Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02970

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02969 and MPMX20_02970 overlap by 4 nucleotidesMPMX20_02970 and MPMX20_02971 overlap by 26 nucleotides MPMX20_02969: MPMX20_02969 - Alpha-ketoglutarate permease, at 3,100,011 to 3,101,324 _02969 MPMX20_02970: MPMX20_02970 - Aconitate isomerase, at 3,101,321 to 3,102,109 _02970 MPMX20_02971: MPMX20_02971 - HTH-type transcriptional regulator CynR, at 3,102,084 to 3,102,983 _02971 Position (kb) 3101 3102 3103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 3100.342 kb on + strand, within MPMX20_02969at 3100.342 kb on + strand, within MPMX20_02969at 3100.347 kb on + strand, within MPMX20_02969at 3100.347 kb on + strand, within MPMX20_02969at 3100.350 kb on - strand, within MPMX20_02969at 3100.350 kb on - strand, within MPMX20_02969at 3100.355 kb on - strand, within MPMX20_02969at 3100.355 kb on - strand, within MPMX20_02969at 3100.355 kb on - strand, within MPMX20_02969at 3100.355 kb on - strand, within MPMX20_02969at 3100.359 kb on + strand, within MPMX20_02969at 3100.359 kb on + strand, within MPMX20_02969at 3100.367 kb on + strand, within MPMX20_02969at 3100.367 kb on + strand, within MPMX20_02969at 3100.410 kb on + strand, within MPMX20_02969at 3100.413 kb on - strand, within MPMX20_02969at 3100.418 kb on - strand, within MPMX20_02969at 3100.521 kb on + strand, within MPMX20_02969at 3100.529 kb on - strand, within MPMX20_02969at 3100.574 kb on + strand, within MPMX20_02969at 3100.579 kb on + strand, within MPMX20_02969at 3100.579 kb on + strand, within MPMX20_02969at 3100.582 kb on - strand, within MPMX20_02969at 3100.587 kb on - strand, within MPMX20_02969at 3100.587 kb on - strand, within MPMX20_02969at 3100.639 kb on + strand, within MPMX20_02969at 3100.639 kb on + strand, within MPMX20_02969at 3100.648 kb on + strand, within MPMX20_02969at 3100.648 kb on + strand, within MPMX20_02969at 3100.651 kb on - strand, within MPMX20_02969at 3100.666 kb on - strand, within MPMX20_02969at 3100.666 kb on - strand, within MPMX20_02969at 3100.827 kb on + strand, within MPMX20_02969at 3100.899 kb on + strand, within MPMX20_02969at 3100.929 kb on - strand, within MPMX20_02969at 3100.966 kb on + strand, within MPMX20_02969at 3100.969 kb on - strand, within MPMX20_02969at 3100.974 kb on - strand, within MPMX20_02969at 3101.046 kb on + strand, within MPMX20_02969at 3101.084 kb on + strand, within MPMX20_02969at 3101.092 kb on - strand, within MPMX20_02969at 3101.122 kb on - strand, within MPMX20_02969at 3101.131 kb on - strand, within MPMX20_02969at 3101.155 kb on - strand, within MPMX20_02969at 3101.198 kb on + strandat 3101.227 kb on - strandat 3101.249 kb on + strandat 3101.257 kb on + strandat 3101.257 kb on + strandat 3101.257 kb on - strandat 3101.365 kb on - strandat 3101.366 kb on + strandat 3101.410 kb on - strand, within MPMX20_02970at 3101.488 kb on - strand, within MPMX20_02970at 3101.495 kb on - strand, within MPMX20_02970at 3101.505 kb on - strand, within MPMX20_02970at 3101.522 kb