Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03227 and MPMX20_03228 are separated by 44 nucleotides MPMX20_03228 and MPMX20_03229 overlap by 8 nucleotides MPMX20_03229 and MPMX20_03230 overlap by 4 nucleotides
MPMX20_03227: MPMX20_03227 - Phosphate acetyltransferase, at 3,399,730 to 3,401,871
_03227
MPMX20_03228: MPMX20_03228 - Apulose-4-phosphate transketolase subunit B, at 3,401,916 to 3,402,869
_03228
MPMX20_03229: MPMX20_03229 - Apulose-4-phosphate transketolase subunit A, at 3,402,862 to 3,403,692
_03229
MPMX20_03230: MPMX20_03230 - Ascorbate-specific PTS system EIIC component, at 3,403,689 to 3,405,080
_03230
Position (kb)
3402
3403
3404 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 3401.866 kb on + strand at 3401.875 kb on - strand at 3401.883 kb on + strand at 3401.989 kb on + strand at 3401.997 kb on - strand at 3401.997 kb on - strand at 3401.997 kb on - strand at 3402.009 kb on - strand at 3402.011 kb on + strand at 3402.011 kb on + strand at 3402.019 kb on - strand, within MPMX20_03228 at 3402.035 kb on + strand, within MPMX20_03228 at 3402.045 kb on + strand, within MPMX20_03228 at 3402.045 kb on + strand, within MPMX20_03228 at 3402.056 kb on + strand, within MPMX20_03228 at 3402.078 kb on - strand, within MPMX20_03228 at 3402.108 kb on + strand, within MPMX20_03228 at 3402.164 kb on + strand, within MPMX20_03228 at 3402.164 kb on + strand, within MPMX20_03228 at 3402.207 kb on - strand, within MPMX20_03228 at 3402.253 kb on - strand, within MPMX20_03228 at 3402.308 kb on + strand, within MPMX20_03228 at 3402.337 kb on + strand, within MPMX20_03228 at 3402.345 kb on - strand, within MPMX20_03228 at 3402.377 kb on - strand, within MPMX20_03228 at 3402.391 kb on + strand, within MPMX20_03228 at 3402.440 kb on - strand, within MPMX20_03228 at 3402.458 kb on - strand, within MPMX20_03228 at 3402.485 kb on + strand, within MPMX20_03228 at 3402.539 kb on + strand, within MPMX20_03228 at 3402.547 kb on + strand, within MPMX20_03228 at 3402.570 kb on + strand, within MPMX20_03228 at 3402.589 kb on - strand, within MPMX20_03228 at 3402.615 kb on + strand, within MPMX20_03228 at 3402.629 kb on + strand, within MPMX20_03228 at 3402.737 kb on + strand, within MPMX20_03228 at 3402.737 kb on + strand, within MPMX20_03228 at 3402.752 kb on + strand, within MPMX20_03228 at 3402.755 kb on - strand, within MPMX20_03228 at 3402.755 kb on - strand, within MPMX20_03228 at 3402.799 kb on + strand at 3402.833 kb on - strand at 3402.840 kb on + strand at 3402.848 kb on - strand at 3402.908 kb on + strand at 3402.996 kb on - strand, within MPMX20_03229 at 3403.067 kb on + strand, within MPMX20_03229 at 3403.091 kb on - strand, within MPMX20_03229 at 3403.137 kb on - strand, within MPMX20_03229 at 3403.206 kb on + strand, within MPMX20_03229 at 3403.226 kb on + strand, within MPMX20_03229 at 3403.226 kb on + strand, within MPMX20_03229 at 3403.231 kb on + strand, within