Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03298

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03293 and MPMX20_03294 are separated by 258 nucleotidesMPMX20_03294 and MPMX20_03295 are separated by 41 nucleotidesMPMX20_03295 and MPMX20_03296 are separated by 29 nucleotidesMPMX20_03296 and MPMX20_03297 are separated by 4 nucleotidesMPMX20_03297 and MPMX20_03298 are separated by 49 nucleotidesMPMX20_03298 and MPMX20_03299 are separated by 68 nucleotides MPMX20_03293: MPMX20_03293 - Glutamate--tRNA ligase, at 3,464,968 to 3,466,383 _03293 MPMX20_03294: MPMX20_03294 - tRNA-Val, at 3,466,642 to 3,466,717 _03294 MPMX20_03295: MPMX20_03295 - tRNA-Val, at 3,466,759 to 3,466,834 _03295 MPMX20_03296: MPMX20_03296 - tRNA-Val, at 3,466,864 to 3,466,939 _03296 MPMX20_03297: MPMX20_03297 - tRNA-Lys, at 3,466,944 to 3,467,019 _03297 MPMX20_03298: MPMX20_03298 - Hca operon transcriptional activator HcaR, at 3,467,069 to 3,467,956 _03298 MPMX20_03299: MPMX20_03299 - Xanthosine permease, at 3,468,025 to 3,469,281 _03299 Position (kb) 3467 3468Strain fitness (log2 ratio) -2 -1 0 1 2at 3466.466 kb on - strandat 3466.470 kb on - strandat 3466.471 kb on + strandat 3466.471 kb on + strandat 3466.471 kb on + strandat 3466.471 kb on + strandat 3466.479 kb on - strandat 3466.479 kb on - strandat 3466.479 kb on - strandat 3466.479 kb on - strandat 3466.479 kb on - strandat 3466.493 kb on - strandat 3466.636 kb on + strandat 3466.636 kb on + strandat 3466.738 kb on + strandat 3467.020 kb on + strandat 3467.020 kb on + strandat 3467.161 kb on + strand, within MPMX20_03298at 3467.207 kb on + strand, within MPMX20_03298at 3467.392 kb on + strand, within MPMX20_03298at 3467.392 kb on + strand, within MPMX20_03298at 3467.392 kb on + strand, within MPMX20_03298at 3467.421 kb on + strand, within MPMX20_03298at 3467.429 kb on - strand, within MPMX20_03298at 3467.429 kb on - strand, within MPMX20_03298at 3467.429 kb on - strand, within MPMX20_03298at 3467.621 kb on - strand, within MPMX20_03298at 3467.632 kb on + strand, within MPMX20_03298at 3467.638 kb on - strand, within MPMX20_03298at 3467.670 kb on + strand, within MPMX20_03298at 3467.670 kb on + strand, within MPMX20_03298at 3467.670 kb on + strand, within MPMX20_03298at 3467.678 kb on - strand, within MPMX20_03298at 3467.678 kb on - strand, within MPMX20_03298at 3467.678 kb on - strand, within MPMX20_03298at 3467.728 kb on - strand, within MPMX20_03298at 3467.765 kb on + strand, within MPMX20_03298at 3467.765 kb on + strand, within MPMX20_03298at 3467.765 kb on + strand, within MPMX20_03298at 3467.765 kb on + strand, within MPMX20_03298at 3467.773 kb on - strand, within MPMX20_03298at 3467.805 kb on + strand, within MPMX20_03298at 3467.813 kb on - strand, within MPMX20_03298at 3467.825 kb on - strand, within MPMX20_03298at 3467.827 kb on + strand, within MPMX20_03298at 3467.933 kb on - strandat 3467.934 kb on - strandat 3467.959 kb on + strandat 3467.968 kb on - strandat 3467.972 kb on + strandat 3467.980 kb on + strandat 3467.992 kb on + strandat 3467.992 kb on + strandat 3468.000 kb on - strandat 3468.000 kb on - strandat 3468.000 kb on - strandat 3468.187 kb on + strand, within MPMX20_03299at 3468.187 kb on + strand, within MPMX20_03299at 3468.187 kb on + strand, within MPMX20_03299at 3468.195 kb on - strand, within MPMX20_03299at 3468.195 kb on - strand, within MPMX20_03299at 3468.195 kb on - strand, within MPMX20_03299at 3468.238 kb on - strand, within MPMX20_03299at 3468.248 kb on - strand, within MPMX20_03299at 3468.248 kb on - strand, within MPMX20_03299at 3468.326 kb on + strand, within MPMX20_03299at 3468.334 kb on - strand, within MPMX20_03299at 3468.336 kb on + strand, within MPMX20_03299at 3468.362 kb on - strand, within MPMX20_03299at 3468.393 kb on + strand, within MPMX20_03299at 3468.406 kb on + strand, within MPMX20_03299at 3468.414 kb on - strand, within MPMX20_03299at 3468.489 kb on + strand, within MPMX20_03299at 3468.489 kb on + strand, within MPMX20_03299at 3468.489 kb on + strand, within MPMX20_03299at 3468.497 kb on - strand, within MPMX20_03299at 3468.497 kb on - strand, within MPMX20_03299at 3468.497 kb on - strand, within MPMX20_03299at 3468.521 kb on + strand, within MPMX20_03299at 3468.617 kb on + strand, within MPMX20_03299at 3468.625 kb on - strand, within MPMX20_03299at 3468.656 kb on - strand, within MPMX20_03299at 3468.671 kb on - strand, within MPMX20_03299at 3468.695 kb on - strand, within MPMX20_03299at 3468.716 kb on + strand, within MPMX20_03299at 3468.724 kb on - strand, within MPMX20_03299at 3468.760 kb on - strand, within MPMX20_03299at 3468.813 kb on + strand, within MPMX20_03299at 3468.821 kb on - strand, within MPMX20_03299at 3468.831 kb on - strand, within MPMX20_03299at 3468.901 kb on + strand, within MPMX20_03299at 3468.909 kb on - strand, within MPMX20_03299at 3468.909 kb on - strand, within MPMX20_03299at 3468.909 kb on - strand, within MPMX20_03299at 3468.923 kb on - strand, within MPMX20_03299at 3468.923 kb on - strand, within MPMX20_03299

