Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04336

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04334 and MPMX20_04335 are separated by 424 nucleotidesMPMX20_04335 and MPMX20_04336 are separated by 86 nucleotidesMPMX20_04336 and MPMX20_04337 are separated by 202 nucleotides MPMX20_04334: MPMX20_04334 - Leucine-specific-binding protein, at 4,528,415 to 4,529,524 _04334 MPMX20_04335: MPMX20_04335 - PanD regulatory factor, at 4,529,949 to 4,530,341 _04335 MPMX20_04336: MPMX20_04336 - Leu/Ile/Val-binding protein, at 4,530,428 to 4,531,522 _04336 MPMX20_04337: MPMX20_04337 - 4-aminobutyrate aminotransferase PuuE, at 4,531,725 to 4,532,990 _04337 Position (kb) 4530 4531 4532Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 4529.443 kb on + strandat 4529.443 kb on + strandat 4529.451 kb on - strandat 4529.499 kb on + strandat 4529.516 kb on + strandat 4529.604 kb on + strandat 4529.766 kb on - strandat 4529.836 kb on - strandat 4529.969 kb on - strandat 4529.985 kb on + strandat 4529.998 kb on - strand, within MPMX20_04335at 4530.006 kb on + strand, within MPMX20_04335at 4530.031 kb on - strand, within MPMX20_04335at 4530.051 kb on - strand, within MPMX20_04335at 4530.062 kb on + strand, within MPMX20_04335at 4530.062 kb on + strand, within MPMX20_04335at 4530.070 kb on - strand, within MPMX20_04335at 4530.070 kb on - strand, within MPMX20_04335at 4530.119 kb on - strand, within MPMX20_04335at 4530.132 kb on + strand, within MPMX20_04335at 4530.140 kb on - strand, within MPMX20_04335at 4530.185 kb on + strand, within MPMX20_04335at 4530.193 kb on - strand, within MPMX20_04335at 4530.295 kb on + strand, within MPMX20_04335at 4530.327 kb on + strandat 4530.327 kb on + strandat 4530.493 kb on - strandat 4530.505 kb on + strandat 4530.507 kb on + strandat 4530.587 kb on + strand, within MPMX20_04336at 4530.595 kb on - strand, within MPMX20_04336at 4530.595 kb on - strand, within MPMX20_04336at 4530.595 kb on - strand, within MPMX20_04336at 4530.598 kb on + strand, within MPMX20_04336at 4530.616 kb on - strand, within MPMX20_04336at 4530.635 kb on - strand, within MPMX20_04336at 4530.706 kb on - strand, within MPMX20_04336at 4530.742 kb on - strand, within MPMX20_04336at 4530.742 kb on - strand, within MPMX20_04336at 4530.756 kb on + strand, within MPMX20_04336at 4530.756 kb on + strand, within MPMX20_04336at 4530.854 kb on - strand, within MPMX20_04336at 4530.920 kb on - strand, within MPMX20_04336at 4530.983 kb on + strand, within MPMX20_04336at 4530.983 kb on + strand, within MPMX20_04336at 4531.005 kb on - strand, within MPMX20_04336at 4531.006 kb on - strand, within MPMX20_04336at 4531.006 kb on - strand, within MPMX20_04336at 4531.051 kb on + strand, within MPMX20_04336at 4531.083 kb on + strand, within MPMX20_04336at 4531.083 kb on + strand, within MPMX20_04336at 4531.088 kb on + strand, within MPMX20_04336at 4531.091 kb on - strand, within MPMX20_04336at 4531.091 