MPMX20_03229 at 3403.232 kb on - strand, within MPMX20_03229 at 3403.236 kb on + strand, within MPMX20_03229 at 3403.296 kb on + strand, within MPMX20_03229 at 3403.359 kb on + strand, within MPMX20_03229 at 3403.359 kb on + strand, within MPMX20_03229 at 3403.359 kb on + strand, within MPMX20_03229 at 3403.367 kb on - strand, within MPMX20_03229 at 3403.424 kb on - strand, within MPMX20_03229 at 3403.466 kb on + strand, within MPMX20_03229 at 3403.466 kb on + strand, within MPMX20_03229 at 3403.466 kb on + strand, within MPMX20_03229 at 3403.466 kb on + strand, within MPMX20_03229 at 3403.474 kb on - strand, within MPMX20_03229 at 3403.474 kb on - strand, within MPMX20_03229 at 3403.474 kb on - strand, within MPMX20_03229 at 3403.474 kb on - strand, within MPMX20_03229 at 3403.474 kb on - strand, within MPMX20_03229 at 3403.518 kb on + strand, within MPMX20_03229 at 3403.523 kb on + strand, within MPMX20_03229 at 3403.523 kb on + strand, within MPMX20_03229 at 3403.526 kb on - strand, within MPMX20_03229 at 3403.564 kb on + strand, within MPMX20_03229 at 3403.624 kb on - strand at 3403.699 kb on + strand at 3403.752 kb on + strand at 3403.784 kb on + strand at 3403.833 kb on - strand, within MPMX20_03230 at 3403.839 kb on + strand, within MPMX20_03230 at 3403.865 kb on - strand, within MPMX20_03230 at 3403.938 kb on - strand, within MPMX20_03230 at 3404.033 kb on - strand, within MPMX20_03230 at 3404.071 kb on + strand, within MPMX20_03230 at 3404.071 kb on + strand, within MPMX20_03230 at 3404.079 kb on - strand, within MPMX20_03230 at 3404.091 kb on - strand, within MPMX20_03230 at 3404.158 kb on - strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.160 kb on + strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.168 kb on - strand, within MPMX20_03230 at 3404.213 kb on - strand, within MPMX20_03230 at 3404.232 kb on + strand, within MPMX20_03230 at 3404.277 kb on + strand, within MPMX20_03230 at 3404.284 kb on + strand, within MPMX20_03230 at 3404.300 kb on + strand, within MPMX20_03230 at 3404.310 kb on + strand, within MPMX20_03230 at 3404.313 kb on - strand, within MPMX20_03230 at 3404.322 kb on + strand, within MPMX20_03230 at 3404.328 kb on - strand, within MPMX20_03230 at 3404.333 kb on + strand, within MPMX20_03230 at 3404.353 kb on + strand, within MPMX20_03230 at 3404.375 kb on - strand, within MPMX20_03230 at 3404.402 kb on + strand, within MPMX20_03230 at 3404.402 kb on + strand, within MPMX20_03230 at 3404.410 kb on - strand, within MPMX20_03230 at 3404.432 kb on - strand, within MPMX20_03230 at 3404.432 kb on - strand, within MPMX20_03230 at 3404.467 kb on - strand, within MPMX20_03230 at 3404.480 kb on - strand, within MPMX20_03230 at 3404.523 kb on - strand, within MPMX20_03230 at 3404.523 kb on - strand, within MPMX20_03230 at 3404.523 kb on - strand, within MPMX20_03230 at 3404.523 kb on - strand, within MPMX20_03230 at 3404.523 kb on - strand, within