Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03099

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03098 and MPMX20_03099 are separated by 12 nucleotidesMPMX20_03099 and MPMX20_03100 are separated by 146 nucleotides MPMX20_03098: MPMX20_03098 - Glycine betaine uptake system permease protein YehY, at 3,250,065 to 3,251,222 _03098 MPMX20_03099: MPMX20_03099 - Glycine betaine-binding protein YehZ, at 3,251,235 to 3,252,152 _03099 MPMX20_03100: MPMX20_03100 - Beta-xylosidase, at 3,252,299 to 3,254,596 _03100 Position (kb) 3251 3252 3253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3250.249 kb on - strand, within MPMX20_03098at 3250.279 kb on - strand, within MPMX20_03098at 3250.349 kb on - strand, within MPMX20_03098at 3250.349 kb on - strand, within MPMX20_03098at 3250.370 kb on + strand, within MPMX20_03098at 3250.560 kb on + strand, within MPMX20_03098at 3250.595 kb on - strand, within MPMX20_03098at 3250.601 kb on - strand, within MPMX20_03098at 3250.607 kb on + strand, within MPMX20_03098at 3250.639 kb on - strand, within MPMX20_03098at 3250.762 kb on - strand, within MPMX20_03098at 3250.767 kb on - strand, within MPMX20_03098at 3250.767 kb on - strand, within MPMX20_03098at 3250.767 kb on - strand, within MPMX20_03098at 3250.770 kb on - strand, within MPMX20_03098at 3250.869 kb on - strand, within MPMX20_03098at 3250.871 kb on + strand, within MPMX20_03098at 3250.874 kb on - strand, within MPMX20_03098at 3250.879 kb on - strand, within MPMX20_03098at 3250.879 kb on - strand, within MPMX20_03098at 3250.906 kb on + strand, within MPMX20_03098at 3250.906 kb on - strand, within MPMX20_03098at 3250.932 kb on + strand, within MPMX20_03098at 3250.932 kb on + strand, within MPMX20_03098at 3250.940 kb on - strand, within MPMX20_03098at 3250.960 kb on + strand, within MPMX20_03098at 3250.977 kb on + strand, within MPMX20_03098at 3250.995 kb on - strand, within MPMX20_03098at 3251.010 kb on - strand, within MPMX20_03098at 3251.094 kb on + strand, within MPMX20_03098at 3251.094 kb on - strand, within MPMX20_03098at 3251.224 kb on + strandat 3251.227 kb on - strandat 3251.356 kb on + strand, within MPMX20_03099at 3251.364 kb on - strand, within MPMX20_03099at 3251.364 kb on - strand, within MPMX20_03099at 3251.386 kb on + strand, within MPMX20_03099at 3251.411 kb on - strand, within MPMX20_03099at 3251.571 kb on - strand, within MPMX20_03099at 3251.723 kb on + strand, within MPMX20_03099at 3251.731 kb on - strand, within MPMX20_03099at 3251.736 kb on - strand, within MPMX20_03099at 3251.799 kb on - strand, within MPMX20_03099at 3251.954 kb on + strand, within MPMX20_03099at 3251.954 kb on + strand, within MPMX20_03099at 3251.960 kb on - strand, within MPMX20_03099at 3252.027 kb on - strand, within MPMX20_03099at 3252.085 kb on - strandat 3252.085 kb on - strandat 3252.109 kb on + strandat 3252.111 kb on + strandat 3252.252 kb on + strandat 3252.260 kb on - strandat 3252.260 kb on - strandat 3252.281 kb on + strandat 3252.289 kb on - strandat 3252.297 kb on + strandat 3252.297 kb on + strandat 3252.297 kb on + strandat 3252.297 kb on + strandat 3252.297 kb on + strandat 3252.297 kb on + strandat 3252.297 kb on + strandat 3252.305 kb on - strandat 3252.305 kb on - strandat 3252.305 kb on - strandat 3252.305 kb on - strandat 3252.305 kb on - strandat 3252.305 kb on - strandat 3252.305 kb on - strandat 3252.305 kb on - strandat 3252.389 kb on - strandat 3252.525 kb on - strandat 3252.533 kb on - strand, within MPMX20_03100at 3252.541 kb on + strand, within MPMX20_03100at 3252.564 kb on + strand, within MPMX20_03100at 3252.582 kb on - strand, within MPMX20_03100at 3252.640 kb on + strand, within MPMX20_03100at 3252.656 kb on + strand, within MPMX20_03100at 3252.664 kb on - strand, within MPMX20_03100at 3252.669 kb on - strand, within MPMX20_03100at 3252.753 kb on + strand, within MPMX20_03100at 3252.790 kb on - strand, within MPMX20_03100at 3252.871 kb on + strand, within MPMX20_03100at 3252.881 kb on - strand, within MPMX20_03100at 3252.913 kb on + strand, within MPMX20_03100at 3252.918 kb on + strand, within MPMX20_03100at 3252.918 kb on + strand, within MPMX20_03100at 3252.918 kb on + strand, within MPMX20_03100at 3252.918 kb on + strand, within MPMX20_03100at 3252.926 kb on - strand, within MPMX20_03100at 3253.009 kb on - strand, within MPMX20_03100at 3253.058 kb on - strand, within MPMX20_03100at 3253.096 kb on + strand, within MPMX20_03100at 3253.096 kb on + strand, within MPMX20_03100at 3253.114 kb on - strand, within MPMX20_03100

