Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03190

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03189 and MPMX20_03190 are separated by 94 nucleotidesMPMX20_03190 and MPMX20_03191 are separated by 129 nucleotides MPMX20_03189: MPMX20_03189 - Nicotinamide-nucleotide amidohydrolase PncC, at 3,357,878 to 3,359,077 _03189 MPMX20_03190: MPMX20_03190 - hypothetical protein, at 3,359,172 to 3,359,711 _03190 MPMX20_03191: MPMX20_03191 - Sensor protein QseC, at 3,359,841 to 3,361,250 _03191 Position (kb) 3359 3360Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 3358.225 kb on + strand, within MPMX20_03189at 3358.245 kb on + strand, within MPMX20_03189at 3358.294 kb on - strand, within MPMX20_03189at 3358.294 kb on - strand, within MPMX20_03189at 3358.340 kb on + strand, within MPMX20_03189at 3358.363 kb on + strand, within MPMX20_03189at 3358.371 kb on - strand, within MPMX20_03189at 3358.371 kb on - strand, within MPMX20_03189at 3358.440 kb on - strand, within MPMX20_03189at 3358.440 kb on - strand, within MPMX20_03189at 3358.521 kb on - strand, within MPMX20_03189at 3358.528 kb on + strand, within MPMX20_03189at 3358.545 kb on + strand, within MPMX20_03189at 3358.545 kb on + strand, within MPMX20_03189at 3358.545 kb on + strand, within MPMX20_03189at 3358.591 kb on - strand, within MPMX20_03189at 3358.675 kb on - strand, within MPMX20_03189at 3358.804 kb on + strand, within MPMX20_03189at 3358.812 kb on - strand, within MPMX20_03189at 3358.843 kb on - strand, within MPMX20_03189at 3358.869 kb on + strand, within MPMX20_03189at 3358.953 kb on + strand, within MPMX20_03189at 3359.033 kb on + strandat 3359.052 kb on + strandat 3359.055 kb on + strandat 3359.068 kb on - strandat 3359.102 kb on + strandat 3359.170 kb on + strandat 3359.182 kb on + strandat 3359.185 kb on - strandat 3359.185 kb on - strandat 3359.256 kb on + strand, within MPMX20_03190at 3359.256 kb on + strand, within MPMX20_03190at 3359.508 kb on + strand, within MPMX20_03190at 3359.508 kb on + strand, within MPMX20_03190at 3359.508 kb on + strand, within MPMX20_03190at 3359.516 kb on - strand, within MPMX20_03190at 3359.519 kb on + strand, within MPMX20_03190at 3359.581 kb on - strand, within MPMX20_03190at 3359.617 kb on + strand, within MPMX20_03190at 3359.622 kb on + strand, within MPMX20_03190at 3359.622 kb on + strand, within MPMX20_03190at 3359.625 kb on - strand, within MPMX20_03190at 3359.625 kb on - strand, within MPMX20_03190at 3359.676 kb on + strandat 3359.689 kb on - strandat 3359.689 kb on - strandat 3359.689 kb on - strandat 3359.758 kb on + strandat 3359.758 kb on + strandat 3359.766 kb on - strandat 3359.766 kb on - strandat 3359.766 kb on - strandat 3359.766 kb on - strandat 3359.789 kb on - strandat 3359.893 kb on - strandat 3359.936 kb on - strandat 3359.957 kb on + strandat 3360.043 kb on + strand, within MPMX20_03191at 3360.043 kb on + strand, within MPMX20_03191at 3360.050 kb on + strand, within MPMX20_03191at 3360.060 kb on + strand, within MPMX20_03191at 3360.062 kb on + strand, within MPMX20_03191at 3360.070 kb on - strand, within MPMX20_03191at 3360.070 kb on - strand, within MPMX20_03191at 3360.072 kb on + strand, within MPMX20_03191at 3360.072 kb on + strand, within MPMX20_03191at 3360.080 kb on - strand, within MPMX20_03191at 3360.090 kb on - strand, within MPMX20_03191at 3360.125 kb on - strand, within MPMX20_03191at 3360.195 kb on + strand, within MPMX20_03191at 3360.197 kb on + strand, within MPMX20_03191at 3360.221 kb on - strand, within MPMX20_03191at 3360.264 kb on + strand, within MPMX20_03191at 3360.325 kb on - strand, within MPMX20_03191at 3360.359 kb on + strand, within MPMX20_03191at 3360.359 kb on + strand, within MPMX20_03191at 3360.366 kb on + strand, within MPMX20_03191at 3360.367 kb on - strand, within MPMX20_03191at 3360.434 kb on + strand, within MPMX20_03191at 3360.442 kb on - strand, within MPMX20_03191at 3360.575 kb on + strand, within MPMX20_03191at 3360.575 kb on + strand, within MPMX20_03191at 3360.614 kb on + strand, within MPMX20_03191at 3360.640 kb on + strand, within MPMX20_03191

