Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02486 and MPMX20_02487 are separated by 88 nucleotides MPMX20_02487 and MPMX20_02488 are separated by 324 nucleotides
MPMX20_02486: MPMX20_02486 - hypothetical protein, at 2,625,279 to 2,626,265
_02486
MPMX20_02487: MPMX20_02487 - Exoribonuclease 2, at 2,626,354 to 2,628,288
_02487
MPMX20_02488: MPMX20_02488 - Cyclic di-GMP phosphodiesterase PdeR, at 2,628,613 to 2,630,604
_02488
Position (kb)
2626
2627
2628
2629 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9 at 2625.454 kb on - strand, within MPMX20_02486 at 2625.454 kb on - strand, within MPMX20_02486 at 2625.479 kb on - strand, within MPMX20_02486 at 2625.496 kb on + strand, within MPMX20_02486 at 2625.522 kb on + strand, within MPMX20_02486 at 2625.541 kb on - strand, within MPMX20_02486 at 2625.560 kb on + strand, within MPMX20_02486 at 2625.560 kb on + strand, within MPMX20_02486 at 2625.560 kb on + strand, within MPMX20_02486 at 2625.560 kb on + strand, within MPMX20_02486 at 2625.568 kb on - strand, within MPMX20_02486 at 2625.568 kb on - strand, within MPMX20_02486 at 2625.568 kb on - strand, within MPMX20_02486 at 2625.568 kb on - strand, within MPMX20_02486 at 2625.595 kb on - strand, within MPMX20_02486 at 2625.619 kb on + strand, within MPMX20_02486 at 2625.678 kb on + strand, within MPMX20_02486 at 2625.691 kb on + strand, within MPMX20_02486 at 2625.699 kb on - strand, within MPMX20_02486 at 2625.747 kb on + strand, within MPMX20_02486 at 2625.755 kb on - strand, within MPMX20_02486 at 2625.755 kb on - strand, within MPMX20_02486 at 2625.822 kb on - strand, within MPMX20_02486 at 2625.837 kb on + strand, within MPMX20_02486 at 2625.837 kb on + strand, within MPMX20_02486 at 2625.896 kb on + strand, within MPMX20_02486 at 2625.927 kb on - strand, within MPMX20_02486 at 2625.929 kb on + strand, within MPMX20_02486 at 2625.937 kb on - strand, within MPMX20_02486 at 2625.945 kb on + strand, within MPMX20_02486 at 2625.972 kb on - strand, within MPMX20_02486 at 2626.010 kb on - strand, within MPMX20_02486 at 2626.020 kb on - strand, within MPMX20_02486 at 2626.026 kb on - strand, within MPMX20_02486 at 2626.049 kb on - strand, within MPMX20_02486 at 2626.131 kb on - strand, within MPMX20_02486 at 2626.133 kb on + strand, within MPMX20_02486 at 2626.141 kb on - strand, within MPMX20_02486 at 2626.146 kb on + strand, within MPMX20_02486 at 2626.172 kb on - strand at 2626.189 kb on + strand at 2626.278 kb on + strand at 2626.370 kb on - strand at 2626.448 kb on + strand at 2626.449 kb on - strand at 2626.530 kb on + strand at 2626.605 kb on - strand, within MPMX20_02487 at 2626.628 kb on - strand, within MPMX20_02487 at 2626.686 kb on - strand, within MPMX20_02487 at 2626.800 kb on + strand, within MPMX20_02487 at 2626.835 kb on + strand, within MPMX20_02487 at 2626.854 kb on + strand, within MPMX20_02487 at 2626.854 kb on + strand, within MPMX20_02487 at 2626.862 kb on - strand, within MPMX20_02487 at 2626.933 kb on + strand, within MPMX20_02487 at 2627.059 