on + strand, within MPMX20_02970at 3101.604 kb on + strand, within MPMX20_02970at 3101.621 kb on - strand, within MPMX20_02970at 3101.622 kb on - strand, within MPMX20_02970at 3101.641 kb on + strand, within MPMX20_02970at 3101.772 kb on + strand, within MPMX20_02970at 3101.780 kb on - strand, within MPMX20_02970at 3101.815 kb on + strand, within MPMX20_02970at 3101.883 kb on + strand, within MPMX20_02970at 3101.883 kb on + strand, within MPMX20_02970at 3101.883 kb on + strand, within MPMX20_02970at 3101.891 kb on - strand, within MPMX20_02970at 3101.986 kb on - strand, within MPMX20_02970at 3102.011 kb on + strand, within MPMX20_02970at 3102.046 kb on + strandat 3102.049 kb on - strandat 3102.052 kb on - strandat 3102.054 kb on - strandat 3102.054 kb on - strandat 3102.091 kb on + strandat 3102.091 kb on + strandat 3102.133 kb on + strandat 3102.167 kb on + strandat 3102.167 kb on + strandat 3102.203 kb on + strand, within MPMX20_02971at 3102.203 kb on + strand, within MPMX20_02971at 3102.211 kb on - strand, within MPMX20_02971at 3102.216 kb on - strand, within MPMX20_02971at 3102.218 kb on - strand, within MPMX20_02971at 3102.348 kb on - strand, within MPMX20_02971at 3102.365 kb on + strand, within MPMX20_02971at 3102.365 kb on + strand, within MPMX20_02971at 3102.365 kb on + strand, within MPMX20_02971at 3102.365 kb on + strand, within MPMX20_02971at 3102.365 kb on + strand, within MPMX20_02971at 3102.373 kb on - strand, within MPMX20_02971at 3102.400 kb on - strand, within MPMX20_02971at 3102.400 kb on - strand, within MPMX20_02971at 3102.405 kb on - strand, within MPMX20_02971at 3102.434 kb on - strand, within MPMX20_02971at 3102.459 kb on - strand, within MPMX20_02971at 3102.599 kb on - strand, within MPMX20_02971at 3102.666 kb on - strand, within MPMX20_02971at 3102.750 kb on - strand, within MPMX20_02971at 3102.772 kb on - strand, within MPMX20_02971at 3102.783 kb on + strand, within MPMX20_02971at 3102.806 kb on - strand, within MPMX20_02971at 3102.841 kb on - strand, within MPMX20_02971at 3102.841 kb on - strand, within MPMX20_02971at 3102.873 kb on + strand, within MPMX20_02971at 3102.876 kb on - strand, within MPMX20_02971at 3102.878 kb on + strand, within MPMX20_02971at 3102.878 kb on + strand, within MPMX20_02971at 3102.949 kb on + strandat 3103.051 kb on - strandat 3103.073 kb on + strandat 3103.073 kb on + strandat 3103.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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3,100,342 + MPMX20_02969 0.25 -0.2
3,100,342 + MPMX20_02969 0.25 -0.1
3,100,347 + MPMX20_02969 0.26 -0.2
3,100,347 + MPMX20_02969 0.26 -1.3
3,100,350 - MPMX20_02969 0.26 +1.9
3,100,350 - MPMX20_02969 0.26 +0.7
3,100,355 - MPMX20_02969 0.26 +1.2
3,100,355 - MPMX20_02969 0.26 -1.8
3,100,355 - MPMX20_02969 0.26 +1.4
3,100,355 - MPMX20_02969 0.26 -0.4
3,100,359 + MPMX20_02969 0.26 -0.5
3,100,359 + MPMX20_02969 0.26 +0.0
3,100,367 + MPMX20_02969 0.27 +3.9
3,100,367 + MPMX20_02969 0.27 -0.4
3,100,410 + MPMX20_02969 0.30 -1.5
3,100,413 - MPMX20_02969 0.31 -0.1