MPMX20_03230 at 3404.563 kb on + strand, within MPMX20_03230 at 3404.563 kb on + strand, within MPMX20_03230 at 3404.563 kb on + strand, within MPMX20_03230 at 3404.563 kb on + strand, within MPMX20_03230 at 3404.563 kb on + strand, within MPMX20_03230 at 3404.563 kb on + strand, within MPMX20_03230 at 3404.563 kb on + strand, within MPMX20_03230 at 3404.563 kb on + strand, within MPMX20_03230 at 3404.571 kb on - strand, within MPMX20_03230 at 3404.571 kb on - strand, within MPMX20_03230 at 3404.571 kb on - strand, within MPMX20_03230 at 3404.571 kb on - strand, within MPMX20_03230 at 3404.571 kb on - strand, within MPMX20_03230 at 3404.571 kb on - strand, within MPMX20_03230 at 3404.609 kb on + strand, within MPMX20_03230 at 3404.623 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.628 kb on + strand, within MPMX20_03230 at 3404.636 kb on - strand, within MPMX20_03230 at 3404.636 kb on - strand, within MPMX20_03230 at 3404.636 kb on - strand, within MPMX20_03230 at 3404.636 kb on - strand, within MPMX20_03230 at 3404.636 kb on - strand, within MPMX20_03230 at 3404.636 kb on - strand, within MPMX20_03230 at 3404.636 kb on - strand, within MPMX20_03230 at 3404.641 kb on + strand, within MPMX20_03230 at 3404.641 kb on + strand, within MPMX20_03230 at 3404.657 kb on + strand, within MPMX20_03230 at 3404.659 kb on + strand, within MPMX20_03230 at 3404.661 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.663 kb on + strand, within MPMX20_03230 at 3404.665 kb on - strand, within MPMX20_03230 at 3404.669 kb on + strand, within MPMX20_03230 at 3404.669 kb on - strand, within MPMX20_03230 at 3404.671 kb on - strand, within MPMX20_03230 at 3404.671 kb on - strand, within MPMX20_03230 at 3404.671 kb on - strand, within MPMX20_03230 at 3404.671 kb on - strand, within MPMX20_03230 at 3404.672 kb on + strand, within MPMX20_03230 at 3404.674 kb on + strand, within MPMX20_03230 at 3404.676 kb on + strand, within MPMX20_03230 at 3404.687 kb on + strand, within MPMX20_03230 at 3404.688 kb on + strand, within MPMX20_03230
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 3,401,866 + -0.2 3,401,875 - +0.1 3,401,883 + +4.2 3,401,989 + -0.2 3,401,997 - +1.2 3,401,997 - +1.6 3,401,997 - -0.8 3,402,009 - -0.4 3,402,011 + -0.3 3,402,011 + +1.1 3,402,019 - MPMX20_03228 0.11 +0.6 3,402,035 + MPMX20_03228 0.12 -0.4 3,402,045 + MPMX20_03228 0.14 -1.9 3,402,045 + MPMX20_03228 0.14 -0.8 3,402,056 + MPMX20_03228 0.15 -0.2 3,402,078 - MPMX20_03228 0.17 -0.3 3,402,108 + MPMX20_03228 0.20 +0.3 3,402,164 + MPMX20_03228 0.26 +0.5 3,402,164 + MPMX20_03228 0.26 +1.0 3,402,207 - MPMX20_03228 0.31 +3.6 3,402,253 - MPMX20_03228 0.35 +2.2 3,402,308 + MPMX20_03228 0.41 -1.0 3,402,337 + MPMX20_03228 0.44 -0.2 3,402,345 - MPMX20_03228 0.45 +0.8 3,402,377 - MPMX20_03228 0.48 +1.2 3,402,391 + MPMX20_03228 0.50 +0.1 3,402,440 - MPMX20_03228 0.55 +1.5 3,402,458 - MPMX20_03228 0.57 +1.6 3,402,485 + MPMX20_03228 0.60 -0.4 