kb on - strand, within MPMX20_04336at 4531.126 kb on + strand, within MPMX20_04336at 4531.126 kb on + strand, within MPMX20_04336at 4531.134 kb on - strand, within MPMX20_04336at 4531.155 kb on - strand, within MPMX20_04336at 4531.206 kb on + strand, within MPMX20_04336at 4531.227 kb on + strand, within MPMX20_04336at 4531.227 kb on + strand, within MPMX20_04336at 4531.232 kb on + strand, within MPMX20_04336at 4531.260 kb on + strand, within MPMX20_04336at 4531.267 kb on + strand, within MPMX20_04336at 4531.270 kb on - strand, within MPMX20_04336at 4531.341 kb on + strand, within MPMX20_04336at 4531.359 kb on + strand, within MPMX20_04336at 4531.376 kb on + strand, within MPMX20_04336at 4531.389 kb on - strand, within MPMX20_04336at 4531.406 kb on + strand, within MPMX20_04336at 4531.422 kb on - strandat 4531.450 kb on + strandat 4531.473 kb on - strandat 4531.473 kb on - strandat 4531.494 kb on + strandat 4531.497 kb on - strandat 4531.551 kb on + strandat 4531.608 kb on - strandat 4531.681 kb on + strandat 4531.715 kb on + strandat 4531.715 kb on + strandat 4531.715 kb on + strandat 4531.723 kb on - strandat 4531.723 kb on - strandat 4531.723 kb on - strandat 4531.723 kb on - strandat 4531.724 kb on - strandat 4531.730 kb on - strandat 4531.730 kb on - strandat 4531.767 kb on + strandat 4531.767 kb on + strandat 4531.767 kb on + strandat 4531.777 kb on - strandat 4531.823 kb on - strandat 4531.831 kb on - strandat 4531.863 kb on + strand, within MPMX20_04337at 4531.863 kb on + strand, within MPMX20_04337at 4531.863 kb on + strand, within MPMX20_04337at 4531.871 kb on - strand, within MPMX20_04337at 4531.872 kb on - strand, within MPMX20_04337at 4531.931 kb on + strand, within MPMX20_04337at 4531.977 kb on - strand, within MPMX20_04337at 4531.981 kb on + strand, within MPMX20_04337at 4532.006 kb on - strand, within MPMX20_04337at 4532.032 kb on + strand, within MPMX20_04337at 4532.063 kb on + strand, within MPMX20_04337at 4532.064 kb on + strand, within MPMX20_04337at 4532.112 kb on - strand, within MPMX20_04337at 4532.128 kb on + strand, within MPMX20_04337at 4532.134 kb on + strand, within MPMX20_04337at 4532.226 kb on - strand, within MPMX20_04337at 4532.369 kb on + strand, within MPMX20_04337at 4532.419 kb on - strand, within MPMX20_04337at 4532.455 kb on - strand, within MPMX20_04337at 4532.466 kb on + strand, within MPMX20_04337at 4532.499 kb on - strand, within MPMX20_04337

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
remove
4,529,443 + -1.3
4,529,443 + -2.2
4,529,451 - +0.1
4,529,499 + +0.1
4,529,516 + -0.3
4,529,604 + -1.7
4,529,766 - +0.4
4,529,836 - -1.5
4,529,969 - -0.8
4,529,985 + -1.1
4,529,998 - MPMX20_04335 0.12 -0.4
4,530,006 + MPMX20_04335 0.15 +3.1
4,530,031 - MPMX20_04335 0.21 +0.1
4,530,051 - MPMX20_04335 0.26 -1.7
4,530,062 + MPMX20_04335 0.29 +0.3
4,530,062 + MPMX20_04335 0.29 +0.6
4,530,070 - MPMX20_04335 0.31 -1.6
4,530,070 - MPMX20_04335 0.31 +0.4
