Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04291 and MPMX20_04292 overlap by 4 nucleotides MPMX20_04292 and MPMX20_04293 are separated by 232 nucleotides MPMX20_04293 and MPMX20_04294 are separated by 88 nucleotides
MPMX20_04291: MPMX20_04291 - Osmolarity sensor protein EnvZ, at 4,475,757 to 4,477,103
_04291
MPMX20_04292: MPMX20_04292 - Transcriptional regulatory protein OmpR, at 4,477,100 to 4,477,819
_04292
MPMX20_04293: MPMX20_04293 - Transcription elongation factor GreB, at 4,478,052 to 4,478,525
_04293
MPMX20_04294: MPMX20_04294 - Protein YhgF, at 4,478,614 to 4,480,944
_04294
Position (kb)
4477
4478 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4476.235 kb on + strand, within MPMX20_04291 at 4476.255 kb on - strand, within MPMX20_04291 at 4476.268 kb on + strand, within MPMX20_04291 at 4476.276 kb on - strand, within MPMX20_04291 at 4476.276 kb on - strand, within MPMX20_04291 at 4476.276 kb on - strand, within MPMX20_04291 at 4476.338 kb on - strand, within MPMX20_04291 at 4476.371 kb on + strand, within MPMX20_04291 at 4476.371 kb on + strand, within MPMX20_04291 at 4476.379 kb on - strand, within MPMX20_04291 at 4476.379 kb on - strand, within MPMX20_04291 at 4476.379 kb on - strand, within MPMX20_04291 at 4476.379 kb on - strand, within MPMX20_04291 at 4476.379 kb on - strand, within MPMX20_04291 at 4476.379 kb on - strand, within MPMX20_04291 at 4476.406 kb on - strand, within MPMX20_04291 at 4476.411 kb on - strand, within MPMX20_04291 at 4476.419 kb on + strand, within MPMX20_04291 at 4476.508 kb on - strand, within MPMX20_04291 at 4476.527 kb on - strand, within MPMX20_04291 at 4476.527 kb on - strand, within MPMX20_04291 at 4476.533 kb on + strand, within MPMX20_04291 at 4476.533 kb on + strand, within MPMX20_04291 at 4476.541 kb on - strand, within MPMX20_04291 at 4476.541 kb on - strand, within MPMX20_04291 at 4476.599 kb on + strand, within MPMX20_04291 at 4476.599 kb on + strand, within MPMX20_04291 at 4476.607 kb on - strand, within MPMX20_04291 at 4476.607 kb on - strand, within MPMX20_04291 at 4476.754 kb on + strand, within MPMX20_04291 at 4476.778 kb on + strand, within MPMX20_04291 at 4476.799 kb on + strand, within MPMX20_04291 at 4476.799 kb on + strand, within MPMX20_04291 at 4476.804 kb on + strand, within MPMX20_04291 at 4476.812 kb on - strand, within MPMX20_04291 at 4476.859 kb on + strand, within MPMX20_04291 at 4477.007 kb on + strand at 4477.066 kb on - strand at 4477.133 kb on + strand at 4477.141 kb on - strand at 4477.141 kb on - strand at 4477.240 kb on + strand, within MPMX20_04292 at 4477.240 kb on + strand, within MPMX20_04292 at 4477.240 kb on + strand, within MPMX20_04292 at 4477.240 kb on + strand, within MPMX20_04292 at 4477.240 kb on + strand, within MPMX20_04292 at 4477.248 kb on - strand, within MPMX20_04292 at 4477.248 kb on - strand, within MPMX20_04292 at 4477.356 kb on + strand, within MPMX20_04292 at 4477.374 kb on - strand, within MPMX20_04292 at 4477.386 kb on + strand, within MPMX20_04292 at 4477.434 kb on - strand, within MPMX20_04292 at 4477.588 kb on + strand, within MPMX20_04292 at 4477.588 kb on + strand, within MPMX20_04292 at 4477.588 kb on + strand, within MPMX20_04292 at 4477.593 kb on + strand, within