3,402,539 + MPMX20_03228 0.65 +0.1 3,402,547 + MPMX20_03228 0.66 +0.8 3,402,570 + MPMX20_03228 0.69 -0.6 3,402,589 - MPMX20_03228 0.71 -0.9 3,402,615 + MPMX20_03228 0.73 -0.1 3,402,629 + MPMX20_03228 0.75 +0.4 3,402,737 + MPMX20_03228 0.86 +0.2 3,402,737 + MPMX20_03228 0.86 +0.2 3,402,752 + MPMX20_03228 0.88 +0.0 3,402,755 - MPMX20_03228 0.88 +0.1 3,402,755 - MPMX20_03228 0.88 +0.6 3,402,799 + -0.8 3,402,833 - -0.8 3,402,840 + -0.6 3,402,848 - -2.0 3,402,908 + +2.2 3,402,996 - MPMX20_03229 0.16 -0.6 3,403,067 + MPMX20_03229 0.25 -2.3 3,403,091 - MPMX20_03229 0.28 +4.2 3,403,137 - MPMX20_03229 0.33 +0.3 3,403,206 + MPMX20_03229 0.41 +0.6 3,403,226 + MPMX20_03229 0.44 -2.7 3,403,226 + MPMX20_03229 0.44 -1.7 3,403,231 + MPMX20_03229 0.44 -1.1 3,403,232 - MPMX20_03229 0.45 +0.0 3,403,236 + MPMX20_03229 0.45 -0.2 3,403,296 + MPMX20_03229 0.52 +0.3 3,403,359 + MPMX20_03229 0.60 -1.1 3,403,359 + MPMX20_03229 0.60 +0.1 3,403,359 + MPMX20_03229 0.60 -0.5 3,403,367 - MPMX20_03229 0.61 +0.4 3,403,424 - MPMX20_03229 0.68 -0.5 3,403,466 + MPMX20_03229 0.73 -0.2 3,403,466 + MPMX20_03229 0.73 -0.3 3,403,466 + MPMX20_03229 0.73 -0.5 3,403,466 + MPMX20_03229 0.73 +0.6 3,403,474 - MPMX20_03229 0.74 -2.4 3,403,474 - MPMX20_03229 0.74 -1.6 3,403,474 - MPMX20_03229 0.74 -0.3 3,403,474 - MPMX20_03229 0.74 +1.6 3,403,474 - MPMX20_03229 0.74 -0.5 3,403,518 + MPMX20_03229 0.79 -0.2 3,403,523 + MPMX20_03229 0.80 +1.8 3,403,523 + MPMX20_03229 0.80 -1.4 3,403,526 - MPMX20_03229 0.80 +9.5 3,403,564 + MPMX20_03229 0.84 +2.6 3,403,624 - -0.2 3,403,699 + +1.1 3,403,752 + +2.5 3,403,784 + +0.8 3,403,833 - MPMX20_03230 0.10 +0.1 3,403,839 + MPMX20_03230 0.11 +0.1 3,403,865 - MPMX20_03230 0.13 -2.0 3,403,938 - MPMX20_03230 0.18 -0.7 3,404,033 - MPMX20_03230 0.25 +0.7 3,404,071 + MPMX20_03230 0.27 -0.8 3,404,071 + MPMX20_03230 0.27 +0.3 3,404,079 - MPMX20_03230 0.28 -2.0 3,404,091 - MPMX20_03230 0.29 -1.1 3,404,158 - MPMX20_03230 0.34 +1.6 3,404,160 + MPMX20_03230 0.34 +0.3 3,404,160 + MPMX20_03230 0.34 +2.1 3,404,160 + MPMX20_03230 0.34 -1.1 3,404,160 + MPMX20_03230 0.34 +0.7 3,404,160 + MPMX20_03230 0.34 -3.0 3,404,160 + MPMX20_03230 0.34 -0.2 3,404,160 + MPMX20_03230 0.34 -1.4 3,404,160 + MPMX20_03230 0.34 -1.6 3,404,160 + MPMX20_03230 0.34 -1.2 3,404,160 + MPMX20_03230 0.34 +1.5 3,404,160 + MPMX20_03230 0.34 -1.9 3,404,168 - MPMX20_03230 0.34 +0.3 3,404,168 - MPMX20_03230 0.34 -0.1 3,404,168 - MPMX20_03230 0.34 +0.8 3,404,168 - MPMX20_03230 0.34 +1.1 3,404,168 - MPMX20_03230 0.34 +0.7 3,404,168 - MPMX20_03230 0.34 +0.4 3,404,168 - MPMX20_03230 0.34 +0.4 3,404,168 - MPMX20_03230 0.34 +0.5 3,404,168 - MPMX20_03230 0.34 -0.3 3,404,168 - MPMX20_03230 0.34 -0.5 3,404,213 - MPMX20_03230 0.38 -0.5 3,404,232 + MPMX20_03230 0.39 +0.5 3,404,277 + MPMX20_03230 0.42 +0.3 3,404,284 + MPMX20_03230 0.43 +0.4 3,404,300 + MPMX20_03230 0.44 +0.8 3,404,310 + MPMX20_03230 0.45 -0.6 3,404,313 - MPMX20_03230 0.45 -2.3 3,404,322 + MPMX20_03230 0.45 +1.1 3,404,328 - MPMX20_03230 0.46 -0.7 3,404,333 + MPMX20_03230 0.46 -0.9 3,404,353 + MPMX20_03230 0.48 -1.2 3,404,375 - MPMX20_03230 0.49 +0.6 3,404,402 + MPMX20_03230 0.51 +0.6 3,404,402 + MPMX20_03230 0.51 -0.4 3,404,410 - MPMX20_03230 0.52 -0.3 3,404,432 - MPMX20_03230 0.53 -0.2 3,404,432 - MPMX20_03230 0.53 -1.6 3,404,467 - MPMX20_03230 0.56 +0.2 3,404,480 - MPMX20_03230 0.57 +0.3 3,404,523 - MPMX20_03230 0.60 +0.1 3,404,523 - MPMX20_03230 0.60 +0.1 3,404,523 - MPMX20_03230 0.60 +1.6 3,404,523 - MPMX20_03230 0.60 +0.3 3,404,523 - MPMX20_03230 0.60 -1.4 3,404,563 + MPMX20_03230 0.63 -1.4 3,404,563 + MPMX20_03230 0.63 -0.4 3,404,563 + MPMX20_03230 0.63 -1.2 3,404,563 + MPMX20_03230 0.63 +0.1 3,404,563 + MPMX20_03230 0.63 -1.4 3,404,563 + MPMX20_03230 0.63 -1.6 3,404,563 + MPMX20_03230 0.63 +0.5 3,404,563 + MPMX20_03230 0.63 -1.0 3,404,571 - MPMX20_03230 0.63 -0.9 3,404,571 - MPMX20_03230 0.63 -1.4 3,404,571 - MPMX20_03230 0.63 -2.7 3,404,571 - MPMX20_03230 0.63 +0.5 3,404,571 - MPMX20_03230 0.63 -0.8 3,404,571 - MPMX20_03230 0.63 -0.5 3,404,609 + MPMX20_03230 0.66 -1.5 3,404,623 + MPMX20_03230 0.67 +0.1 3,404,628 + MPMX20_03230 0.67 -0.8 3,404,628 + MPMX20_03230 0.67 -0.5 3,404,628 + MPMX20_03230 0.67 +1.8 3,404,628 + MPMX20_03230 0.67 +0.8 3,404,628 + MPMX20_03230 0.67 +0.8 3,404,628 + MPMX20_03230 0.67 +2.1 3,404,628 + MPMX20_03230 0.67 +0.6 3,404,628 + MPMX20_03230 0.67 +0.1 3,404,628 + MPMX20_03230 0.67 -0.3 3,404,628 + MPMX20_03230 0.67 +1.3 3,404,628 + MPMX20_03230 0.67 -0.6 3,404,628 + MPMX20_03230 0.67 -0.1 3,404,628 + MPMX20_03230 0.67 +1.4 3,404,636 - MPMX20_03230 0.68 -1.4 3,404,636 - MPMX20_03230 0.68 +0.9 3,404,636 - MPMX20_03230 0.68 -0.4 3,404,636 - MPMX20_03230 0.68 +1.0 3,404,636 - MPMX20_03230 0.68 -0.1 3,404,636 - MPMX20_03230 0.68 -1.7 3,404,636 - MPMX20_03230 0.68 +0.9 3,404,641 + MPMX20_03230 0.68 +0.6 3,404,641 + MPMX20_03230 0.68 +1.1 3,404,657 + MPMX20_03230 0.70 -1.3 3,404,659 + MPMX20_03230 0.70 +0.3 3,404,661 + MPMX20_03230 0.70 +0.1 3,404,663 + MPMX20_03230 0.70 -0.7 3,404,663 + MPMX20_03230 0.70 -0.8 3,404,663 + MPMX20_03230 0.70 -1.6 3,404,663 + MPMX20_03230 0.70 -0.5 3,404,663 + MPMX20_03230 0.70 +0.1 3,404,663 + MPMX20_03230 0.70 -0.9 3,404,663 + MPMX20_03230 0.70 -0.2 3,404,663 + MPMX20_03230 0.70 -0.8 3,404,663 + MPMX20_03230 0.70 +0.2 3,404,663 + MPMX20_03230 0.70 -0.8 3,404,663 + MPMX20_03230 0.70 +0.5 3,404,663 + MPMX20_03230 0.70 +0.8 3,404,663 + MPMX20_03230 0.70 -1.4 3,404,665 - MPMX20_03230 0.70 -1.0 3,404,669 + MPMX20_03230 0.70 +0.1 3,404,669 - MPMX20_03230 0.70 -0.9 3,404,671 - MPMX20_03230 0.71 -0.4 3,404,671 - MPMX20_03230 0.71 -1.1 3,404,671 - MPMX20_03230 0.71 +0.6 3,404,671 - MPMX20_03230 0.71 +2.1 3,404,672 + MPMX20_03230 0.71 -2.0 3,404,674 + MPMX20_03230 0.71 -0.4 3,404,676 + MPMX20_03230 0.71 -0.8 3,404,687 + MPMX20_03230 0.72 -0.6 3,404,688 + MPMX20_03230 0.72 +0.6
Or see this region's nucleotide sequence