Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02974 and MPMX20_02975 overlap by 1 nucleotides MPMX20_02975 and MPMX20_02976 overlap by 4 nucleotides
MPMX20_02974: MPMX20_02974 - N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase, at 3,105,443 to 3,107,185
_02974
MPMX20_02975: MPMX20_02975 - N(6)-hydroxylysine O-acetyltransferase, at 3,107,185 to 3,108,132
_02975
MPMX20_02976: MPMX20_02976 - Aerobactin synthase, at 3,108,129 to 3,109,871
_02976
Position (kb)
3107
3108
3109 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 3106.307 kb on - strand, within MPMX20_02974 at 3106.309 kb on + strand, within MPMX20_02974 at 3106.309 kb on + strand, within MPMX20_02974 at 3106.309 kb on + strand, within MPMX20_02974 at 3106.372 kb on + strand, within MPMX20_02974 at 3106.372 kb on + strand, within MPMX20_02974 at 3106.372 kb on + strand, within MPMX20_02974 at 3106.380 kb on - strand, within MPMX20_02974 at 3106.410 kb on + strand, within MPMX20_02974 at 3106.410 kb on + strand, within MPMX20_02974 at 3106.430 kb on - strand, within MPMX20_02974 at 3106.433 kb on + strand, within MPMX20_02974 at 3106.443 kb on + strand, within MPMX20_02974 at 3106.443 kb on + strand, within MPMX20_02974 at 3106.443 kb on + strand, within MPMX20_02974 at 3106.513 kb on - strand, within MPMX20_02974 at 3106.539 kb on + strand, within MPMX20_02974 at 3106.546 kb on + strand, within MPMX20_02974 at 3106.569 kb on - strand, within MPMX20_02974 at 3106.578 kb on - strand, within MPMX20_02974 at 3106.661 kb on - strand, within MPMX20_02974 at 3106.693 kb on + strand, within MPMX20_02974 at 3106.804 kb on - strand, within MPMX20_02974 at 3106.820 kb on - strand, within MPMX20_02974 at 3106.928 kb on - strand, within MPMX20_02974 at 3106.928 kb on - strand, within MPMX20_02974 at 3106.958 kb on + strand, within MPMX20_02974 at 3106.993 kb on - strand, within MPMX20_02974 at 3106.998 kb on - strand, within MPMX20_02974 at 3107.051 kb on + strand at 3107.066 kb on + strand at 3107.074 kb on - strand at 3107.276 kb on + strand at 3107.283 kb on + strand, within MPMX20_02975 at 3107.289 kb on - strand, within MPMX20_02975 at 3107.351 kb on + strand, within MPMX20_02975 at 3107.376 kb on + strand, within MPMX20_02975 at 3107.376 kb on + strand, within MPMX20_02975 at 3107.376 kb on + strand, within MPMX20_02975 at 3107.376 kb on + strand, within MPMX20_02975 at 3107.376 kb on + strand, within MPMX20_02975 at 3107.384 kb on - strand, within MPMX20_02975 at 3107.384 kb on - strand, within MPMX20_02975 at 3107.384 kb on - strand, within MPMX20_02975 at 3107.416 kb on + strand, within MPMX20_02975 at 3107.543 kb on - strand, within MPMX20_02975 at 3107.583 kb on - strand, within MPMX20_02975 at 3107.606 kb on - strand, within MPMX20_02975 at 3107.658 kb on - strand, within MPMX20_02975 at 3107.658 kb on - strand, within MPMX20_02975 at 3107.756 kb on + strand, within MPMX20_02975 at 3107.764 kb on - strand, within MPMX20_02975 at 3107.777 kb on + strand, within MPMX20_02975 at 3107.821 kb on + strand, within MPMX20_02975 at 3108.013 kb on - strand, within MPMX20_02975 at 3108.047 kb on + strand at 3108.085 kb on - strand at 3108.106 kb on + strand at 3108.127 kb on - strand at 3108.127 kb on - strand at 3108.129 kb on - strand at 3108.181 kb on - strand at 3108.266 kb on + strand at 3108.386 kb on - strand, within MPMX20_02976 at 3108.491 kb on + strand, within MPMX20_02976 at 3108.493 kb on + strand, within MPMX20_02976 at 3108.576 kb on - strand, within MPMX20_02976 at 3108.582 kb on + strand, within MPMX20_02976 at 3108.591 kb on - strand, within MPMX20_02976 at 3108.639 kb on - strand, within MPMX20_02976 at 3108.651 kb on + strand, within MPMX20_02976 