Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04292

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04291 and MPMX20_04292 overlap by 4 nucleotidesMPMX20_04292 and MPMX20_04293 are separated by 232 nucleotidesMPMX20_04293 and MPMX20_04294 are separated by 88 nucleotides MPMX20_04291: MPMX20_04291 - Osmolarity sensor protein EnvZ, at 4,475,757 to 4,477,103 _04291 MPMX20_04292: MPMX20_04292 - Transcriptional regulatory protein OmpR, at 4,477,100 to 4,477,819 _04292 MPMX20_04293: MPMX20_04293 - Transcription elongation factor GreB, at 4,478,052 to 4,478,525 _04293 MPMX20_04294: MPMX20_04294 - Protein YhgF, at 4,478,614 to 4,480,944 _04294 Position (kb) 4477 4478Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4476.235 kb on + strand, within MPMX20_04291at 4476.255 kb on - strand, within MPMX20_04291at 4476.268 kb on + strand, within MPMX20_04291at 4476.276 kb on - strand, within MPMX20_04291at 4476.276 kb on - strand, within MPMX20_04291at 4476.276 kb on - strand, within MPMX20_04291at 4476.338 kb on - strand, within MPMX20_04291at 4476.371 kb on + strand, within MPMX20_04291at 4476.371 kb on + strand, within MPMX20_04291at 4476.379 kb on - strand, within MPMX20_04291at 4476.379 kb on - strand, within MPMX20_04291at 4476.379 kb on - strand, within MPMX20_04291at 4476.379 kb on - strand, within MPMX20_04291at 4476.379 kb on - strand, within MPMX20_04291at 4476.379 kb on - strand, within MPMX20_04291at 4476.406 kb on - strand, within MPMX20_04291at 4476.411 kb on - strand, within MPMX20_04291at 4476.419 kb on + strand, within MPMX20_04291at 4476.508 kb on - strand, within MPMX20_04291at 4476.527 kb on - strand, within MPMX20_04291at 4476.527 kb on - strand, within MPMX20_04291at 4476.533 kb on + strand, within MPMX20_04291at 4476.533 kb on + strand, within MPMX20_04291at 4476.541 kb on - strand, within MPMX20_04291at 4476.541 kb on - strand, within MPMX20_04291at 4476.599 kb on + strand, within MPMX20_04291at 4476.599 kb on + strand, within MPMX20_04291at 4476.607 kb on - strand, within MPMX20_04291at 4476.607 kb on - strand, within MPMX20_04291at 4476.754 kb on + strand, within MPMX20_04291at 4476.778 kb on + strand, within MPMX20_04291at 4476.799 kb on + strand, within MPMX20_04291at 4476.799 kb on + strand, within MPMX20_04291at 4476.804 kb on + strand, within MPMX20_04291at 4476.812 kb on - strand, within MPMX20_04291at 4476.859 kb on + strand, within MPMX20_04291at 4477.007 kb on + strandat 4477.066 kb on - strandat 4477.133 kb on + strandat 4477.141 kb on - strandat 4477.141 kb on - strandat 4477.240 kb on + strand, within MPMX20_04292at 4477.240 kb on + strand, within MPMX20_04292at 4477.240 kb on + strand, within MPMX20_04292at 4477.240 kb on + strand, within MPMX20_04292at 4477.240 kb on + strand, within MPMX20_04292at 4477.248 kb on - strand, within MPMX20_04292at 4477.248 kb on - strand, within MPMX20_04292at 4477.356 kb on + strand, within MPMX20_04292at 4477.374 kb on - strand, within MPMX20_04292at 4477.386 kb on + strand, within MPMX20_04292at 4477.434 kb on - strand, within MPMX20_04292at 4477.588 kb on + strand, within MPMX20_04292at 4477.588 kb on + strand, within MPMX20_04292at 4477.588 kb on + strand, within MPMX20_04292at 4477.593 kb on + strand, within MPMX20_04292at 4477.612 kb on + strand, within MPMX20_04292at 4477.642 kb on - strand, within MPMX20_04292at 4477.693 kb on - strand, within MPMX20_04292at 4477.695 kb on + strand, within MPMX20_04292at 4477.705 kb on + strand, within MPMX20_04292at 4477.705 kb on + strand, within MPMX20_04292at 4477.718 kb on - strand, within MPMX20_04292at 4477.718 kb on - strand, within MPMX20_04292at 4477.736 kb on + strand, within MPMX20_04292at 4477.755 kb on + strandat 4477.763 kb on - strandat 4477.763 kb on - strandat 4477.774 kb on + strandat 4477.816 kb on + strandat 4477.830 kb on + strandat 4477.837 kb on - strandat 4477.879 kb on + strandat 4477.986 kb on + strandat 4477.986 kb on + strandat 4477.994 kb on - strandat 4477.994 kb on - strandat 4477.994 kb on - strandat 4477.994 kb on - strandat 4477.994 kb on - strandat 4477.994 kb on - strandat 4477.994 kb on - strandat 4478.010 kb on - strandat 4478.010 kb on - strandat 4478.044 kb on - strandat 4478.044 kb on - strandat 4478.044 kb on - strandat 4478.079 kb on + strandat 4478.079 kb on + strandat 4478.087 kb on - strandat 4478.087 kb on - strandat 4478.105 kb on + strand, within MPMX20_04293at 4478.106 kb on + strand, within MPMX20_04293at 4478.113 kb on - strand, within MPMX20_04293at 4478.136 kb on - strand, within MPMX20_04293at 4478.136 kb on - strand, within MPMX20_04293at 4478.136 kb on - strand, within MPMX20_04293at 4478.150 kb on + strand, within MPMX20_04293at 4478.171 kb on - strand, within MPMX20_04293at 4478.206 kb on + strand, within MPMX20_04293at 4478.262 kb on - strand, within MPMX20_04293at 4478.264 kb on + strand, within MPMX20_04293at 4478.272 kb on - strand, within MPMX20_04293at 4478.281 kb on + strand, within MPMX20_04293at 4478.284 kb on + strand, within MPMX20_04293at 4478.284 kb on - strand, within MPMX20_04293at 4478.289 kb on - strand, within MPMX20_04293at 4478.321 kb on + strand, within MPMX20_04293at 4478.344 kb on + strand, within MPMX20_04293at 4478.352 kb on - strand, within MPMX20_04293at 4478.397 kb on + strand, within MPMX20_04293at 4478.405 kb on - strand, within MPMX20_04293at 4478.426 kb on - strand, within MPMX20_04293at 4478.426 kb on - strand, within MPMX20_04293at 4478.523 kb on - strandat 4478.533 kb on - strandat 4478.559 kb on + strandat 4478.574 kb on + strandat 4478.653 kb on + strandat 4478.653 kb on + strandat 4478.658 kb on + strandat 4478.661 kb on - strandat 4478.661 kb on - strandat 4478.666 kb on - strandat 4478.673 kb on + strandat 4478.692 kb on - strandat 4478.709 kb on + strandat 4478.735 kb on + strandat 4478.751 kb on - strandat 4478.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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4,476,235 + MPMX20_04291 0.35 -0.8
4,476,255 - MPMX20_04291 0.37 -0.6
4,476,268 + MPMX20_04291 0.38 -0.9
4,476,276 - MPMX20_04291 0.39 -0.3
4,476,276 - MPMX20_04291 0.39 -0.5
4,476,276 - MPMX20_04291 0.39 +0.3
4,476,338 - MPMX20_04291 0.43 +1.0
4,476,371 + MPMX20_04291 0.46 +0.2
4,476,371 + MPMX20_04291 0.46 +2.4
4,476,379 - MPMX20_04291 0.46 +0.5
4,476,379 - MPMX20_04291 0.46 +1.5
4,476,379 - MPMX20_04291 0.46 -0.4
4,476,379 - MPMX20_04291 0.46 +0.6
4,476,379 - MPMX20_04291 0.46 +1.1
4,476,379 - MPMX20_04291 0.46 -2.4