kb on + strand, within MPMX20_02487 at 2627.155 kb on + strand, within MPMX20_02487 at 2627.160 kb on + strand, within MPMX20_02487 at 2627.291 kb on + strand, within MPMX20_02487 at 2627.391 kb on - strand, within MPMX20_02487 at 2627.391 kb on - strand, within MPMX20_02487 at 2627.391 kb on - strand, within MPMX20_02487 at 2627.455 kb on - strand, within MPMX20_02487 at 2627.455 kb on - strand, within MPMX20_02487 at 2627.481 kb on - strand, within MPMX20_02487 at 2627.483 kb on - strand, within MPMX20_02487 at 2627.552 kb on - strand, within MPMX20_02487 at 2627.563 kb on - strand, within MPMX20_02487 at 2627.606 kb on + strand, within MPMX20_02487 at 2627.616 kb on + strand, within MPMX20_02487 at 2627.697 kb on - strand, within MPMX20_02487 at 2627.762 kb on - strand, within MPMX20_02487 at 2627.833 kb on + strand, within MPMX20_02487 at 2627.833 kb on + strand, within MPMX20_02487 at 2627.833 kb on + strand, within MPMX20_02487 at 2627.833 kb on + strand, within MPMX20_02487 at 2627.841 kb on - strand, within MPMX20_02487 at 2627.873 kb on + strand, within MPMX20_02487 at 2627.881 kb on - strand, within MPMX20_02487 at 2627.901 kb on + strand, within MPMX20_02487 at 2627.901 kb on + strand, within MPMX20_02487 at 2627.901 kb on + strand, within MPMX20_02487 at 2627.903 kb on - strand, within MPMX20_02487 at 2627.903 kb on - strand, within MPMX20_02487 at 2627.906 kb on + strand, within MPMX20_02487 at 2627.935 kb on + strand, within MPMX20_02487 at 2627.996 kb on + strand, within MPMX20_02487 at 2628.013 kb on + strand, within MPMX20_02487 at 2628.018 kb on + strand, within MPMX20_02487 at 2628.026 kb on - strand, within MPMX20_02487 at 2628.036 kb on - strand, within MPMX20_02487 at 2628.096 kb on + strand at 2628.102 kb on - strand at 2628.140 kb on - strand at 2628.156 kb on + strand at 2628.171 kb on + strand at 2628.181 kb on + strand at 2628.194 kb on - strand at 2628.194 kb on - strand at 2628.202 kb on - strand at 2628.263 kb on + strand at 2628.263 kb on + strand at 2628.263 kb on + strand at 2628.263 kb on + strand at 2628.263 kb on + strand at 2628.263 kb on + strand at 2628.263 kb on + strand at 2628.271 kb on - strand at 2628.271 kb on - strand at 2628.271 kb on - strand at 2628.284 kb on + strand at 2628.284 kb on + strand at 2628.308 kb on + strand at 2628.320 kb on + strand at 2628.421 kb on + strand at 2628.421 kb on + strand at 2628.612 kb on + strand at 2628.623 kb on + strand at 2628.631 kb on - strand at 2628.631 kb on - strand at 2628.631 kb on - strand at 2628.658 kb on - strand at 2628.660 kb on + strand at 2628.667 kb on - strand at 2628.685 kb on + strand at 2628.690 kb on + strand at 2628.697 kb on + strand at 2628.698 kb on - strand at 2628.698 kb on - strand at 2628.698 kb on - strand at 2628.705 kb on - strand at 2628.801 kb on - strand at 2628.820 kb on - strand, within MPMX20_02488 at 2628.887 kb on - strand, within MPMX20_02488 at 2628.887 kb on - strand, within MPMX20_02488 at 2628.904 kb on + strand, within MPMX20_02488 at 