Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03073 and MPMX20_03074 overlap by 4 nucleotides MPMX20_03074 and MPMX20_03075 overlap by 27 nucleotides MPMX20_03075 and MPMX20_03076 are separated by 42 nucleotides
MPMX20_03072: MPMX20_03072 - Putative nucleoside transporter YegT, at 3,222,036 to 3,223,313
_03072
MPMX20_03073: MPMX20_03073 - hypothetical protein, at 3,223,310 to 3,224,314
_03073
MPMX20_03074: MPMX20_03074 - Ribokinase, at 3,224,311 to 3,225,264
_03074
MPMX20_03075: MPMX20_03075 - HTH-type transcriptional repressor NagR, at 3,225,238 to 3,225,984
_03075
MPMX20_03076: MPMX20_03076 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 3,226,027 to 3,226,827
_03076
Position (kb)
3224
3225
3226 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 3223.342 kb on - strand at 3223.349 kb on + strand at 3223.349 kb on + strand at 3223.349 kb on + strand at 3223.349 kb on + strand at 3223.349 kb on + strand at 3223.349 kb on + strand at 3223.357 kb on - strand at 3223.357 kb on - strand at 3223.357 kb on - strand at 3223.357 kb on - strand at 3223.357 kb on - strand at 3223.357 kb on - strand at 3223.374 kb on + strand at 3223.374 kb on + strand at 3223.453 kb on - strand, within MPMX20_03073 at 3223.492 kb on + strand, within MPMX20_03073 at 3223.505 kb on - strand, within MPMX20_03073 at 3223.574 kb on + strand, within MPMX20_03073 at 3223.577 kb on - strand, within MPMX20_03073 at 3223.579 kb on + strand, within MPMX20_03073 at 3223.582 kb on - strand, within MPMX20_03073 at 3223.584 kb on + strand, within MPMX20_03073 at 3223.584 kb on + strand, within MPMX20_03073 at 3223.584 kb on + strand, within MPMX20_03073 at 3223.584 kb on + strand, within MPMX20_03073 at 3223.592 kb on - strand, within MPMX20_03073 at 3223.592 kb on - strand, within MPMX20_03073 at 3223.719 kb on + strand, within MPMX20_03073 at 3223.719 kb on + strand, within MPMX20_03073 at 3223.727 kb on - strand, within MPMX20_03073 at 3223.738 kb on + strand, within MPMX20_03073 at 3223.742 kb on - strand, within MPMX20_03073 at 3223.773 kb on + strand, within MPMX20_03073 at 3223.785 kb on + strand, within MPMX20_03073 at 3223.842 kb on + strand, within MPMX20_03073 at 3223.842 kb on + strand, within MPMX20_03073 at 3223.845 kb on - strand, within MPMX20_03073 at 3223.845 kb on - strand, within MPMX20_03073 at 3223.855 kb on - strand, within MPMX20_03073 at 3223.897 kb on + strand, within MPMX20_03073 at 3223.902 kb on + strand, within MPMX20_03073 at 3223.902 kb on + strand, within MPMX20_03073 at 3223.922 kb on - strand, within MPMX20_03073 at 3223.939 kb on + strand, within MPMX20_03073 at 3223.947 kb on - strand, within MPMX20_03073 at 3224.063 kb on - strand, within MPMX20_03073 at 3224.108 kb on - strand, within MPMX20_03073 at 3224.184 kb on + strand, within MPMX20_03073 at 3224.197 kb on - strand, within MPMX20_03073 at 3224.207 kb on - strand, within MPMX20_03073 at 3224.241 kb on + strand at 3224.258 kb on - strand at 3224.307 kb on + strand at 3224.339 kb on - strand at 3224.339 kb on - strand at 3224.339 kb on - strand at 3224.339 kb on - strand at 3224.339 kb on - strand at 3224.365 kb on + strand at 3224.367 kb on + strand at 