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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3,466,466 - -0.1
3,466,470 - -0.1
3,466,471 + +1.0
3,466,471 + -0.1
3,466,471 + +0.1
3,466,471 + +1.3
3,466,479 - -1.8
3,466,479 - +0.2
3,466,479 - +1.7
3,466,479 - -1.2
3,466,479 - +0.4
3,466,493 - -0.4
3,466,636 + +0.5
3,466,636 + -0.1
3,466,738 + -0.7
3,467,020 + -0.8
3,467,020 + -0.5
3,467,161 + MPMX20_03298 0.10 +0.7
3,467,207 + MPMX20_03298 0.16 -0.6
3,467,392 + MPMX20_03298 0.36 -1.1
3,467,392 + MPMX20_03298 0.36 -0.4
3,467,392 + MPMX20_03298 0.36 +1.8
3,467,421 + MPMX20_03298 0.40 +0.3
3,467,429 - MPMX20_03298 0.41 -1.7
3,467,429 - MPMX20_03298 0.41 +1.5
3,467,429 - MPMX20_03298 0.41 -0.3
3,467,621 - MPMX20_03298 0.62 -0.9
3,467,632 + MPMX20_03298 0.63 +0.9
3,467,638 - MPMX20_03298 0.64 +0.3
3,467,670 + MPMX20_03298 0.68 +0.8
3,467,670 + MPMX20_03298 0.68 +1.9
3,467,670 + MPMX20_03298 0.68 -0.4
3,467,678 - MPMX20_03298 0.69 +0.3
3,467,678 - MPMX20_03298 0.69 +0.3
3,467,678 - MPMX20_03298 0.69 -0.5
3,467,728 - MPMX20_03298 0.74 -1.5
3,467,765 + MPMX20_03298 0.78 -0.1
3,467,765 + MPMX20_03298 0.78 -0.2
3,467,765 + MPMX20_03298 0.78 +0.8
3,467,765 + MPMX20_03298 0.78 +2.5
3,467,773 - MPMX20_03298 0.79 +0.6
3,467,805 + MPMX20_03298 0.83 -1.6
3,467,813 - MPMX20_03298 0.84 -1.0
3,467,825 - MPMX20_03298 0.85 -0.4
3,467,827 + MPMX20_03298 0.85 -0.6
3,467,933 - -1.3
3,467,934 - +0.6
3,467,959 + -0.8
3,467,968 - -0.0
3,467,972 + -0.3
3,467,980 + -0.5
3,467,992 + -1.3
3,467,992 + +0.1
3,468,000 - +0.7
3,468,000 - -0.5
3,468,000 - -1.1
3,468,187 + MPMX20_03299 0.13 -1.0
3,468,187 + MPMX20_03299 0.13 -1.0
3,468,187 + MPMX20_03299 0.13 +1.7
3,468,195 - MPMX20_03299 0.14 -0.3
3,468,195 - MPMX20_03299 0.14 -0.1
3,468,195 - MPMX20_03299 0.14 +0.1
3,468,238 - MPMX20_03299 0.17 -0.3
3,468,248 - MPMX20_03299 0.18 -0.9
3,468,248 - MPMX20_03299 0.18 -1.4
3,468,326 + MPMX20_03299 0.24 -2.1
3,468,334 - MPMX20_03299 0.25 -1.4
3,468,336 + MPMX20_03299 0.25 -0.6
3,468,362 - MPMX20_03299 0.27 -1.5
3,468,393 + MPMX20_03299 0.29 -0.7
3,468,406 + MPMX20_03299 0.30 -0.8
3,468,414 - MPMX20_03299 0.31 -0.1
3,468,489 + MPMX20_03299 0.37 +0.7
3,468,489 + MPMX20_03299 0.37 -1.9
3,468,489 + MPMX20_03299 0.37 -1.2
3,468,497 - MPMX20_03299 0.38 -0.4
3,468,497 - MPMX20_03299 0.38 -2.4
3,468,497 - MPMX20_03299 0.38 +1.1
3,468,521 + MPMX20_03299 0.39 -1.1
3,468,617 + MPMX20_03299 0.47 -1.2
3,468,625 - MPMX20_03299 0.48 +0.3
3,468,656 - MPMX20_03299 0.50 +1.3
3,468,671 - MPMX20_03299 0.51 -0.7
3,468,695 - MPMX20_03299 0.53 -1.4
3,468,716 + MPMX20_03299 0.55 +1.9
3,468,724 - MPMX20_03299 0.56 -2.1
3,468,760 - MPMX20_03299 0.58 +0.3
3,468,813 + MPMX20_03299 0.63 -1.3
3,468,821 - MPMX20_03299 0.63 +0.5
3,468,831 - MPMX20_03299 0.64 +0.4
3,468,901 + MPMX20_03299 0.70 +0.6
3,468,909 - MPMX20_03299 0.70 -0.5
3,468,909 - MPMX20_03299 0.70 -0.1
3,468,909 - MPMX20_03299 0.70 -0.6
3,468,923 - MPMX20_03299 0.71 -0.4
3,468,923 - MPMX20_03299 0.71 -0.3

Or see this region's nucleotide sequence