MPMX20_04292 at 4477.612 kb on + strand, within MPMX20_04292 at 4477.642 kb on - strand, within MPMX20_04292 at 4477.693 kb on - strand, within MPMX20_04292 at 4477.695 kb on + strand, within MPMX20_04292 at 4477.705 kb on + strand, within MPMX20_04292 at 4477.705 kb on + strand, within MPMX20_04292 at 4477.718 kb on - strand, within MPMX20_04292 at 4477.718 kb on - strand, within MPMX20_04292 at 4477.736 kb on + strand, within MPMX20_04292 at 4477.755 kb on + strand at 4477.763 kb on - strand at 4477.763 kb on - strand at 4477.774 kb on + strand at 4477.816 kb on + strand at 4477.830 kb on + strand at 4477.837 kb on - strand at 4477.879 kb on + strand at 4477.986 kb on + strand at 4477.986 kb on + strand at 4477.994 kb on - strand at 4477.994 kb on - strand at 4477.994 kb on - strand at 4477.994 kb on - strand at 4477.994 kb on - strand at 4477.994 kb on - strand at 4477.994 kb on - strand at 4478.010 kb on - strand at 4478.010 kb on - strand at 4478.044 kb on - strand at 4478.044 kb on - strand at 4478.044 kb on - strand at 4478.079 kb on + strand at 4478.079 kb on + strand at 4478.087 kb on - strand at 4478.087 kb on - strand at 4478.105 kb on + strand, within MPMX20_04293 at 4478.106 kb on + strand, within MPMX20_04293 at 4478.113 kb on - strand, within MPMX20_04293 at 4478.136 kb on - strand, within MPMX20_04293 at 4478.136 kb on - strand, within MPMX20_04293 at 4478.136 kb on - strand, within MPMX20_04293 at 4478.150 kb on + strand, within MPMX20_04293 at 4478.171 kb on - strand, within MPMX20_04293 at 4478.206 kb on + strand, within MPMX20_04293 at 4478.262 kb on - strand, within MPMX20_04293 at 4478.264 kb on + strand, within MPMX20_04293 at 4478.272 kb on - strand, within MPMX20_04293 at 4478.281 kb on + strand, within MPMX20_04293 at 4478.284 kb on + strand, within MPMX20_04293 at 4478.284 kb on - strand, within MPMX20_04293 at 4478.289 kb on - strand, within MPMX20_04293 at 4478.321 kb on + strand, within MPMX20_04293 at 4478.344 kb on + strand, within MPMX20_04293 at 4478.352 kb on - strand, within MPMX20_04293 at 4478.397 kb on + strand, within MPMX20_04293 at 4478.405 kb on - strand, within MPMX20_04293 at 4478.426 kb on - strand, within MPMX20_04293 at 4478.426 kb on - strand, within MPMX20_04293 at 4478.523 kb on - strand at 4478.533 kb on - strand at 4478.559 kb on + strand at 4478.574 kb on + strand at 4478.653 kb on + strand at 4478.653 kb on + strand at 4478.658 kb on + strand at 4478.661 kb on - strand at 4478.661 kb on - strand at 4478.666 kb on - strand at 4478.673 kb on + strand at 4478.692 kb on - strand at 4478.709 kb on + strand at 4478.735 kb on + strand at 4478.751 kb on - strand at 4478.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 4,476,235 + MPMX20_04291 0.35 -0.8 4,476,255 - MPMX20_04291 0.37 -0.6 4,476,268 + MPMX20_04291 0.38 -0.9 4,476,276 - MPMX20_04291 0.39 -0.3 4,476,276 - MPMX20_04291 0.39 -0.5 4,476,276 - MPMX20_04291 0.39 +0.3 4,476,338 - MPMX20_04291 0.43 +1.0 4,476,371 + MPMX20_04291 0.46 +0.2 4,476,371 + MPMX20_04291 0.46 +2.4 4,476,379 - MPMX20_04291 0.46 +0.5 4,476,379 - MPMX20_04291 0.46 +1.5 4,476,379 - MPMX20_04291 0.46 -0.4 4,476,379 - MPMX20_04291 0.46 +0.6 4,476,379 - MPMX20_04291 0.46 +1.1 4,476,379 - MPMX20_04291 