3224.375 kb on - strand at 3224.402 kb on + strand at 3224.402 kb on + strand at 3224.402 kb on + strand at 3224.402 kb on + strand at 3224.410 kb on - strand, within MPMX20_03074 at 3224.410 kb on - strand, within MPMX20_03074 at 3224.410 kb on - strand, within MPMX20_03074 at 3224.410 kb on - strand, within MPMX20_03074 at 3224.412 kb on + strand, within MPMX20_03074 at 3224.412 kb on + strand, within MPMX20_03074 at 3224.542 kb on - strand, within MPMX20_03074 at 3224.554 kb on - strand, within MPMX20_03074 at 3224.589 kb on - strand, within MPMX20_03074 at 3224.589 kb on - strand, within MPMX20_03074 at 3224.627 kb on + strand, within MPMX20_03074 at 3224.660 kb on + strand, within MPMX20_03074 at 3224.660 kb on + strand, within MPMX20_03074 at 3224.668 kb on - strand, within MPMX20_03074 at 3224.668 kb on - strand, within MPMX20_03074 at 3224.705 kb on + strand, within MPMX20_03074 at 3224.713 kb on - strand, within MPMX20_03074 at 3224.772 kb on - strand, within MPMX20_03074 at 3224.789 kb on - strand, within MPMX20_03074 at 3224.831 kb on + strand, within MPMX20_03074 at 3224.831 kb on + strand, within MPMX20_03074 at 3224.885 kb on - strand, within MPMX20_03074 at 3224.983 kb on - strand, within MPMX20_03074 at 3225.026 kb on - strand, within MPMX20_03074 at 3225.033 kb on + strand, within MPMX20_03074 at 3225.041 kb on - strand, within MPMX20_03074 at 3225.041 kb on - strand, within MPMX20_03074 at 3225.100 kb on + strand, within MPMX20_03074 at 3225.161 kb on + strand, within MPMX20_03074 at 3225.169 kb on - strand at 3225.235 kb on + strand at 3225.235 kb on + strand at 3225.235 kb on + strand at 3225.235 kb on + strand at 3225.243 kb on - strand at 3225.258 kb on - strand at 3225.274 kb on + strand at 3225.405 kb on + strand, within MPMX20_03075 at 3225.503 kb on + strand, within MPMX20_03075 at 3225.511 kb on - strand, within MPMX20_03075 at 3225.511 kb on - strand, within MPMX20_03075 at 3225.592 kb on - strand, within MPMX20_03075 at 3225.696 kb on + strand, within MPMX20_03075 at 3225.740 kb on - strand, within MPMX20_03075 at 3225.793 kb on - strand, within MPMX20_03075 at 3225.820 kb on - strand, within MPMX20_03075 at 3225.846 kb on + strand, within MPMX20_03075 at 3225.846 kb on + strand, within MPMX20_03075 at 3225.861 kb on + strand, within MPMX20_03075 at 3225.861 kb on + strand, within MPMX20_03075 at 3225.999 kb on + strand at 3226.004 kb on + strand at 3226.007 kb on - strand at 3226.018 kb on + strand at 3226.026 kb on - strand at 3226.026 kb on - strand at 3226.056 kb on + strand at 3226.064 kb on - strand at 3226.064 kb on - strand at 3226.074 kb on + strand at 3226.214 kb on + strand, within MPMX20_03076
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 3,223,342 - -0.7 3,223,349 + +0.5 3,223,349 + -0.7 3,223,349 + -0.6 3,223,349 + -0.1 3,223,349 + -0.8 3,223,349 + -1.0 3,223,357 - -1.0 3,223,357 - -0.7 3,223,357 - -0.4 3,223,357 - +0.1 3,223,357 - -1.0 3,223,357 - +0.8 3,223,374 + -0.3 3,223,374 + -0.8 3,223,453 - MPMX20_03073 0.14 -1.9 3,223,492 + MPMX20_03073 0.18 +0.5 3,223,505 - MPMX20_03073 0.19 -1.3 3,223,574 + MPMX20_03073 0.26 -0.3 3,223,577 - MPMX20_03073 0.27 +2.3 3,223,579 + MPMX20_03073 0.27 +2.7 3,223,582 - MPMX20_03073 0.27 +0.2 3,223,584 + MPMX20_03073 0.27 +0.7 3,223,584 + MPMX20_03073 0.27 -0.1 3,223,584 + MPMX20_03073 0.27 +0.2 3,223,584 + MPMX20_03073 0.27 +0.2 3,223,592 - MPMX20_03073 0.28 +0.4 3,223,592 - MPMX20_03073 0.28 +0.1 3,223,719 + MPMX20_03073 0.41 -1.4 3,223,719 + MPMX20_03073 0.41 +0.0 3,223,727 - MPMX20_03073 0.41 +1.7 3,223,738 + MPMX20_03073 0.43 -0.5 3,223,742 - MPMX20_03073 0.43 -0.8 3,223,773 + MPMX20_03073 0.46 +0.3 3,223,785 + MPMX20_03073 0.47 -0.9 3,223,842 + MPMX20_03073 0.53 +0.1 3,223,842 + MPMX20_03073 0.53 -0.3 3,223,845 - MPMX20_03073 0.53 +0.5 3,223,845 - MPMX20_03073 0.53 +1.3 3,223,855 - MPMX20_03073 0.54 -0.3 3,223,897 + MPMX20_03073 0.58 -0.5 3,223,902 + MPMX20_03073 0.59 +0.4 3,223,902 + MPMX20_03073 0.59 +2.7 3,223,922 - MPMX20_03073 0.61 +0.2 3,223,939 + MPMX20_03073 0.63 -0.7 3,223,947 - MPMX20_03073 0.63 +0.2 3,224,063 - MPMX20_03073 0.75 +1.0 3,224,108 - MPMX20_03073 0.79 +1.1 3,224,184 + MPMX20_03073 0.87 -0.6 3,224,197 - MPMX20_03073 0.88 +0.4 3,224,207 - MPMX20_03073 0.89 +0.6 3,224,241 + -0.5 3,224,258 - -1.0 3,224,307 + -0.6 3,224,339 - -0.7 3,224,339 - -1.4 3,224,339 - -2.9 3,224,339 - -0.6 3,224,339 - -0.5 3,224,365 + +2.5 3,224,367 + +0.4 3,224,375 - -0.2 3,224,402 + -0.9 3,224,402 + -1.2 3,224,402 + +0.9 3,224,402 + -0.8 3,224,410 - MPMX20_03074 0.10 +0.8 3,224,410 - MPMX20_03074 0.10 -1.4 3,224,410 - MPMX20_03074 0.10 -0.0 3,224,410 - MPMX20_03074 0.10 +0.7 3,224,412 + MPMX20_03074 0.11 -0.9 3,224,412 + MPMX20_03074 0.11 -0.9 3,224,542 - MPMX20_03074 0.24 -0.3 3,224,554 - MPMX20_03074 0.25 +8.4 3,224,589 - MPMX20_03074 0.29 -0.2 3,224,589 - MPMX20_03074 0.29 -1.5 3,224,627 + MPMX20_03074 0.33 +2.3 3,224,660 + MPMX20_03074 0.37 -0.7 3,224,660 + MPMX20_03074 0.37 +1.3 3,224,668 - MPMX20_03074 0.37 +0.4 3,224,668 - MPMX20_03074 0.37 -2.3 3,224,705 + MPMX20_03074 0.41 +0.9 3,224,713 - MPMX20_03074 0.42 +1.6 3,224,772 - MPMX20_03074 0.48 +0.5 3,224,789 - MPMX20_03074 0.50 -1.2 3,224,831 + MPMX20_03074 0.55 -0.6 3,224,831 + MPMX20_03074 0.55 -0.8 3,224,885 - MPMX20_03074 0.60 +0.4 3,224,983 - MPMX20_03074 0.70 +0.7 3,225,026 - MPMX20_03074 0.75 -0.3 3,225,033 + MPMX20_03074 0.76 -0.0 3,225,041 - MPMX20_03074 0.77 -1.7 3,225,041 - MPMX20_03074 0.77 +0.6 3,225,100 + MPMX20_03074 0.83 +0.7 3,225,161 + MPMX20_03074 0.89 +1.7 3,225,169 - -1.0 3,225,235 + -0.2 3,225,235 + +0.3 3,225,235 + +0.1 3,225,235 + +3.0 3,225,243 - -1.6 3,225,258 - -0.9 3,225,274 + -0.2 3,225,405 + MPMX20_03075 0.22 +0.6 3,225,503 + MPMX20_03075 0.35 -1.3 3,225,511 - MPMX20_03075 0.37 -1.4 3,225,511 - MPMX20_03075 0.37 -1.5 3,225,592 - MPMX20_03075 0.47 -0.7 3,225,696 + MPMX20_03075 0.61 -1.1 3,225,740 - MPMX20_03075 0.67 +0.1 3,225,793 - MPMX20_03075 0.74 +0.3 3,225,820 - MPMX20_03075 0.78 -1.6 3,225,846 + MPMX20_03075 0.81 +0.2 3,225,846 + MPMX20_03075 0.81 +1.3 3,225,861 + MPMX20_03075 0.83 -0.5 3,225,861 + MPMX20_03075 0.83 -1.9 3,225,999 + +0.9 3,226,004 + -1.9 3,226,007 - -0.1 3,226,018 + -0.4 3,226,026 - -0.1 3,226,026 - -0.1 3,226,056 + -0.1 3,226,064 - +0.2 3,226,064 - +0.1 3,226,074 + +1.1 3,226,214 + MPMX20_03076 0.23 -0.1
Or see this region's nucleotide sequence