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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3,358,225 + MPMX20_03189 0.29 -1.3
3,358,245 + MPMX20_03189 0.31 -2.4
3,358,294 - MPMX20_03189 0.35 -0.1
3,358,294 - MPMX20_03189 0.35 -1.1
3,358,340 + MPMX20_03189 0.39 +1.6
3,358,363 + MPMX20_03189 0.40 -0.6
3,358,371 - MPMX20_03189 0.41 +1.3
3,358,371 - MPMX20_03189 0.41 +0.1
3,358,440 - MPMX20_03189 0.47 -0.2
3,358,440 - MPMX20_03189 0.47 +0.1
3,358,521 - MPMX20_03189 0.54 +0.1
3,358,528 + MPMX20_03189 0.54 -1.0
3,358,545 + MPMX20_03189 0.56 -0.8
3,358,545 + MPMX20_03189 0.56 +0.7
3,358,545 + MPMX20_03189 0.56 -0.0
3,358,591 - MPMX20_03189 0.59 -1.2
3,358,675 - MPMX20_03189 0.66 +0.8
3,358,804 + MPMX20_03189 0.77 +0.4
3,358,812 - MPMX20_03189 0.78 +0.5
3,358,843 - MPMX20_03189 0.80 -1.8
3,358,869 + MPMX20_03189 0.83 -0.3
3,358,953 + MPMX20_03189 0.90 +1.1
3,359,033 + +0.3
3,359,052 + +0.5
3,359,055 + -1.5
3,359,068 - +0.3
3,359,102 + +1.3
3,359,170 + +0.7
3,359,182 + +2.7
3,359,185 - +0.4
3,359,185 - -0.7
3,359,256 + MPMX20_03190 0.16 +0.2
3,359,256 + MPMX20_03190 0.16 +0.1
3,359,508 + MPMX20_03190 0.62 -0.2
3,359,508 + MPMX20_03190 0.62 +0.9
3,359,508 + MPMX20_03190 0.62 +0.7
3,359,516 - MPMX20_03190 0.64 -2.5
3,359,519 + MPMX20_03190 0.64 -1.6
3,359,581 - MPMX20_03190 0.76 -1.0
3,359,617 + MPMX20_03190 0.82 +0.1
3,359,622 + MPMX20_03190 0.83 +0.3
3,359,622 + MPMX20_03190 0.83 +0.7
3,359,625 - MPMX20_03190 0.84 -0.2
3,359,625 - MPMX20_03190 0.84 +8.4
3,359,676 + -0.1
3,359,689 - -0.5
3,359,689 - -1.3
3,359,689 - -1.7
3,359,758 + +0.0
3,359,758 + +1.2
3,359,766 - -0.6
3,359,766 - -1.6
3,359,766 - -0.3
3,359,766 - +0.1
3,359,789 - -1.7
3,359,893 - -0.3
3,359,936 - -0.8
3,359,957 + -2.3
3,360,043 + MPMX20_03191 0.14 -0.5
3,360,043 + MPMX20_03191 0.14 +2.3
3,360,050 + MPMX20_03191 0.15 -0.5
3,360,060 + MPMX20_03191 0.16 -0.6
3,360,062 + MPMX20_03191 0.16 +0.7
3,360,070 - MPMX20_03191 0.16 +2.1
3,360,070 - MPMX20_03191 0.16 -0.1
3,360,072 + MPMX20_03191 0.16 -1.5
3,360,072 + MPMX20_03191 0.16 -0.6
3,360,080 - MPMX20_03191 0.17 -0.1
3,360,090 - MPMX20_03191 0.18 +1.1
3,360,125 - MPMX20_03191 0.20 +0.7
3,360,195 + MPMX20_03191 0.25 +1.7
3,360,197 + MPMX20_03191 0.25 -0.3
3,360,221 - MPMX20_03191 0.27 -0.7
3,360,264 + MPMX20_03191 0.30 -0.1
3,360,325 - MPMX20_03191 0.34 -0.3
3,360,359 + MPMX20_03191 0.37 -1.1
3,360,359 + MPMX20_03191 0.37 -0.5
3,360,366 + MPMX20_03191 0.37 +0.1
3,360,367 - MPMX20_03191 0.37 -2.1
3,360,434 + MPMX20_03191 0.42 -1.9
3,360,442 - MPMX20_03191 0.43 -1.8
3,360,575 + MPMX20_03191 0.52 -0.3
3,360,575 + MPMX20_03191 0.52 -2.6
3,360,614 + MPMX20_03191 0.55 +0.2
3,360,640 + MPMX20_03191 0.57 +0.1

Or see this region's nucleotide sequence