4,530,119 - MPMX20_04335 0.43 -2.5
4,530,132 + MPMX20_04335 0.47 +0.4
4,530,140 - MPMX20_04335 0.49 -3.8
4,530,185 + MPMX20_04335 0.60 +2.5
4,530,193 - MPMX20_04335 0.62 -0.6
4,530,295 + MPMX20_04335 0.88 +0.7
4,530,327 + -1.4
4,530,327 + +0.0
4,530,493 - +0.9
4,530,505 + +3.0
4,530,507 + +0.1
4,530,587 + MPMX20_04336 0.15 +1.7
4,530,595 - MPMX20_04336 0.15 +0.2
4,530,595 - MPMX20_04336 0.15 +0.5
4,530,595 - MPMX20_04336 0.15 +0.1
4,530,598 + MPMX20_04336 0.16 -0.4
4,530,616 - MPMX20_04336 0.17 +1.4
4,530,635 - MPMX20_04336 0.19 +0.8
4,530,706 - MPMX20_04336 0.25 -0.4
4,530,742 - MPMX20_04336 0.29 +0.1
4,530,742 - MPMX20_04336 0.29 +0.6
4,530,756 + MPMX20_04336 0.30 -0.6
4,530,756 + MPMX20_04336 0.30 +0.8
4,530,854 - MPMX20_04336 0.39 +0.4
4,530,920 - MPMX20_04336 0.45 +1.4
4,530,983 + MPMX20_04336 0.51 +0.4
4,530,983 + MPMX20_04336 0.51 -0.2
4,531,005 - MPMX20_04336 0.53 +0.1
4,531,006 - MPMX20_04336 0.53 -3.4
4,531,006 - MPMX20_04336 0.53 -0.4
4,531,051 + MPMX20_04336 0.57 +0.9
4,531,083 + MPMX20_04336 0.60 +2.4
4,531,083 + MPMX20_04336 0.60 +4.7
4,531,088 + MPMX20_04336 0.60 -0.4
4,531,091 - MPMX20_04336 0.61 -1.8
4,531,091 - MPMX20_04336 0.61 +2.0
4,531,126 + MPMX20_04336 0.64 -1.5
4,531,126 + MPMX20_04336 0.64 +2.2
4,531,134 - MPMX20_04336 0.64 -2.4
4,531,155 - MPMX20_04336 0.66 +0.8
4,531,206 + MPMX20_04336 0.71 +0.4
4,531,227 + MPMX20_04336 0.73 -0.0
4,531,227 + MPMX20_04336 0.73 -1.0
4,531,232 + MPMX20_04336 0.73 -1.8
4,531,260 + MPMX20_04336 0.76 +0.4
4,531,267 + MPMX20_04336 0.77 +2.6
4,531,270 - MPMX20_04336 0.77 +0.3
4,531,341 + MPMX20_04336 0.83 +0.1
4,531,359 + MPMX20_04336 0.85 -1.2
4,531,376 + MPMX20_04336 0.87 +0.8
4,531,389 - MPMX20_04336 0.88 +0.1
4,531,406 + MPMX20_04336 0.89 -0.5
4,531,422 - -1.0
4,531,450 + -0.9
4,531,473 - -2.2
4,531,473 - +1.0
4,531,494 + +2.8
4,531,497 - +2.9
4,531,551 + +0.0
4,531,608 - +0.4
4,531,681 + -1.0
4,531,715 + +0.8
4,531,715 + +0.1
4,531,715 + -0.6
4,531,723 - +1.5
4,531,723 - -0.9
4,531,723 - -0.2
4,531,723 - -0.8
4,531,724 - +0.2
4,531,730 - +8.3
4,531,730 - +3.0
4,531,767 + -1.7
4,531,767 + -0.4
4,531,767 + -0.4
4,531,777 - -1.3
4,531,823 - -0.7
4,531,831 - +2.6
4,531,863 + MPMX20_04337 0.11 +0.4
4,531,863 + MPMX20_04337 0.11 -0.0
4,531,863 + MPMX20_04337 0.11 -2.3
4,531,871 - MPMX20_04337 0.12 +0.4
4,531,872 - MPMX20_04337 0.12 +0.5
4,531,931 + MPMX20_04337 0.16 -1.6
4,531,977 - MPMX20_04337 0.20 +0.5
4,531,981 + MPMX20_04337 0.20 -1.2
4,532,006 - MPMX20_04337 0.22 +1.7
4,532,032 + MPMX20_04337 0.24 -0.8
4,532,063 + MPMX20_04337 0.27 +1.6
4,532,064 + MPMX20_04337 0.27 -1.2
4,532,112 - MPMX20_04337 0.31 -1.8
4,532,128 + MPMX20_04337 0.32 +0.8
4,532,134 + MPMX20_04337 0.32 -0.3
4,532,226 - MPMX20_04337 0.40 +2.4
4,532,369 + MPMX20_04337 0.51 -1.8
4,532,419 - MPMX20_04337 0.55 -0.4
4,532,455 - MPMX20_04337 0.58 -1.5
4,532,466 + MPMX20_04337 0.59 -2.8
4,532,499 - MPMX20_04337 0.61 +2.0

Or see this region's nucleotide sequence