Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04334 and MPMX20_04335 are separated by 424 nucleotides MPMX20_04335 and MPMX20_04336 are separated by 86 nucleotides MPMX20_04336 and MPMX20_04337 are separated by 202 nucleotides
MPMX20_04334: MPMX20_04334 - Leucine-specific-binding protein, at 4,528,415 to 4,529,524
_04334
MPMX20_04335: MPMX20_04335 - PanD regulatory factor, at 4,529,949 to 4,530,341
_04335
MPMX20_04336: MPMX20_04336 - Leu/Ile/Val-binding protein, at 4,530,428 to 4,531,522
_04336
MPMX20_04337: MPMX20_04337 - 4-aminobutyrate aminotransferase PuuE, at 4,531,725 to 4,532,990
_04337
Position (kb)
4530
4531
4532 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 4529.443 kb on + strand at 4529.443 kb on + strand at 4529.451 kb on - strand at 4529.499 kb on + strand at 4529.516 kb on + strand at 4529.604 kb on + strand at 4529.766 kb on - strand at 4529.836 kb on - strand at 4529.969 kb on - strand at 4529.985 kb on + strand at 4529.998 kb on - strand, within MPMX20_04335 at 4530.006 kb on + strand, within MPMX20_04335 at 4530.031 kb on - strand, within MPMX20_04335 at 4530.051 kb on - strand, within MPMX20_04335 at 4530.062 kb on + strand, within MPMX20_04335 at 4530.062 kb on + strand, within MPMX20_04335 at 4530.070 kb on - strand, within MPMX20_04335 at 4530.070 kb on - strand, within MPMX20_04335 at 4530.119 kb on - strand, within MPMX20_04335 at 4530.132 kb on + strand, within MPMX20_04335 at 4530.140 kb on - strand, within MPMX20_04335 at 4530.185 kb on + strand, within MPMX20_04335 at 4530.193 kb on - strand, within MPMX20_04335 at 4530.295 kb on + strand, within MPMX20_04335 at 4530.327 kb on + strand at 4530.327 kb on + strand at 4530.493 kb on - strand at 4530.505 kb on + strand at 4530.507 kb on + strand at 4530.587 kb on + strand, within MPMX20_04336 at 4530.595 kb on - strand, within MPMX20_04336 at 4530.595 kb on - strand, within MPMX20_04336 at 4530.595 kb on - strand, within MPMX20_04336 at 4530.598 kb on + strand, within MPMX20_04336 at 4530.616 kb on - strand, within MPMX20_04336 at 4530.635 kb on - strand, within MPMX20_04336 at 4530.706 kb on - strand, within MPMX20_04336 at 4530.742 kb on - strand, within MPMX20_04336 at 4530.742 kb on - strand, within MPMX20_04336 at 4530.756 kb on + strand, within MPMX20_04336 at 4530.756 kb on + strand, within MPMX20_04336 at 4530.854 kb on - strand, within MPMX20_04336 at 4530.920 kb on - strand, within MPMX20_04336 at 4530.983 kb on + strand, within MPMX20_04336 at 4530.983 kb on + strand, within MPMX20_04336 at 4531.005 kb on - strand, within MPMX20_04336 at 4531.006 kb on - strand, within MPMX20_04336 at 4531.006 kb on - strand, within MPMX20_04336 at 4531.051 kb on + strand, within MPMX20_04336 at 4531.083 kb on + strand, within MPMX20_04336 at 4531.083 kb on + strand, within MPMX20_04336 at 4531.088 kb on + strand, within MPMX20_04336 at 4531.091 kb on - strand, within MPMX20_04336 at 4531.091 kb on - strand, within