Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02584 and MPMX20_02585 are separated by 11 nucleotides MPMX20_02585 and MPMX20_02586 are separated by 14 nucleotides MPMX20_02586 and MPMX20_02587 are separated by 83 nucleotides
MPMX20_02584: MPMX20_02584 - Oligopeptide transport ATP-binding protein OppD, at 2,719,168 to 2,720,181
_02584
MPMX20_02585: MPMX20_02585 - Oligopeptide transport system permease protein OppC, at 2,720,193 to 2,721,101
_02585
MPMX20_02586: MPMX20_02586 - Oligopeptide transport system permease protein OppB, at 2,721,116 to 2,722,036
_02586
MPMX20_02587: MPMX20_02587 - Periplasmic oligopeptide-binding protein, at 2,722,120 to 2,723,751
_02587
Position (kb)
2721
2722
2723 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2720.124 kb on + strand at 2720.129 kb on + strand at 2720.184 kb on - strand at 2720.191 kb on + strand at 2720.199 kb on - strand at 2720.199 kb on - strand at 2720.199 kb on - strand at 2720.199 kb on - strand at 2720.225 kb on + strand at 2720.225 kb on + strand at 2720.280 kb on + strand at 2720.288 kb on - strand, within MPMX20_02585 at 2720.288 kb on - strand, within MPMX20_02585 at 2720.333 kb on - strand, within MPMX20_02585 at 2720.354 kb on - strand, within MPMX20_02585 at 2720.354 kb on - strand, within MPMX20_02585 at 2720.369 kb on + strand, within MPMX20_02585 at 2720.387 kb on - strand, within MPMX20_02585 at 2720.435 kb on + strand, within MPMX20_02585 at 2720.443 kb on - strand, within MPMX20_02585 at 2720.458 kb on - strand, within MPMX20_02585 at 2720.484 kb on + strand, within MPMX20_02585 at 2720.494 kb on + strand, within MPMX20_02585 at 2720.502 kb on - strand, within MPMX20_02585 at 2720.502 kb on - strand, within MPMX20_02585 at 2720.502 kb on - strand, within MPMX20_02585 at 2720.536 kb on - strand, within MPMX20_02585 at 2720.647 kb on - strand, within MPMX20_02585 at 2720.719 kb on - strand, within MPMX20_02585 at 2720.741 kb on - strand, within MPMX20_02585 at 2720.825 kb on - strand, within MPMX20_02585 at 2721.037 kb on - strand at 2721.144 kb on + strand at 2721.144 kb on + strand at 2721.206 kb on + strand at 2721.248 kb on - strand, within MPMX20_02586 at 2721.254 kb on - strand, within MPMX20_02586 at 2721.330 kb on + strand, within MPMX20_02586 at 2721.360 kb on - strand, within MPMX20_02586 at 2721.365 kb on - strand, within MPMX20_02586 at 2721.371 kb on + strand, within MPMX20_02586 at 2721.419 kb on + strand, within MPMX20_02586 at 2721.436 kb on + strand, within MPMX20_02586 at 2721.480 kb on + strand, within MPMX20_02586 at 2721.546 kb on + strand, within MPMX20_02586 at 2721.578 kb on + strand, within MPMX20_02586 at 2721.579 kb on + strand, within MPMX20_02586 at 2721.601 kb on + strand, within MPMX20_02586 at 2721.611 kb on + strand, within MPMX20_02586 at 2721.611 kb