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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3,250,249 - MPMX20_03098 0.16 -1.6
3,250,279 - MPMX20_03098 0.18 -0.2
3,250,349 - MPMX20_03098 0.25 +0.2
3,250,349 - MPMX20_03098 0.25 +0.1
3,250,370 + MPMX20_03098 0.26 -0.7
3,250,560 + MPMX20_03098 0.43 -0.0
3,250,595 - MPMX20_03098 0.46 +0.1
3,250,601 - MPMX20_03098 0.46 -0.3
3,250,607 + MPMX20_03098 0.47 -0.2
3,250,639 - MPMX20_03098 0.50 +0.4
3,250,762 - MPMX20_03098 0.60 +0.5
3,250,767 - MPMX20_03098 0.61 -0.2
3,250,767 - MPMX20_03098 0.61 +1.4
3,250,767 - MPMX20_03098 0.61 -1.2
3,250,770 - MPMX20_03098 0.61 +0.5
3,250,869 - MPMX20_03098 0.69 +0.7
3,250,871 + MPMX20_03098 0.70 -0.6
3,250,874 - MPMX20_03098 0.70 +0.8
3,250,879 - MPMX20_03098 0.70 -0.1
3,250,879 - MPMX20_03098 0.70 -0.1
3,250,906 + MPMX20_03098 0.73 +0.4
3,250,906 - MPMX20_03098 0.73 -1.2
3,250,932 + MPMX20_03098 0.75 -2.5
3,250,932 + MPMX20_03098 0.75 -2.1
3,250,940 - MPMX20_03098 0.76 -1.4
3,250,960 + MPMX20_03098 0.77 -0.5
3,250,977 + MPMX20_03098 0.79 -0.8
3,250,995 - MPMX20_03098 0.80 -0.1
3,251,010 - MPMX20_03098 0.82 -1.8
3,251,094 + MPMX20_03098 0.89 -1.5
3,251,094 - MPMX20_03098 0.89 -0.7
3,251,224 + -0.6
3,251,227 - -0.2
3,251,356 + MPMX20_03099 0.13 +0.8
3,251,364 - MPMX20_03099 0.14 -0.6
3,251,364 - MPMX20_03099 0.14 +0.5
3,251,386 + MPMX20_03099 0.16 +3.7
3,251,411 - MPMX20_03099 0.19 +0.7
3,251,571 - MPMX20_03099 0.37 -1.0
3,251,723 + MPMX20_03099 0.53 +1.4
3,251,731 - MPMX20_03099 0.54 +0.1
3,251,736 - MPMX20_03099 0.55 +0.2
3,251,799 - MPMX20_03099 0.61 -1.2
3,251,954 + MPMX20_03099 0.78 -0.3
3,251,954 + MPMX20_03099 0.78 +2.8
3,251,960 - MPMX20_03099 0.79 +1.1
3,252,027 - MPMX20_03099 0.86 +0.8
3,252,085 - -1.5
3,252,085 - -0.8
3,252,109 + +0.4
3,252,111 + -0.1
3,252,252 + -1.0
3,252,260 - +0.1
3,252,260 - -1.8
3,252,281 + -1.2
3,252,289 - -0.6
3,252,297 + -0.9
3,252,297 + -0.1
3,252,297 + +0.0
3,252,297 + +0.1
3,252,297 + -0.8
3,252,297 + -0.5
3,252,297 + +0.2
3,252,305 - -0.2
3,252,305 - +0.4
3,252,305 - -1.6
3,252,305 - +1.9
3,252,305 - +0.9
3,252,305 - -1.9
3,252,305 - +0.0
3,252,305 - -0.7
3,252,389 - +0.0
3,252,525 - +1.0
3,252,533 - MPMX20_03100 0.10 -0.3
3,252,541 + MPMX20_03100 0.11 +0.3
3,252,564 + MPMX20_03100 0.12 +0.5
3,252,582 - MPMX20_03100 0.12 -0.6
3,252,640 + MPMX20_03100 0.15 -0.6
3,252,656 + MPMX20_03100 0.16 +1.1
3,252,664 - MPMX20_03100 0.16 -0.5
3,252,669 - MPMX20_03100 0.16 +0.4
3,252,753 + MPMX20_03100 0.20 +1.8
3,252,790 - MPMX20_03100 0.21 -0.0
3,252,871 + MPMX20_03100 0.25 -0.8
3,252,881 - MPMX20_03100 0.25 -0.1
3,252,913 + MPMX20_03100 0.27 -0.5
3,252,918 + MPMX20_03100 0.27 -2.1
3,252,918 + MPMX20_03100 0.27 -0.6
3,252,918 + MPMX20_03100 0.27 -0.4
3,252,918 + MPMX20_03100 0.27 +0.2
3,252,926 - MPMX20_03100 0.27 +0.2
3,253,009 - MPMX20_03100 0.31 +0.5
3,253,058 - MPMX20_03100 0.33 +1.7
3,253,096 + MPMX20_03100 0.35 -0.3
3,253,096 + MPMX20_03100 0.35 +2.7
3,253,114 - MPMX20_03100 0.35 -0.4

Or see this region's nucleotide sequence