3,100,418 - MPMX20_02969 0.31 -0.9
3,100,521 + MPMX20_02969 0.39 -0.4
3,100,529 - MPMX20_02969 0.39 -0.3
3,100,574 + MPMX20_02969 0.43 +1.9
3,100,579 + MPMX20_02969 0.43 +0.9
3,100,579 + MPMX20_02969 0.43 -0.3
3,100,582 - MPMX20_02969 0.43 -0.9
3,100,587 - MPMX20_02969 0.44 -0.8
3,100,587 - MPMX20_02969 0.44 +1.7
3,100,639 + MPMX20_02969 0.48 +0.4
3,100,639 + MPMX20_02969 0.48 +2.2
3,100,648 + MPMX20_02969 0.48 -0.3
3,100,648 + MPMX20_02969 0.48 +2.9
3,100,651 - MPMX20_02969 0.49 -0.7
3,100,666 - MPMX20_02969 0.50 +1.4
3,100,666 - MPMX20_02969 0.50 -3.2
3,100,827 + MPMX20_02969 0.62 -0.0
3,100,899 + MPMX20_02969 0.68 +0.0
3,100,929 - MPMX20_02969 0.70 -0.5
3,100,966 + MPMX20_02969 0.73 -0.5
3,100,969 - MPMX20_02969 0.73 -1.1
3,100,974 - MPMX20_02969 0.73 +1.3
3,101,046 + MPMX20_02969 0.79 -0.7
3,101,084 + MPMX20_02969 0.82 -1.3
3,101,092 - MPMX20_02969 0.82 -1.0
3,101,122 - MPMX20_02969 0.85 -0.6
3,101,131 - MPMX20_02969 0.85 +1.0
3,101,155 - MPMX20_02969 0.87 +0.3
3,101,198 + -0.1
3,101,227 - -0.3
3,101,249 + +0.3
3,101,257 + -0.1
3,101,257 + +0.1
3,101,257 - -0.6
3,101,365 - +0.0
3,101,366 + -0.7
3,101,410 - MPMX20_02970 0.11 +1.3
3,101,488 - MPMX20_02970 0.21 +0.6
3,101,495 - MPMX20_02970 0.22 -0.8
3,101,505 - MPMX20_02970 0.23 -0.9
3,101,522 + MPMX20_02970 0.25 -0.8
3,101,604 + MPMX20_02970 0.36 +2.0
3,101,621 - MPMX20_02970 0.38 +0.3
3,101,622 - MPMX20_02970 0.38 -1.1
3,101,641 + MPMX20_02970 0.41 +2.0
3,101,772 + MPMX20_02970 0.57 +0.4
3,101,780 - MPMX20_02970 0.58 -1.1
3,101,815 + MPMX20_02970 0.63 +1.1
3,101,883 + MPMX20_02970 0.71 -0.9
3,101,883 + MPMX20_02970 0.71 +10.4
3,101,883 + MPMX20_02970 0.71 -0.6
3,101,891 - MPMX20_02970 0.72 -0.7
3,101,986 - MPMX20_02970 0.84 -0.8
3,102,011 + MPMX20_02970 0.87 -0.8
3,102,046 + -0.6
3,102,049 - +1.4
3,102,052 - -2.1
3,102,054 - -3.1
3,102,054 - -0.6
3,102,091 + -0.8
3,102,091 + -1.4
3,102,133 + +0.3
3,102,167 + +0.1
3,102,167 + +1.3
3,102,203 + MPMX20_02971 0.13 -0.7
3,102,203 + MPMX20_02971 0.13 -1.6
3,102,211 - MPMX20_02971 0.14 +0.1
3,102,216 - MPMX20_02971 0.15 -0.8
3,102,218 - MPMX20_02971 0.15 -0.5
3,102,348 - MPMX20_02971 0.29 +0.2
3,102,365 + MPMX20_02971 0.31 -0.5
3,102,365 + MPMX20_02971 0.31 -1.8
3,102,365 + MPMX20_02971 0.31 -0.7
3,102,365 + MPMX20_02971 0.31 -0.6
3,102,365 + MPMX20_02971 0.31 -0.5
3,102,373 - MPMX20_02971 0.32 -1.0
3,102,400 - MPMX20_02971 0.35 -0.1
3,102,400 - MPMX20_02971 0.35 +1.2
3,102,405 - MPMX20_02971 0.36 -0.7
3,102,434 - MPMX20_02971 0.39 -0.7
3,102,459 - MPMX20_02971 0.42 -2.5
3,102,599 - MPMX20_02971 0.57 +1.9
3,102,666 - MPMX20_02971 0.65 +0.3
3,102,750 - MPMX20_02971 0.74 +0.9
3,102,772 - MPMX20_02971 0.76 -1.1
3,102,783 + MPMX20_02971 0.78 -0.9
3,102,806 - MPMX20_02971 0.80 -0.3
3,102,841 - MPMX20_02971 0.84 -1.8
3,102,841 - MPMX20_02971 0.84 -0.0
3,102,873 + MPMX20_02971 0.88 +0.1
3,102,876 - MPMX20_02971 0.88 +0.6
3,102,878 + MPMX20_02971 0.88 -0.5
3,102,878 + MPMX20_02971 0.88 +0.3
3,102,949 + +0.0
3,103,051 - +0.2
3,103,073 + -0.8
3,103,073 + +1.4
3,103,081 - -0.3

Or see this region's nucleotide sequence