Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03098 and MPMX20_03099 are separated by 12 nucleotides MPMX20_03099 and MPMX20_03100 are separated by 146 nucleotides
MPMX20_03098: MPMX20_03098 - Glycine betaine uptake system permease protein YehY, at 3,250,065 to 3,251,222
_03098
MPMX20_03099: MPMX20_03099 - Glycine betaine-binding protein YehZ, at 3,251,235 to 3,252,152
_03099
MPMX20_03100: MPMX20_03100 - Beta-xylosidase, at 3,252,299 to 3,254,596
_03100
Position (kb)
3251
3252
3253 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3250.249 kb on - strand, within MPMX20_03098 at 3250.279 kb on - strand, within MPMX20_03098 at 3250.349 kb on - strand, within MPMX20_03098 at 3250.349 kb on - strand, within MPMX20_03098 at 3250.370 kb on + strand, within MPMX20_03098 at 3250.560 kb on + strand, within MPMX20_03098 at 3250.595 kb on - strand, within MPMX20_03098 at 3250.601 kb on - strand, within MPMX20_03098 at 3250.607 kb on + strand, within MPMX20_03098 at 3250.639 kb on - strand, within MPMX20_03098 at 3250.762 kb on - strand, within MPMX20_03098 at 3250.767 kb on - strand, within MPMX20_03098 at 3250.767 kb on - strand, within MPMX20_03098 at 3250.767 kb on - strand, within MPMX20_03098 at 3250.770 kb on - strand, within MPMX20_03098 at 3250.869 kb on - strand, within MPMX20_03098 at 3250.871 kb on + strand, within MPMX20_03098 at 3250.874 kb on - strand, within MPMX20_03098 at 3250.879 kb on - strand, within MPMX20_03098 at 3250.879 kb on - strand, within MPMX20_03098 at 3250.906 kb on + strand, within MPMX20_03098 at 3250.906 kb on - strand, within MPMX20_03098 at 3250.932 kb on + strand, within MPMX20_03098 at 3250.932 kb on + strand, within MPMX20_03098 at 3250.940 kb on - strand, within MPMX20_03098 at 3250.960 kb on + strand, within MPMX20_03098 at 3250.977 kb on + strand, within MPMX20_03098 at 3250.995 kb on - strand, within MPMX20_03098 at 3251.010 kb on - strand, within MPMX20_03098 at 3251.094 kb on + strand, within MPMX20_03098 at 3251.094 kb on - strand, within MPMX20_03098 at 3251.224 kb on + strand at 3251.227 kb on - strand at 3251.356 kb on + strand, within MPMX20_03099 at 3251.364 kb on - strand, within MPMX20_03099 at 3251.364 kb on - strand, within MPMX20_03099 at 3251.386 kb on + strand, within MPMX20_03099 at 3251.411 kb on - strand, within MPMX20_03099 at 3251.571 kb on - strand, within MPMX20_03099 at 3251.723 kb on + strand, within MPMX20_03099 at 3251.731 kb on - strand, within MPMX20_03099 at 3251.736 kb on - strand, within MPMX20_03099 at 3251.799 kb on - strand, within MPMX20_03099 at 3251.954 kb on + strand, within MPMX20_03099 at 3251.954 kb on + strand, within MPMX20_03099 at 3251.960 kb on - strand, within MPMX20_03099 at 3252.027 kb on - strand, within MPMX20_03099 at 3252.085 kb on - strand at 3252.085 kb on - strand at 3252.109 kb on + strand at 3252.111 kb on + strand at 3252.252 kb on + strand at 3252.260 kb on - strand at 3252.260 kb on - strand at 3252.281 kb on + strand at 3252.289 kb on - strand at 3252.297 kb on + strand at 3252.297 kb on + strand at 3252.297 kb on + strand at 3252.297 kb on + strand at 3252.297 kb on + strand at 3252.297 kb on + strand at 3252.297 kb on + strand at 3252.305 kb on - strand at 3252.305 kb on - strand at 3252.305 kb on - strand at 3252.305 kb on - strand at 3252.305 kb on - strand at 3252.305 kb on - strand at 3252.305 kb on - strand at 3252.305 kb on - strand at 3252.389 kb on - strand at 3252.525 kb on - strand at 3252.533 kb on - strand, within MPMX20_03100 at 3252.541 kb on + strand, within MPMX20_03100 at 3252.564 kb on + strand, within MPMX20_03100 at 3252.582 kb on - strand, within MPMX20_03100 at 3252.640 kb on + strand, within MPMX20_03100 at 3252.656 kb on + strand, within MPMX20_03100 at 3252.664 