand at 4662.609 kb on + strand at 4662.619 kb on + strand at 4662.627 kb on - strand at 4662.701 kb on + strand at 4662.709 kb on - strand at 4662.816 kb on + strand at 4662.821 kb on + strand at 4662.821 kb on + strand at 4662.824 kb on - strand at 4662.824 kb on - strand at 4662.829 kb on - strand at 4662.829 kb on - strand at 4662.829 kb on - strand at 4662.829 kb on - strand at 4662.863 kb on + strand at 4662.882 kb on - strand, within MPMX20_04459 at 4662.894 kb on - strand, within MPMX20_04459 at 4662.929 kb on + strand, within MPMX20_04459 at 4662.947 kb on - strand, within MPMX20_04459 at 4662.960 kb on + strand, within MPMX20_04459 at 4662.960 kb on + strand, within MPMX20_04459 at 4662.988 kb on + strand, within MPMX20_04459 at 4663.003 kb on - strand, within MPMX20_04459 at 4663.006 kb on + strand, within MPMX20_04459 at 4663.024 kb on + strand, within MPMX20_04459 at 4663.024 kb on + strand, within MPMX20_04459 at 4663.024 kb on - strand, within MPMX20_04459 at 4663.024 kb on - strand, within MPMX20_04459 at 4663.058 kb on - strand, within MPMX20_04459 at 4663.075 kb on - strand, within MPMX20_04459 at 4663.075 kb on - strand, within MPMX20_04459 at 4663.118 kb on + strand, within MPMX20_04459 at 4663.141 kb on - strand, within MPMX20_04459 at 4663.153 kb on + strand, within MPMX20_04459 at 4663.161 kb on - strand, within MPMX20_04459 at 4663.189 kb on + strand, within MPMX20_04459 at 4663.198 kb on - strand, within MPMX20_04459 at 4663.198 kb on - strand, within MPMX20_04459 at 4663.198 kb on - strand, within MPMX20_04459 at 4663.248 kb on + strand, within MPMX20_04459 at 4663.384 kb on + strand, within MPMX20_04459 at 4663.438 kb on - strand, within MPMX20_04459 at 4663.549 kb on + strand, within MPMX20_04459 at 4663.552 kb on - strand, within MPMX20_04459 at 4663.562 kb on - strand, within MPMX20_04459 at 4663.602 kb on + strand at 4663.610 kb on - strand at 4663.612 kb on + strand at 4663.612 kb on + strand at 4663.617 kb on + strand at 4663.620 kb on - strand at 4663.644 kb on + strand at 4663.644 kb on + strand at 4663.644 kb on + strand at 4663.644 kb on + strand at 4663.647 kb on - strand at 4663.647 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.652 kb on - strand at 4663.667 kb on + strand at 4663.667 kb on + strand at 4663.667 kb on - strand at 4663.682 kb on + strand at 4663.891 kb on + strand, within MPMX20_04460 at 4663.897 kb on - strand, within MPMX20_04460 at 4663.943 kb on - strand, within MPMX20_04460 at 4663.980 kb on + strand, within MPMX20_04460 at 4663.988 kb on - strand, within MPMX20_04460 at 4664.016 kb on + strand, within MPMX20_04460 at 4664.047 kb on - strand, within MPMX20_04460 at 4664.147 kb on - strand, within MPMX20_04460 at 4664.192 kb on - strand, within MPMX20_04460 at 4664.208 kb on + strand, within MPMX20_04460 at 4664.238 kb on + strand, within MPMX20_04460 at 4664.243 kb on + strand, within MPMX20_04460 at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.248 kb on + strand at 4664.256 kb on - strand at 4664.256 kb on - strand at 4664.256 kb on - strand at 4664.275 kb on - strand at 4664.282 kb on - strand at 4664.365 kb on + strand at 4664.380 kb on - strand at 4664.380 kb on - strand at 4664.387 kb on - strand at 4664.455 kb on - strand, within MPMX20_04461 at 4664.503 kb on - strand, within MPMX20_04461 at 4664.511 kb on + strand, within MPMX20_04461 at 4664.513 kb on - strand, within MPMX20_04461 at 4664.556 kb on + strand, within MPMX20_04461 at 4664.572 kb on + strand, within MPMX20_04461 at 4664.584 kb on + strand, within MPMX20_04461 at 4664.614 kb on - strand, within MPMX20_04461 at 4664.614 kb on - strand, within MPMX20_04461 at 4664.638 kb on + strand, within MPMX20_04461 at 4664.643 kb on + strand, within MPMX20_04461 at 4664.643 kb on + strand, within MPMX20_04461