0.46 -2.4 4,476,406 - MPMX20_04291 0.48 +1.4 4,476,411 - MPMX20_04291 0.49 -1.3 4,476,419 + MPMX20_04291 0.49 -0.2 4,476,508 - MPMX20_04291 0.56 +1.5 4,476,527 - MPMX20_04291 0.57 -0.8 4,476,527 - MPMX20_04291 0.57 -0.8 4,476,533 + MPMX20_04291 0.58 -2.3 4,476,533 + MPMX20_04291 0.58 -1.5 4,476,541 - MPMX20_04291 0.58 +0.6 4,476,541 - MPMX20_04291 0.58 +0.5 4,476,599 + MPMX20_04291 0.63 +0.8 4,476,599 + MPMX20_04291 0.63 +0.2 4,476,607 - MPMX20_04291 0.63 +1.4 4,476,607 - MPMX20_04291 0.63 -1.6 4,476,754 + MPMX20_04291 0.74 +2.4 4,476,778 + MPMX20_04291 0.76 +0.2 4,476,799 + MPMX20_04291 0.77 +2.0 4,476,799 + MPMX20_04291 0.77 +1.2 4,476,804 + MPMX20_04291 0.78 -0.2 4,476,812 - MPMX20_04291 0.78 +0.3 4,476,859 + MPMX20_04291 0.82 -0.1 4,477,007 + -0.6 4,477,066 - +1.3 4,477,133 + -1.2 4,477,141 - +0.4 4,477,141 - -2.1 4,477,240 + MPMX20_04292 0.19 -0.8 4,477,240 + MPMX20_04292 0.19 -0.4 4,477,240 + MPMX20_04292 0.19 +0.7 4,477,240 + MPMX20_04292 0.19 +0.4 4,477,240 + MPMX20_04292 0.19 +2.4 4,477,248 - MPMX20_04292 0.21 +0.8 4,477,248 - MPMX20_04292 0.21 +1.8 4,477,356 + MPMX20_04292 0.36 +0.7 4,477,374 - MPMX20_04292 0.38 +1.2 4,477,386 + MPMX20_04292 0.40 +1.7 4,477,434 - MPMX20_04292 0.46 +1.4 4,477,588 + MPMX20_04292 0.68 +0.9 4,477,588 + MPMX20_04292 0.68 -0.1 4,477,588 + MPMX20_04292 0.68 -0.1 4,477,593 + MPMX20_04292 0.68 -0.0 4,477,612 + MPMX20_04292 0.71 +1.0 4,477,642 - MPMX20_04292 0.75 +1.1 4,477,693 - MPMX20_04292 0.82 -0.0 4,477,695 + MPMX20_04292 0.83 +0.2 4,477,705 + MPMX20_04292 0.84 +1.4 4,477,705 + MPMX20_04292 0.84 +2.2 4,477,718 - MPMX20_04292 0.86 +0.7 4,477,718 - MPMX20_04292 0.86 +0.4 4,477,736 + MPMX20_04292 0.88 +1.3 4,477,755 + -0.4 4,477,763 - +0.8 4,477,763 - -1.6 4,477,774 + +1.4 4,477,816 + -1.2 4,477,830 + -2.4 4,477,837 - +2.4 4,477,879 + -0.4 4,477,986 + +2.8 4,477,986 + +1.8 4,477,994 - -0.1 4,477,994 - -0.3 4,477,994 - +1.8 4,477,994 - +1.4 4,477,994 - -0.0 4,477,994 - -0.6 4,477,994 - -2.1 4,478,010 - -1.0 4,478,010 - +0.1 4,478,044 - +0.7 4,478,044 - -0.2 4,478,044 - +0.1 4,478,079 + -1.7 4,478,079 + +0.3 4,478,087 - +2.4 4,478,087 - +0.1 4,478,105 + MPMX20_04293 0.11 +0.1 4,478,106 + MPMX20_04293 0.11 -0.9 4,478,113 - MPMX20_04293 0.13 +3.1 4,478,136 - MPMX20_04293 0.18 +1.4 4,478,136 - MPMX20_04293 0.18 +0.7 4,478,136 - MPMX20_04293 0.18 -2.2 4,478,150 + MPMX20_04293 0.21 -1.1 4,478,171 - MPMX20_04293 0.25 -0.2 4,478,206 + MPMX20_04293 0.32 -0.9 4,478,262 - MPMX20_04293 0.44 -0.3 4,478,264 + MPMX20_04293 0.45 -1.9 4,478,272 - MPMX20_04293 0.46 +1.4 4,478,281 + MPMX20_04293 0.48 +0.4 4,478,284 + MPMX20_04293 0.49 +2.2 4,478,284 - MPMX20_04293 0.49 +0.8 4,478,289 - MPMX20_04293 0.50 +2.4 4,478,321 + MPMX20_04293 0.57 +0.8 4,478,344 + MPMX20_04293 0.62 +2.1 4,478,352 - MPMX20_04293 0.63 +3.0 4,478,397 + MPMX20_04293 0.73 +0.6 4,478,405 - MPMX20_04293 0.74 -0.2 4,478,426 - MPMX20_04293 0.79 +1.7 4,478,426 - MPMX20_04293 0.79 +1.4 4,478,523 - -0.7 4,478,533 - -0.0 4,478,559 + -0.9 4,478,574 + +0.6 4,478,653 + +0.1 4,478,653 + -0.2 4,478,658 + +2.8 4,478,661 - +1.8 4,478,661 - -0.9 4,478,666 - -1.0 4,478,673 + +2.4 4,478,692 - -0.5 4,478,709 + -0.8 4,478,735 + -0.4 4,478,751 - -1.2 4,478,809 + +2.7
Or see this region's nucleotide sequence