kb on - strand, within MPMX20_03100 at 3252.669 kb on - strand, within MPMX20_03100 at 3252.753 kb on + strand, within MPMX20_03100 at 3252.790 kb on - strand, within MPMX20_03100 at 3252.871 kb on + strand, within MPMX20_03100 at 3252.881 kb on - strand, within MPMX20_03100 at 3252.913 kb on + strand, within MPMX20_03100 at 3252.918 kb on + strand, within MPMX20_03100 at 3252.918 kb on + strand, within MPMX20_03100 at 3252.918 kb on + strand, within MPMX20_03100 at 3252.918 kb on + strand, within MPMX20_03100 at 3252.926 kb on - strand, within MPMX20_03100 at 3253.009 kb on - strand, within MPMX20_03100 at 3253.058 kb on - strand, within MPMX20_03100 at 3253.096 kb on + strand, within MPMX20_03100 at 3253.096 kb on + strand, within MPMX20_03100 at 3253.114 kb on - strand, within MPMX20_03100
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 3,250,249 - MPMX20_03098 0.16 -1.6 3,250,279 - MPMX20_03098 0.18 -0.2 3,250,349 - MPMX20_03098 0.25 +0.2 3,250,349 - MPMX20_03098 0.25 +0.1 3,250,370 + MPMX20_03098 0.26 -0.7 3,250,560 + MPMX20_03098 0.43 -0.0 3,250,595 - MPMX20_03098 0.46 +0.1 3,250,601 - MPMX20_03098 0.46 -0.3 3,250,607 + MPMX20_03098 0.47 -0.2 3,250,639 - MPMX20_03098 0.50 +0.4 3,250,762 - MPMX20_03098 0.60 +0.5 3,250,767 - MPMX20_03098 0.61 -0.2 3,250,767 - MPMX20_03098 0.61 +1.4 3,250,767 - MPMX20_03098 0.61 -1.2 3,250,770 - MPMX20_03098 0.61 +0.5 3,250,869 - MPMX20_03098 0.69 +0.7 3,250,871 + MPMX20_03098 0.70 -0.6 3,250,874 - MPMX20_03098 0.70 +0.8 3,250,879 - MPMX20_03098 0.70 -0.1 3,250,879 - MPMX20_03098 0.70 -0.1 3,250,906 + MPMX20_03098 0.73 +0.4 3,250,906 - MPMX20_03098 0.73 -1.2 3,250,932 + MPMX20_03098 0.75 -2.5 3,250,932 + MPMX20_03098 0.75 -2.1 3,250,940 - MPMX20_03098 0.76 -1.4 3,250,960 + MPMX20_03098 0.77 -0.5 3,250,977 + MPMX20_03098 0.79 -0.8 3,250,995 - MPMX20_03098 0.80 -0.1 3,251,010 - MPMX20_03098 0.82 -1.8 3,251,094 + MPMX20_03098 0.89 -1.5 3,251,094 - MPMX20_03098 0.89 -0.7 3,251,224 + -0.6 3,251,227 - -0.2 3,251,356 + MPMX20_03099 0.13 +0.8 3,251,364 - MPMX20_03099 0.14 -0.6 3,251,364 - MPMX20_03099 0.14 +0.5 3,251,386 + MPMX20_03099 0.16 +3.7 3,251,411 - MPMX20_03099 0.19 +0.7 3,251,571 - MPMX20_03099 0.37 -1.0 3,251,723 + MPMX20_03099 0.53 +1.4 3,251,731 - MPMX20_03099 0.54 +0.1 3,251,736 - MPMX20_03099 0.55 +0.2 3,251,799 - MPMX20_03099 0.61 -1.2 3,251,954 + MPMX20_03099 0.78 -0.3 3,251,954 + MPMX20_03099 0.78 +2.8 3,251,960 - MPMX20_03099 0.79 +1.1 3,252,027 - MPMX20_03099 0.86 +0.8 3,252,085 - -1.5 3,252,085 - -0.8 3,252,109 + +0.4 3,252,111 + -0.1 3,252,252 + -1.0 3,252,260 - +0.1 3,252,260 - -1.8 3,252,281 + -1.2 3,252,289 - -0.6 3,252,297 + -0.9 3,252,297 + -0.1 3,252,297 + +0.0 3,252,297 + +0.1 3,252,297 + -0.8 3,252,297 + -0.5 3,252,297 + +0.2 3,252,305 - -0.2 3,252,305 - +0.4 3,252,305 - -1.6 3,252,305 - +1.9 3,252,305 - +0.9 3,252,305 - -1.9 3,252,305 - +0.0 3,252,305 - -0.7 3,252,389 - +0.0 3,252,525 - +1.0 3,252,533 - MPMX20_03100 0.10 -0.3 3,252,541 + MPMX20_03100 0.11 +0.3 3,252,564 + MPMX20_03100 0.12 +0.5 3,252,582 - MPMX20_03100 0.12 -0.6 3,252,640 + MPMX20_03100 0.15 -0.6 3,252,656 + MPMX20_03100 0.16 +1.1 3,252,664 - MPMX20_03100 0.16 -0.5 3,252,669 - MPMX20_03100 0.16 +0.4 3,252,753 + MPMX20_03100 0.20 +1.8 3,252,790 - MPMX20_03100 0.21 -0.0 3,252,871 + MPMX20_03100 0.25 -0.8 3,252,881 - MPMX20_03100 0.25 -0.1 3,252,913 + MPMX20_03100 0.27 -0.5 3,252,918 + MPMX20_03100 0.27 -2.1 3,252,918 + MPMX20_03100 0.27 -0.6 3,252,918 + MPMX20_03100 0.27 -0.4 3,252,918 + MPMX20_03100 0.27 +0.2 3,252,926 - MPMX20_03100 0.27 +0.2 3,253,009 - MPMX20_03100 0.31 +0.5 3,253,058 - MPMX20_03100 0.33 +1.7 3,253,096 + MPMX20_03100 0.35 -0.3 3,253,096 + MPMX20_03100 0.35 +2.7 3,253,114 - MPMX20_03100 0.35 -0.4
Or see this region's nucleotide sequence