on + strand, within MPMX20_02586 at 2721.611 kb on + strand, within MPMX20_02586 at 2721.619 kb on - strand, within MPMX20_02586 at 2721.619 kb on - strand, within MPMX20_02586 at 2721.619 kb on - strand, within MPMX20_02586 at 2721.639 kb on - strand, within MPMX20_02586 at 2721.656 kb on - strand, within MPMX20_02586 at 2721.702 kb on - strand, within MPMX20_02586 at 2721.719 kb on + strand, within MPMX20_02586 at 2721.738 kb on + strand, within MPMX20_02586 at 2721.766 kb on + strand, within MPMX20_02586 at 2721.821 kb on - strand, within MPMX20_02586 at 2721.842 kb on + strand, within MPMX20_02586 at 2721.851 kb on - strand, within MPMX20_02586 at 2721.916 kb on + strand, within MPMX20_02586 at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.046 kb on - strand at 2722.078 kb on - strand at 2722.094 kb on + strand at 2722.094 kb on + strand at 2722.094 kb on + strand at 2722.099 kb on + strand at 2722.101 kb on - strand at 2722.102 kb on - strand at 2722.102 kb on - strand at 2722.102 kb on - strand at 2722.102 kb on - strand at 2722.102 kb on - strand at 2722.102 kb on - strand at 2722.113 kb on - strand at 2722.178 kb on + strand at 2722.226 kb on - strand at 2722.230 kb on - strand at 2722.250 kb on + strand at 2722.271 kb on - strand at 2722.281 kb on + strand at 2722.289 kb on - strand, within MPMX20_02587 at 2722.289 kb on - strand, within MPMX20_02587 at 2722.296 kb on - strand, within MPMX20_02587 at 2722.346 kb on + strand, within MPMX20_02587 at 2722.354 kb on - strand, within MPMX20_02587 at 2722.354 kb on - strand, within MPMX20_02587 at 2722.365 kb on + strand, within MPMX20_02587 at 2722.373 kb on - strand, within MPMX20_02587 at 2722.398 kb on - strand, within MPMX20_02587 at 2722.419 kb on + strand, within MPMX20_02587 at 2722.566 kb on + strand, within MPMX20_02587 at 2722.566 kb on + strand, within MPMX20_02587 at 2722.566 kb on + strand, within MPMX20_02587 at 2722.566 kb on + strand, within MPMX20_02587 at 2722.574 kb on + strand, within MPMX20_02587 at 2722.574 kb on - strand, within MPMX20_02587 at 2722.574 kb on - strand, within MPMX20_02587 at 2722.577 kb on + strand, within MPMX20_02587 at 2722.582 kb on - strand, within MPMX20_02587 at 2722.587 kb on + strand, within MPMX20_02587 at 2722.587 kb on + strand, within MPMX20_02587 at 2722.587 kb on + strand, within MPMX20_02587 at 2722.587 kb on + strand, within MPMX20_02587 at 2722.587 kb on + strand, within MPMX20_02587 at 2722.587 kb on + strand, within MPMX20_02587 at 2722.595 kb on - strand, within MPMX20_02587 at 2722.595 kb on - strand, within MPMX20_02587 at 2722.595 kb on - strand, within MPMX20_02587 at 2722.595 kb on - strand, within MPMX20_02587 at 2722.595 kb on - strand, within MPMX20_02587 at 2722.685 kb on + strand, within MPMX20_02587 at 2722.721 kb on + strand, within MPMX20_02587 at 2722.721 kb on + strand, within MPMX20_02587 at 2722.721 kb on + strand, within MPMX20_02587 at 2722.729 kb on - strand, within MPMX20_02587 at 2722.734 kb on - strand, within MPMX20_02587 at 2722.785 kb on + strand, within MPMX20_02587 at 2722.785 kb on + strand, within MPMX20_02587 at 2722.785 kb on + strand, within MPMX20_02587 at 2722.800 kb on + strand, within MPMX20_02587 at 2722.815 kb on + strand, within MPMX20_02587 at 2722.819 kb on + strand, within MPMX20_02587 at 2722.823 kb on - strand, within MPMX20_02587 at 2722.852 kb on + strand, within MPMX20_02587 at 2722.859 kb on + strand, within MPMX20_02587 at 2722.936 kb on + strand, within MPMX20_02587 at 2722.970 kb on + strand, within MPMX20_02587 at 2722.972 kb on + strand, within MPMX20_02587 at 2722.986 kb on + strand, within MPMX20_02587 at 2722.986 kb on + strand, within MPMX20_02587 at 2722.994 kb on - strand, within MPMX20_02587 at 2722.994 kb on - strand, within MPMX20_02587
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 2,720,124 + -2.2 2,720,129 + +0.9 2,720,184 - -0.6 2,720,191 + -0.5 2,720,199 - -0.5 2,720,199 - +0.6 2,720,199 - +0.5 2,720,199 - +0.0 2,720,225 + -1.6 2,720,225 + +0.1 2,720,280 + +0.4 2,720,288 - MPMX20_02585 0.10 -0.1 2,720,288 - MPMX20_02585 0.10 -2.4 2,720,333 - MPMX20_02585 0.15 -0.4 2,720,354 - MPMX20_02585 0.18 -0.4 2,720,354 - MPMX20_02585 0.18 -1.7 2,720,369 + MPMX20_02585 0.19 +0.6 2,720,387 - MPMX20_02585 0.21 -0.6 2,720,435 + MPMX20_02585 0.27 -0.5 2,720,443 - MPMX20_02585 0.28 -2.4 2,720,458 - MPMX20_02585 0.29 -0.1 2,720,484 + MPMX20_02585 0.32 -2.7 2,720,494 + MPMX20_02585 0.33 -0.6 2,720,502 - MPMX20_02585 0.34 +0.2 2,720,502 - MPMX20_02585 0.34 -0.9 2,720,502 - MPMX20_02585 0.34 -1.5 2,720,536 - MPMX20_02585 0.38 -0.3 2,720,647 - MPMX20_02585 0.50 -1.0 2,720,719 - MPMX20_02585 0.58 +0.3 2,720,741 - MPMX20_02585 0.60 +0.1 2,720,825 - MPMX20_02585 0.70 -0.3 2,721,037 - +0.3 2,721,144 + -2.3 2,721,144 + +1.1 2,721,206 + +0.4 2,721,248 - MPMX20_02586 0.14 -1.7 2,721,254 - MPMX20_02586 0.15 -0.2 2,721,330 + MPMX20_02586 0.23 -1.0 2,721,360 - MPMX20_02586 0.26 -0.2 2,721,365 - MPMX20_02586 0.27 -2.6 2,721,371 + MPMX20_02586 0.28 +0.7 2,721,419 + MPMX20_02586 0.33 -1.6 2,721,436 + MPMX20_02586 0.35 -3.2 2,721,480 + MPMX20_02586 0.40 -0.5 2,721,546 + MPMX20_02586 0.47 -1.9 2,721,578 + MPMX20_02586 0.50 -2.8 2,721,579 + MPMX20_02586 0.50 -0.4 2,721,601 + MPMX20_02586 0.53 -1.3 2,721,611 + MPMX20_02586 0.54 -2.0 2,721,611 + MPMX20_02586 0.54 -0.8 2,721,611 + MPMX20_02586 0.54 +0.7 2,721,619 - MPMX20_02586 0.55 -2.1 2,721,619 - MPMX20_02586 0.55 -1.0 2,721,619 - MPMX20_02586 0.55 +0.1 2,721,639 - MPMX20_02586 0.57 +1.3 2,721,656 - MPMX20_02586 0.59 -1.4 2,721,702 - MPMX20_02586 0.64 +0.7 2,721,719 + MPMX20_02586 0.65 -1.1 2,721,738 + MPMX20_02586 0.68 -1.3 2,721,766 + MPMX20_02586 0.71 -1.1 2,721,821 - MPMX20_02586 0.77 +0.4 2,721,842 + MPMX20_02586 0.79 +0.2 2,721,851 - MPMX20_02586 0.80 +0.4 2,721,916 + MPMX20_02586 0.87 +0.3 2,722,003 + -1.9 2,722,003 + -0.2 2,722,003 + -0.4 2,722,003 + -1.3 2,722,003 + -0.8 2,722,003 + -0.6 2,722,003 + +1.3 2,722,003 + -1.6 2,722,003 + -2.2 2,722,003 + -2.6 2,722,003 + -2.3 2,722,003 + -1.9 2,722,011 - +1.7 2,722,011 - -2.1 2,722,011 - -0.5 2,722,011 - -0.6 2,722,011 - -2.8 2,722,011 - +0.1 2,722,011 - -0.7 2,722,011 - +0.4 2,722,011 - +0.1 2,722,011 - -0.6 2,722,011 - +0.2 2,722,011 - +1.1 2,722,046 - -1.2 2,722,078 - -0.8 2,722,094 + -0.9 2,722,094 + -1.6 2,722,094 + -1.3 2,722,099 + -1.9 2,722,101 - -0.6 2,722,102 - -0.1 2,722,102 - +0.8 2,722,102 - -0.1 2,722,102 - +1.7 2,722,102 - +0.5 2,722,102 - -1.7 2,722,113 - -1.5 2,722,178 + -1.0 2,722,226 - -1.1 2,722,230 - -2.0 2,722,250 + -1.4 2,722,271 - -1.1 2,722,281 + +2.7 2,722,289 - MPMX20_02587 0.10 -0.7 2,722,289 - MPMX20_02587 0.10 -0.3 2,722,296 - MPMX20_02587 0.11 -1.6 2,722,346 + MPMX20_02587 0.14 -2.1 2,722,354 - MPMX20_02587 0.14 -0.6 2,722,354 - MPMX20_02587 0.14 -1.1 2,722,365 + MPMX20_02587 0.15 -2.3 2,722,373 - MPMX20_02587 0.16 -1.8 2,722,398 - MPMX20_02587 0.17 +0.1 2,722,419 + MPMX20_02587 0.18 -0.3 2,722,566 + MPMX20_02587 0.27 -0.6 2,722,566 + MPMX20_02587 0.27 -1.1 2,722,566 + MPMX20_02587 0.27 -0.6 2,722,566 + MPMX20_02587 0.27 -0.5 2,722,574 + MPMX20_02587 0.28 +1.2 2,722,574 - MPMX20_02587 0.28 -0.6 2,722,574 - MPMX20_02587 0.28 +0.4 2,722,577 + MPMX20_02587 0.28 -1.0 2,722,582 - MPMX20_02587 0.28 -0.6 2,722,587 + MPMX20_02587 0.29 -2.2 2,722,587 + MPMX20_02587 0.29 +1.9 2,722,587 + MPMX20_02587 0.29 -0.5 2,722,587 + MPMX20_02587 0.29 -1.7 2,722,587 + MPMX20_02587 0.29 -0.2 2,722,587 + MPMX20_02587 0.29 -0.4 2,722,595 - MPMX20_02587 0.29 -2.8 2,722,595 - MPMX20_02587 0.29 +0.4 2,722,595 - MPMX20_02587 0.29 -0.5 2,722,595 - MPMX20_02587 0.29 -1.1 2,722,595 - MPMX20_02587 0.29 -0.9 2,722,685 + MPMX20_02587 0.35 +0.9 2,722,721 + MPMX20_02587 0.37 -2.4 2,722,721 + MPMX20_02587 0.37 -0.4 2,722,721 + MPMX20_02587 0.37 -1.3 2,722,729 - MPMX20_02587 0.37 -0.2 2,722,734 - MPMX20_02587 0.38 -0.1 2,722,785 + MPMX20_02587 0.41 -1.3 2,722,785 + MPMX20_02587 0.41 -0.5 2,722,785 + MPMX20_02587 0.41 -0.5 2,722,800 + MPMX20_02587 0.42 +0.7 2,722,815 + MPMX20_02587 0.43 +1.5 2,722,819 + MPMX20_02587 0.43 -0.5 2,722,823 - MPMX20_02587 0.43 -0.6 2,722,852 + MPMX20_02587 0.45 -1.4 2,722,859 + MPMX20_02587 0.45 +1.7 2,722,936 + MPMX20_02587 0.50 +1.1 2,722,970 + MPMX20_02587 0.52 +0.4 2,722,972 + MPMX20_02587 0.52 -0.1 2,722,986 + MPMX20_02587 0.53 -0.7 2,722,986 + MPMX20_02587 0.53 -0.9 2,722,994 - MPMX20_02587 0.54 +0.9 2,722,994 - MPMX20_02587 0.54 -0.3
Or see this region's nucleotide sequence