Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03189 and MPMX20_03190 are separated by 94 nucleotides MPMX20_03190 and MPMX20_03191 are separated by 129 nucleotides
MPMX20_03189: MPMX20_03189 - Nicotinamide-nucleotide amidohydrolase PncC, at 3,357,878 to 3,359,077
_03189
MPMX20_03190: MPMX20_03190 - hypothetical protein, at 3,359,172 to 3,359,711
_03190
MPMX20_03191: MPMX20_03191 - Sensor protein QseC, at 3,359,841 to 3,361,250
_03191
Position (kb)
3359
3360 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 3358.225 kb on + strand, within MPMX20_03189 at 3358.245 kb on + strand, within MPMX20_03189 at 3358.294 kb on - strand, within MPMX20_03189 at 3358.294 kb on - strand, within MPMX20_03189 at 3358.340 kb on + strand, within MPMX20_03189 at 3358.363 kb on + strand, within MPMX20_03189 at 3358.371 kb on - strand, within MPMX20_03189 at 3358.371 kb on - strand, within MPMX20_03189 at 3358.440 kb on - strand, within MPMX20_03189 at 3358.440 kb on - strand, within MPMX20_03189 at 3358.521 kb on - strand, within MPMX20_03189 at 3358.528 kb on + strand, within MPMX20_03189 at 3358.545 kb on + strand, within MPMX20_03189 at 3358.545 kb on + strand, within MPMX20_03189 at 3358.545 kb on + strand, within MPMX20_03189 at 3358.591 kb on - strand, within MPMX20_03189 at 3358.675 kb on - strand, within MPMX20_03189 at 3358.804 kb on + strand, within MPMX20_03189 at 3358.812 kb on - strand, within MPMX20_03189 at 3358.843 kb on - strand, within MPMX20_03189 at 3358.869 kb on + strand, within MPMX20_03189 at 3358.953 kb on + strand, within MPMX20_03189 at 3359.033 kb on + strand at 3359.052 kb on + strand at 3359.055 kb on + strand at 3359.068 kb on - strand at 3359.102 kb on + strand at 3359.170 kb on + strand at 3359.182 kb on + strand at 3359.185 kb on - strand at 3359.185 kb on - strand at 3359.256 kb on + strand, within MPMX20_03190 at 3359.256 kb on + strand, within MPMX20_03190 at 3359.508 kb on + strand, within MPMX20_03190 at 3359.508 kb on + strand, within MPMX20_03190 at 3359.508 kb on + strand, within MPMX20_03190 at 3359.516 kb on - strand, within MPMX20_03190 at 3359.519 kb on + strand, within MPMX20_03190 at 3359.581 kb on - strand, within MPMX20_03190 at 3359.617 kb on + strand, within MPMX20_03190 at 3359.622 kb on + strand, within MPMX20_03190 at 3359.622 kb on + strand, within MPMX20_03190 at 3359.625 kb on - strand, within MPMX20_03190 at 3359.625 kb on - strand, within MPMX20_03190 at 3359.676 kb on + strand at 3359.689 kb on - strand at 3359.689 kb on - strand at 3359.689 kb on - strand at 3359.758 kb on + strand at 3359.758 kb on + strand at 3359.766 kb on - strand at 3359.766 kb on - strand at 3359.766 kb on - strand at 3359.766 kb on - strand at 3359.789 kb on - strand at 3359.893 kb on - strand at 3359.936 kb on - strand at 3359.957 kb on + strand at 3360.043 kb on + strand, within MPMX20_03191 at 3360.043 kb on + strand, within MPMX20_03191 at 3360.050 kb on + strand, within MPMX20_03191 at 3360.060 kb on + strand, within MPMX20_03191 at 3360.062 kb on + strand, within MPMX20_03191 at 3360.070 kb on - strand, within MPMX20_03191 at 3360.070 kb on - strand, within MPMX20_03191 at 3360.072 kb on + strand, within MPMX20_03191 at 3360.072 kb on + strand, within MPMX20_03191 at 3360.080 kb on - strand, within MPMX20_03191 at 3360.090 kb on - strand, within MPMX20_03191 at 3360.125 kb on - strand, within