at 3108.654 kb on - strand, within MPMX20_02976 at 3108.657 kb on + strand, within MPMX20_02976 at 3108.665 kb on - strand, within MPMX20_02976 at 3108.665 kb on - strand, within MPMX20_02976 at 3108.684 kb on + strand, within MPMX20_02976 at 3108.718 kb on - strand, within MPMX20_02976 at 3108.911 kb on + strand, within MPMX20_02976 at 3108.998 kb on + strand, within MPMX20_02976 at 3109.030 kb on + strand, within MPMX20_02976 at 3109.038 kb on - strand, within MPMX20_02976 at 3109.038 kb on - strand, within MPMX20_02976 at 3109.038 kb on - strand, within MPMX20_02976 at 3109.043 kb on - strand, within MPMX20_02976 at 3109.080 kb on - strand, within MPMX20_02976 at 3109.126 kb on + strand, within MPMX20_02976 at 3109.129 kb on - strand, within MPMX20_02976
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 3,106,307 - MPMX20_02974 0.50 -0.7 3,106,309 + MPMX20_02974 0.50 +0.5 3,106,309 + MPMX20_02974 0.50 +1.2 3,106,309 + MPMX20_02974 0.50 +5.2 3,106,372 + MPMX20_02974 0.53 +0.7 3,106,372 + MPMX20_02974 0.53 -1.2 3,106,372 + MPMX20_02974 0.53 -1.8 3,106,380 - MPMX20_02974 0.54 -3.3 3,106,410 + MPMX20_02974 0.55 -0.3 3,106,410 + MPMX20_02974 0.55 -2.7 3,106,430 - MPMX20_02974 0.57 -0.1 3,106,433 + MPMX20_02974 0.57 -0.8 3,106,443 + MPMX20_02974 0.57 +0.8 3,106,443 + MPMX20_02974 0.57 -0.5 3,106,443 + MPMX20_02974 0.57 -2.0 3,106,513 - MPMX20_02974 0.61 -0.7 3,106,539 + MPMX20_02974 0.63 +0.3 3,106,546 + MPMX20_02974 0.63 +0.6 3,106,569 - MPMX20_02974 0.65 +1.7 3,106,578 - MPMX20_02974 0.65 -0.9 3,106,661 - MPMX20_02974 0.70 +2.5 3,106,693 + MPMX20_02974 0.72 +1.5 3,106,804 - MPMX20_02974 0.78 -0.9 3,106,820 - MPMX20_02974 0.79 -2.5 3,106,928 - MPMX20_02974 0.85 -0.4 3,106,928 - MPMX20_02974 0.85 -0.5 3,106,958 + MPMX20_02974 0.87 -0.1 3,106,993 - MPMX20_02974 0.89 -1.5 3,106,998 - MPMX20_02974 0.89 -1.4 3,107,051 + -0.8 3,107,066 + -0.0 3,107,074 - -1.5 3,107,276 + +1.1 3,107,283 + MPMX20_02975 0.10 -0.2 3,107,289 - MPMX20_02975 0.11 +0.3 3,107,351 + MPMX20_02975 0.18 -1.7 3,107,376 + MPMX20_02975 0.20 -0.4 3,107,376 + MPMX20_02975 0.20 +0.1 3,107,376 + MPMX20_02975 0.20 +0.6 3,107,376 + MPMX20_02975 0.20 -3.1 3,107,376 + MPMX20_02975 0.20 -1.0 3,107,384 - MPMX20_02975 0.21 -1.1 3,107,384 - MPMX20_02975 0.21 +1.9 3,107,384 - MPMX20_02975 0.21 -0.5 3,107,416 + MPMX20_02975 0.24 +0.1 3,107,543 - MPMX20_02975 0.38 -1.7 3,107,583 - MPMX20_02975 0.42 -1.6 3,107,606 - MPMX20_02975 0.44 -0.3 3,107,658 - MPMX20_02975 0.50 -0.5 3,107,658 - MPMX20_02975 0.50 +2.3 3,107,756 + MPMX20_02975 0.60 -2.2 3,107,764 - MPMX20_02975 0.61 -0.5 3,107,777 + MPMX20_02975 0.62 -1.5 3,107,821 + MPMX20_02975 0.67 -1.6 3,108,013 - MPMX20_02975 0.87 -2.6 3,108,047 + +0.5 3,108,085 - -0.9 3,108,106 + +0.2 3,108,127 - -0.1 3,108,127 - +0.2 3,108,129 - +0.1 3,108,181 - -0.9 3,108,266 + -0.4 3,108,386 - MPMX20_02976 0.15 -0.4 3,108,491 + MPMX20_02976 0.21 -1.1 3,108,493 + MPMX20_02976 0.21 -2.6 3,108,576 - MPMX20_02976 0.26 +0.2 3,108,582 + MPMX20_02976 0.26 -0.6 3,108,591 - MPMX20_02976 0.27 -1.8 3,108,639 - MPMX20_02976 0.29 -0.5 3,108,651 + MPMX20_02976 0.30 +2.1 3,108,654 - MPMX20_02976 0.30 -2.2 3,108,657 + MPMX20_02976 0.30 -0.2 3,108,665 - MPMX20_02976 0.31 -0.8 3,108,665 - MPMX20_02976 0.31 -0.5 3,108,684 + MPMX20_02976 0.32 +0.9 3,108,718 - MPMX20_02976 0.34 -0.4 3,108,911 + MPMX20_02976 0.45 -0.7 3,108,998 + MPMX20_02976 0.50 +2.3 3,109,030 + MPMX20_02976 0.52 +6.5 3,109,038 - MPMX20_02976 0.52 +0.1 3,109,038 - MPMX20_02976 0.52 -0.9 3,109,038 - MPMX20_02976 0.52 -0.9 3,109,043 - MPMX20_02976 0.52 -0.5 3,109,080 - MPMX20_02976 0.55 +0.3 3,109,126 + MPMX20_02976 0.57 -1.5 3,109,129 - MPMX20_02976 0.57 -1.0
Or see this region's nucleotide sequence