4,476,406 - MPMX20_04291 0.48 +1.4
4,476,411 - MPMX20_04291 0.49 -1.3
4,476,419 + MPMX20_04291 0.49 -0.2
4,476,508 - MPMX20_04291 0.56 +1.5
4,476,527 - MPMX20_04291 0.57 -0.8
4,476,527 - MPMX20_04291 0.57 -0.8
4,476,533 + MPMX20_04291 0.58 -2.3
4,476,533 + MPMX20_04291 0.58 -1.5
4,476,541 - MPMX20_04291 0.58 +0.6
4,476,541 - MPMX20_04291 0.58 +0.5
4,476,599 + MPMX20_04291 0.63 +0.8
4,476,599 + MPMX20_04291 0.63 +0.2
4,476,607 - MPMX20_04291 0.63 +1.4
4,476,607 - MPMX20_04291 0.63 -1.6
4,476,754 + MPMX20_04291 0.74 +2.4
4,476,778 + MPMX20_04291 0.76 +0.2
4,476,799 + MPMX20_04291 0.77 +2.0
4,476,799 + MPMX20_04291 0.77 +1.2
4,476,804 + MPMX20_04291 0.78 -0.2
4,476,812 - MPMX20_04291 0.78 +0.3
4,476,859 + MPMX20_04291 0.82 -0.1
4,477,007 + -0.6
4,477,066 - +1.3
4,477,133 + -1.2
4,477,141 - +0.4
4,477,141 - -2.1
4,477,240 + MPMX20_04292 0.19 -0.8
4,477,240 + MPMX20_04292 0.19 -0.4
4,477,240 + MPMX20_04292 0.19 +0.7
4,477,240 + MPMX20_04292 0.19 +0.4
4,477,240 + MPMX20_04292 0.19 +2.4
4,477,248 - MPMX20_04292 0.21 +0.8
4,477,248 - MPMX20_04292 0.21 +1.8
4,477,356 + MPMX20_04292 0.36 +0.7
4,477,374 - MPMX20_04292 0.38 +1.2
4,477,386 + MPMX20_04292 0.40 +1.7
4,477,434 - MPMX20_04292 0.46 +1.4
4,477,588 + MPMX20_04292 0.68 +0.9
4,477,588 + MPMX20_04292 0.68 -0.1
4,477,588 + MPMX20_04292 0.68 -0.1
4,477,593 + MPMX20_04292 0.68 -0.0
4,477,612 + MPMX20_04292 0.71 +1.0
4,477,642 - MPMX20_04292 0.75 +1.1
4,477,693 - MPMX20_04292 0.82 -0.0
4,477,695 + MPMX20_04292 0.83 +0.2
4,477,705 + MPMX20_04292 0.84 +1.4
4,477,705 + MPMX20_04292 0.84 +2.2
4,477,718 - MPMX20_04292 0.86 +0.7
4,477,718 - MPMX20_04292 0.86 +0.4
4,477,736 + MPMX20_04292 0.88 +1.3
4,477,755 + -0.4
4,477,763 - +0.8
4,477,763 - -1.6
4,477,774 + +1.4
4,477,816 + -1.2
4,477,830 + -2.4
4,477,837 - +2.4
4,477,879 + -0.4
4,477,986 + +2.8
4,477,986 + +1.8
4,477,994 - -0.1
4,477,994 - -0.3
4,477,994 - +1.8
4,477,994 - +1.4
4,477,994 - -0.0
4,477,994 - -0.6
4,477,994 - -2.1
4,478,010 - -1.0
4,478,010 - +0.1
4,478,044 - +0.7
4,478,044 - -0.2
4,478,044 - +0.1
4,478,079 + -1.7
4,478,079 + +0.3
4,478,087 - +2.4
4,478,087 - +0.1
4,478,105 + MPMX20_04293 0.11 +0.1
4,478,106 + MPMX20_04293 0.11 -0.9
4,478,113 - MPMX20_04293 0.13 +3.1
4,478,136 - MPMX20_04293 0.18 +1.4
4,478,136 - MPMX20_04293 0.18 +0.7
4,478,136 - MPMX20_04293 0.18 -2.2
4,478,150 + MPMX20_04293 0.21 -1.1
4,478,171 - MPMX20_04293 0.25 -0.2
4,478,206 + MPMX20_04293 0.32 -0.9
4,478,262 - MPMX20_04293 0.44 -0.3
4,478,264 + MPMX20_04293 0.45 -1.9
4,478,272 - MPMX20_04293 0.46 +1.4
4,478,281 + MPMX20_04293 0.48 +0.4
4,478,284 + MPMX20_04293 0.49 +2.2
4,478,284 - MPMX20_04293 0.49 +0.8
4,478,289 - MPMX20_04293 0.50 +2.4
4,478,321 + MPMX20_04293 0.57 +0.8
4,478,344 + MPMX20_04293 0.62 +2.1
4,478,352 - MPMX20_04293 0.63 +3.0
4,478,397 + MPMX20_04293 0.73 +0.6
4,478,405 - MPMX20_04293 0.74 -0.2
4,478,426 - MPMX20_04293 0.79 +1.7
4,478,426 - MPMX20_04293 0.79 +1.4
4,478,523 - -0.7
4,478,533 - -0.0
4,478,559 + -0.9
4,478,574 + +0.6
4,478,653 + +0.1
4,478,653 + -0.2
4,478,658 + +2.8
4,478,661 - +1.8
4,478,661 - -0.9
4,478,666 - -1.0
4,478,673 + +2.4
4,478,692 - -0.5
4,478,709 + -0.8
4,478,735 + -0.4
4,478,751 - -1.2
4,478,809 + +2.7

Or see this region's nucleotide sequence