MPMX20_03191 at 3360.195 kb on + strand, within MPMX20_03191 at 3360.197 kb on + strand, within MPMX20_03191 at 3360.221 kb on - strand, within MPMX20_03191 at 3360.264 kb on + strand, within MPMX20_03191 at 3360.325 kb on - strand, within MPMX20_03191 at 3360.359 kb on + strand, within MPMX20_03191 at 3360.359 kb on + strand, within MPMX20_03191 at 3360.366 kb on + strand, within MPMX20_03191 at 3360.367 kb on - strand, within MPMX20_03191 at 3360.434 kb on + strand, within MPMX20_03191 at 3360.442 kb on - strand, within MPMX20_03191 at 3360.575 kb on + strand, within MPMX20_03191 at 3360.575 kb on + strand, within MPMX20_03191 at 3360.614 kb on + strand, within MPMX20_03191 at 3360.640 kb on + strand, within MPMX20_03191
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 3,358,225 + MPMX20_03189 0.29 -1.3 3,358,245 + MPMX20_03189 0.31 -2.4 3,358,294 - MPMX20_03189 0.35 -0.1 3,358,294 - MPMX20_03189 0.35 -1.1 3,358,340 + MPMX20_03189 0.39 +1.6 3,358,363 + MPMX20_03189 0.40 -0.6 3,358,371 - MPMX20_03189 0.41 +1.3 3,358,371 - MPMX20_03189 0.41 +0.1 3,358,440 - MPMX20_03189 0.47 -0.2 3,358,440 - MPMX20_03189 0.47 +0.1 3,358,521 - MPMX20_03189 0.54 +0.1 3,358,528 + MPMX20_03189 0.54 -1.0 3,358,545 + MPMX20_03189 0.56 -0.8 3,358,545 + MPMX20_03189 0.56 +0.7 3,358,545 + MPMX20_03189 0.56 -0.0 3,358,591 - MPMX20_03189 0.59 -1.2 3,358,675 - MPMX20_03189 0.66 +0.8 3,358,804 + MPMX20_03189 0.77 +0.4 3,358,812 - MPMX20_03189 0.78 +0.5 3,358,843 - MPMX20_03189 0.80 -1.8 3,358,869 + MPMX20_03189 0.83 -0.3 3,358,953 + MPMX20_03189 0.90 +1.1 3,359,033 + +0.3 3,359,052 + +0.5 3,359,055 + -1.5 3,359,068 - +0.3 3,359,102 + +1.3 3,359,170 + +0.7 3,359,182 + +2.7 3,359,185 - +0.4 3,359,185 - -0.7 3,359,256 + MPMX20_03190 0.16 +0.2 3,359,256 + MPMX20_03190 0.16 +0.1 3,359,508 + MPMX20_03190 0.62 -0.2 3,359,508 + MPMX20_03190 0.62 +0.9 3,359,508 + MPMX20_03190 0.62 +0.7 3,359,516 - MPMX20_03190 0.64 -2.5 3,359,519 + MPMX20_03190 0.64 -1.6 3,359,581 - MPMX20_03190 0.76 -1.0 3,359,617 + MPMX20_03190 0.82 +0.1 3,359,622 + MPMX20_03190 0.83 +0.3 3,359,622 + MPMX20_03190 0.83 +0.7 3,359,625 - MPMX20_03190 0.84 -0.2 3,359,625 - MPMX20_03190 0.84 +8.4 3,359,676 + -0.1 3,359,689 - -0.5 3,359,689 - -1.3 3,359,689 - -1.7 3,359,758 + +0.0 3,359,758 + +1.2 3,359,766 - -0.6 3,359,766 - -1.6 3,359,766 - -0.3 3,359,766 - +0.1 3,359,789 - -1.7 3,359,893 - -0.3 3,359,936 - -0.8 3,359,957 + -2.3 3,360,043 + MPMX20_03191 0.14 -0.5 3,360,043 + MPMX20_03191 0.14 +2.3 3,360,050 + MPMX20_03191 0.15 -0.5 3,360,060 + MPMX20_03191 0.16 -0.6 3,360,062 + MPMX20_03191 0.16 +0.7 3,360,070 - MPMX20_03191 0.16 +2.1 3,360,070 - MPMX20_03191 0.16 -0.1 3,360,072 + MPMX20_03191 0.16 -1.5 3,360,072 + MPMX20_03191 0.16 -0.6 3,360,080 - MPMX20_03191 0.17 -0.1 3,360,090 - MPMX20_03191 0.18 +1.1 3,360,125 - MPMX20_03191 0.20 +0.7 3,360,195 + MPMX20_03191 0.25 +1.7 3,360,197 + MPMX20_03191 0.25 -0.3 3,360,221 - MPMX20_03191 0.27 -0.7 3,360,264 + MPMX20_03191 0.30 -0.1 3,360,325 - MPMX20_03191 0.34 -0.3 3,360,359 + MPMX20_03191 0.37 -1.1 3,360,359 + MPMX20_03191 0.37 -0.5 3,360,366 + MPMX20_03191 0.37 +0.1 3,360,367 - MPMX20_03191 0.37 -2.1 3,360,434 + MPMX20_03191 0.42 -1.9 3,360,442 - MPMX20_03191 0.43 -1.8 3,360,575 + MPMX20_03191 0.52 -0.3 3,360,575 + MPMX20_03191 0.52 -2.6 3,360,614 + MPMX20_03191 0.55 +0.2 3,360,640 + MPMX20_03191 0.57 +0.1
Or see this region's nucleotide sequence