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 4,661,944 + MPMX20_04458 0.57 -0.9 4,661,958 - MPMX20_04458 0.57 -1.2 4,662,002 + MPMX20_04458 0.60 -0.2 4,662,002 + MPMX20_04458 0.60 -0.2 4,662,083 - MPMX20_04458 0.64 -2.5 4,662,267 - MPMX20_04458 0.74 +3.4 4,662,347 - MPMX20_04458 0.78 +0.2 4,662,367 - MPMX20_04458 0.79 -0.2 4,662,376 + MPMX20_04458 0.79 +0.3 4,662,384 - MPMX20_04458 0.80 -0.3 4,662,436 - MPMX20_04458 0.83 -2.1 4,662,512 + MPMX20_04458 0.87 -1.6 4,662,535 - MPMX20_04458 0.88 +0.1 4,662,535 - MPMX20_04458 0.88 +0.8 4,662,609 + -1.5 4,662,609 + -0.2 4,662,619 + -0.7 4,662,627 - +0.4 4,662,701 + +0.8 4,662,709 - -1.2 4,662,816 + -0.6 4,662,821 + -1.9 4,662,821 + +0.1 4,662,824 - +1.8 4,662,824 - +0.8 4,662,829 - -1.0 4,662,829 - -0.1 4,662,829 - -2.1 4,662,829 - +1.2 4,662,863 + +1.6 4,662,882 - MPMX20_04459 0.10 -1.2 4,662,894 - MPMX20_04459 0.12 +2.2 4,662,929 + MPMX20_04459 0.16 +1.4 4,662,947 - MPMX20_04459 0.18 -1.6 4,662,960 + MPMX20_04459 0.19 +0.8 4,662,960 + MPMX20_04459 0.19 -2.2 4,662,988 + MPMX20_04459 0.23 -0.3 4,663,003 - MPMX20_04459 0.24 -0.1 4,663,006 + MPMX20_04459 0.25 +0.1 4,663,024 + MPMX20_04459 0.27 +1.1 4,663,024 + MPMX20_04459 0.27 +2.4 4,663,024 - MPMX20_04459 0.27 +2.4 4,663,024 - MPMX20_04459 0.27 -0.4 4,663,058 - MPMX20_04459 0.31 +2.2 4,663,075 - MPMX20_04459 0.33 +0.1 4,663,075 - MPMX20_04459 0.33 +0.1 4,663,118 + MPMX20_04459 0.37 -1.1 4,663,141 - MPMX20_04459 0.40 +0.6 4,663,153 + MPMX20_04459 0.41 -0.2 4,663,161 - MPMX20_04459 0.42 +0.4 4,663,189 + MPMX20_04459 0.46 +8.5 4,663,198 - MPMX20_04459 0.47 -0.7 4,663,198 - MPMX20_04459 0.47 -1.5 4,663,198 - MPMX20_04459 0.47 -0.7 4,663,248 + MPMX20_04459 0.52 +1.3 4,663,384 + MPMX20_04459 0.68 -0.5 4,663,438 - MPMX20_04459 0.74 -2.6 4,663,549 + MPMX20_04459 0.87 -0.2 4,663,552 - MPMX20_04459 0.87 -1.5 4,663,562 - MPMX20_04459 0.89 +0.1 4,663,602 + -2.3 4,663,610 - +4.1 4,663,612 + +1.4 4,663,612 + -0.1 4,663,617 + -0.8 4,663,620 - -0.7 4,663,644 + +1.4 4,663,644 + +0.6 4,663,644 + +0.6 4,663,644 + -3.0 4,663,647 - -0.7 4,663,647 - -0.6 4,663,652 - -1.5 4,663,652 - -0.2 4,663,652 - -4.1 4,663,652 - -0.9 4,663,652 - +2.4 4,663,667 + +0.1 4,663,667 + +1.1 4,663,667 - -0.8 4,663,682 + +0.2 4,663,891 + MPMX20_04460 0.15 +0.4 4,663,897 - MPMX20_04460 0.16 -0.2 4,663,943 - MPMX20_04460 0.26 -1.0 4,663,980 + MPMX20_04460 0.34 -0.7 4,663,988 - MPMX20_04460 0.35 +1.4 4,664,016 + MPMX20_04460 0.41 -0.3 4,664,047 - MPMX20_04460 0.48 +5.6 4,664,147 - MPMX20_04460 0.69 -0.4 4,664,192 - MPMX20_04460 0.79 -2.2 4,664,208 + MPMX20_04460 0.82 +0.4 4,664,238 + MPMX20_04460 0.89 +0.3 4,664,243 + MPMX20_04460 0.90 -0.7 4,664,248 + +0.1 4,664,248 + -1.8 4,664,248 + -1.9 4,664,248 + +0.2 4,664,248 + -1.7 4,664,248 + +0.1 4,664,256 - +0.1 4,664,256 - -0.6 4,664,256 - -0.8 4,664,275 - -0.7 4,664,282 - +0.3 4,664,365 + +0.8 4,664,380 - +2.1 4,664,380 - -1.4 4,664,387 - +0.4 4,664,455 - MPMX20_04461 0.13 -0.4 4,664,503 - MPMX20_04461 0.18 -1.5 4,664,511 + MPMX20_04461 0.19 +0.5 4,664,513 - MPMX20_04461 0.19 +0.1 4,664,556 + MPMX20_04461 0.24 -0.5 4,664,572 + MPMX20_04461 0.26 -0.6 4,664,584 + MPMX20_04461 0.27 +2.2 4,664,614 - MPMX20_04461 0.30 -1.5 4,664,614 - MPMX20_04461 0.30 -0.6 4,664,638 + MPMX20_04461 0.33 -0.5 4,664,643 + MPMX20_04461 0.34 -2.5 4,664,643 + MPMX20_04461 0.34 +0.1
Or see this region's nucleotide sequence