MPMX20_04336 at 4531.126 kb on + strand, within MPMX20_04336 at 4531.126 kb on + strand, within MPMX20_04336 at 4531.134 kb on - strand, within MPMX20_04336 at 4531.155 kb on - strand, within MPMX20_04336 at 4531.206 kb on + strand, within MPMX20_04336 at 4531.227 kb on + strand, within MPMX20_04336 at 4531.227 kb on + strand, within MPMX20_04336 at 4531.232 kb on + strand, within MPMX20_04336 at 4531.260 kb on + strand, within MPMX20_04336 at 4531.267 kb on + strand, within MPMX20_04336 at 4531.270 kb on - strand, within MPMX20_04336 at 4531.341 kb on + strand, within MPMX20_04336 at 4531.359 kb on + strand, within MPMX20_04336 at 4531.376 kb on + strand, within MPMX20_04336 at 4531.389 kb on - strand, within MPMX20_04336 at 4531.406 kb on + strand, within MPMX20_04336 at 4531.422 kb on - strand at 4531.450 kb on + strand at 4531.473 kb on - strand at 4531.473 kb on - strand at 4531.494 kb on + strand at 4531.497 kb on - strand at 4531.551 kb on + strand at 4531.608 kb on - strand at 4531.681 kb on + strand at 4531.715 kb on + strand at 4531.715 kb on + strand at 4531.715 kb on + strand at 4531.723 kb on - strand at 4531.723 kb on - strand at 4531.723 kb on - strand at 4531.723 kb on - strand at 4531.724 kb on - strand at 4531.730 kb on - strand at 4531.730 kb on - strand at 4531.767 kb on + strand at 4531.767 kb on + strand at 4531.767 kb on + strand at 4531.777 kb on - strand at 4531.823 kb on - strand at 4531.831 kb on - strand at 4531.863 kb on + strand, within MPMX20_04337 at 4531.863 kb on + strand, within MPMX20_04337 at 4531.863 kb on + strand, within MPMX20_04337 at 4531.871 kb on - strand, within MPMX20_04337 at 4531.872 kb on - strand, within MPMX20_04337 at 4531.931 kb on + strand, within MPMX20_04337 at 4531.977 kb on - strand, within MPMX20_04337 at 4531.981 kb on + strand, within MPMX20_04337 at 4532.006 kb on - strand, within MPMX20_04337 at 4532.032 kb on + strand, within MPMX20_04337 at 4532.063 kb on + strand, within MPMX20_04337 at 4532.064 kb on + strand, within MPMX20_04337 at 4532.112 kb on - strand, within MPMX20_04337 at 4532.128 kb on + strand, within MPMX20_04337 at 4532.134 kb on + strand, within MPMX20_04337 at 4532.226 kb on - strand, within MPMX20_04337 at 4532.369 kb on + strand, within MPMX20_04337 at 4532.419 kb on - strand, within MPMX20_04337 at 4532.455 kb on - strand, within MPMX20_04337 at 4532.466 kb on + strand, within MPMX20_04337 at 4532.499 kb on - strand, within MPMX20_04337
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 4,529,443 + -1.3 4,529,443 + -2.2 4,529,451 - +0.1 4,529,499 + +0.1 4,529,516 + -0.3 4,529,604 + -1.7 4,529,766 - +0.4 4,529,836 - -1.5 4,529,969 - -0.8 4,529,985 + -1.1 4,529,998 - MPMX20_04335 0.12 -0.4 4,530,006 + MPMX20_04335 0.15 +3.1 4,530,031 - MPMX20_04335 0.21 +0.1 4,530,051 - MPMX20_04335 0.26 -1.7 4,530,062 + MPMX20_04335 0.29 +0.3 4,530,062 + MPMX20_04335 0.29 +0.6 4,530,070 - MPMX20_04335 0.31 -1.6 4,530,070 - MPMX20_04335 0.31 +0.4 4,530,119 - MPMX20_04335 0.43 -2.5 4,530,132 + MPMX20_04335 0.47 +0.4 4,530,140 - MPMX20_04335 0.49 -3.8 4,530,185 + MPMX20_04335 0.60 +2.5 4,530,193 - MPMX20_04335 0.62 -0.6 4,530,295 + MPMX20_04335 0.88 +0.7 4,530,327 + -1.4 4,530,327 + +0.0 4,530,493 - +0.9 4,530,505 + +3.0 4,530,507 + +0.1 4,530,587 + MPMX20_04336 0.15 +1.7 4,530,595 - MPMX20_04336 0.15 +0.2 4,530,595 - MPMX20_04336 0.15 +0.5 4,530,595 - MPMX20_04336 0.15 +0.1 4,530,598 + MPMX20_04336 0.16 -0.4 4,530,616 - MPMX20_04336 0.17 +1.4 4,530,635 - MPMX20_04336 0.19 +0.8 4,530,706 - MPMX20_04336 0.25 -0.4 4,530,742 - MPMX20_04336 0.29 +0.1 4,530,742 - MPMX20_04336 0.29 +0.6 4,530,756 + MPMX20_04336 0.30 -0.6 4,530,756 + MPMX20_04336 0.30 +0.8 4,530,854 - MPMX20_04336 0.39 +0.4 4,530,920 - MPMX20_04336 0.45 +1.4 4,530,983 + MPMX20_04336 0.51 +0.4 4,530,983 + MPMX20_04336 0.51 -0.2 4,531,005 - MPMX20_04336 0.53 +0.1 4,531,006 - MPMX20_04336 0.53 -3.4 4,531,006 - MPMX20_04336 0.53 -0.4 4,531,051 + MPMX20_04336 0.57 +0.9 4,531,083 + MPMX20_04336 0.60 +2.4 4,531,083 + MPMX20_04336 0.60 +4.7 4,531,088 + MPMX20_04336 0.60 -0.4 4,531,091 - MPMX20_04336 0.61 -1.8 4,531,091 - MPMX20_04336 0.61 +2.0 4,531,126 + MPMX20_04336 0.64 -1.5 4,531,126 + MPMX20_04336 0.64 +2.2 4,531,134 - MPMX20_04336 0.64 -2.4 4,531,155 - MPMX20_04336 0.66 +0.8 4,531,206 + MPMX20_04336 0.71 +0.4 4,531,227 + MPMX20_04336 0.73 -0.0 4,531,227 + MPMX20_04336 0.73 -1.0 4,531,232 + MPMX20_04336 0.73 -1.8 4,531,260 + MPMX20_04336 0.76 +0.4 4,531,267 + MPMX20_04336 0.77 +2.6 4,531,270 - MPMX20_04336 0.77 +0.3 4,531,341 + MPMX20_04336 0.83 +0.1 4,531,359 + MPMX20_04336 0.85 -1.2 4,531,376 + MPMX20_04336 0.87 +0.8 4,531,389 - MPMX20_04336 0.88 +0.1 4,531,406 + MPMX20_04336 0.89 -0.5 4,531,422 - -1.0 4,531,450 + -0.9 4,531,473 - -2.2 4,531,473 - +1.0 4,531,494 + +2.8 4,531,497 - +2.9 4,531,551 + +0.0 4,531,608 - +0.4 4,531,681 + -1.0 4,531,715 + +0.8 4,531,715 + +0.1 4,531,715 + -0.6 4,531,723 - +1.5 4,531,723 - -0.9 4,531,723 - -0.2 4,531,723 - -0.8 4,531,724 - +0.2 4,531,730 - +8.3 4,531,730 - +3.0 4,531,767 + -1.7 4,531,767 + -0.4 4,531,767 + -0.4 4,531,777 - -1.3 4,531,823 - -0.7 4,531,831 - +2.6 4,531,863 + MPMX20_04337 0.11 +0.4 4,531,863 + MPMX20_04337 0.11 -0.0 4,531,863 + MPMX20_04337 0.11 -2.3 4,531,871 - MPMX20_04337 0.12 +0.4 4,531,872 - MPMX20_04337 0.12 +0.5 4,531,931 + MPMX20_04337 0.16 -1.6 4,531,977 - MPMX20_04337 0.20 +0.5 4,531,981 + MPMX20_04337 0.20 -1.2 4,532,006 - MPMX20_04337 0.22 +1.7 4,532,032 + MPMX20_04337 0.24 -0.8 4,532,063 + MPMX20_04337 0.27 +1.6 4,532,064 + MPMX20_04337 0.27 -1.2 4,532,112 - MPMX20_04337 0.31 -1.8 4,532,128 + MPMX20_04337 0.32 +0.8 4,532,134 + MPMX20_04337 0.32 -0.3 4,532,226 - MPMX20_04337 0.40 +2.4 4,532,369 + MPMX20_04337 0.51 -1.8 4,532,419 - MPMX20_04337 0.55 -0.4 4,532,455 - MPMX20_04337 0.58 -1.5 4,532,466 + MPMX20_04337 0.59 -2.8 4,532,499 - MPMX20_04337 0.61 +2.0
Or see this region's nucleotide sequence