2628.920 kb on + strand, within MPMX20_02488 at 2628.930 kb on + strand, within MPMX20_02488 at 2628.930 kb on + strand, within MPMX20_02488 at 2628.939 kb on - strand, within MPMX20_02488 at 2628.942 kb on + strand, within MPMX20_02488 at 2628.969 kb on + strand, within MPMX20_02488 at 2628.974 kb on + strand, within MPMX20_02488 at 2629.031 kb on + strand, within MPMX20_02488 at 2629.087 kb on - strand, within MPMX20_02488 at 2629.097 kb on - strand, within MPMX20_02488 at 2629.114 kb on + strand, within MPMX20_02488 at 2629.162 kb on - strand, within MPMX20_02488 at 2629.162 kb on - strand, within MPMX20_02488 at 2629.279 kb on - strand, within MPMX20_02488 at 2629.280 kb on + strand, within MPMX20_02488 at 2629.280 kb on + strand, within MPMX20_02488
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 2,625,454 - MPMX20_02486 0.18 +1.3 2,625,454 - MPMX20_02486 0.18 -0.7 2,625,479 - MPMX20_02486 0.20 -0.6 2,625,496 + MPMX20_02486 0.22 +2.1 2,625,522 + MPMX20_02486 0.25 +0.4 2,625,541 - MPMX20_02486 0.27 -0.7 2,625,560 + MPMX20_02486 0.28 +0.7 2,625,560 + MPMX20_02486 0.28 +0.7 2,625,560 + MPMX20_02486 0.28 +0.3 2,625,560 + MPMX20_02486 0.28 -0.4 2,625,568 - MPMX20_02486 0.29 -1.0 2,625,568 - MPMX20_02486 0.29 +1.8 2,625,568 - MPMX20_02486 0.29 +0.5 2,625,568 - MPMX20_02486 0.29 -0.9 2,625,595 - MPMX20_02486 0.32 +0.1 2,625,619 + MPMX20_02486 0.34 -2.1 2,625,678 + MPMX20_02486 0.40 +1.7 2,625,691 + MPMX20_02486 0.42 -1.5 2,625,699 - MPMX20_02486 0.43 -0.3 2,625,747 + MPMX20_02486 0.47 -0.8 2,625,755 - MPMX20_02486 0.48 -0.6 2,625,755 - MPMX20_02486 0.48 +1.9 2,625,822 - MPMX20_02486 0.55 +0.9 2,625,837 + MPMX20_02486 0.57 +0.5 2,625,837 + MPMX20_02486 0.57 +0.7 2,625,896 + MPMX20_02486 0.63 -0.2 2,625,927 - MPMX20_02486 0.66 -0.1 2,625,929 + MPMX20_02486 0.66 +6.1 2,625,937 - MPMX20_02486 0.67 +0.0 2,625,945 + MPMX20_02486 0.67 -1.0 2,625,972 - MPMX20_02486 0.70 -0.9 2,626,010 - MPMX20_02486 0.74 -0.2 2,626,020 - MPMX20_02486 0.75 -0.8 2,626,026 - MPMX20_02486 0.76 -0.3 2,626,049 - MPMX20_02486 0.78 +2.3 2,626,131 - MPMX20_02486 0.86 +0.8 2,626,133 + MPMX20_02486 0.87 +0.8 2,626,141 - MPMX20_02486 0.87 -1.3 2,626,146 + MPMX20_02486 0.88 +0.1 2,626,172 - +0.4 2,626,189 + -0.5 2,626,278 + -1.4 2,626,370 - -0.1 2,626,448 + +1.0 2,626,449 - -0.3 2,626,530 + +0.6 2,626,605 - MPMX20_02487 0.13 +0.9 2,626,628 - MPMX20_02487 0.14 -1.3 2,626,686 - MPMX20_02487 0.17 +2.3 2,626,800 + MPMX20_02487 0.23 +1.4 2,626,835 + MPMX20_02487 0.25 +1.4 2,626,854 + MPMX20_02487 0.26 -1.5 2,626,854 + MPMX20_02487 0.26 +1.1 2,626,862 - MPMX20_02487 0.26 +1.5 2,626,933 + MPMX20_02487 0.30 +1.5 2,627,059 + MPMX20_02487 0.36 +0.7 2,627,155 + MPMX20_02487 0.41 -0.9 2,627,160 + MPMX20_02487 0.42 +0.7 2,627,291 + MPMX20_02487 0.48 +0.6 2,627,391 - MPMX20_02487 0.54 +0.7 2,627,391 - MPMX20_02487 0.54 -0.7 2,627,391 - MPMX20_02487 0.54 -0.2 2,627,455 - MPMX20_02487 0.57 +0.4 2,627,455 - MPMX20_02487 0.57 +0.4 2,627,481 - MPMX20_02487 0.58 +0.1 2,627,483 - MPMX20_02487 0.58 +2.7 2,627,552 - MPMX20_02487 0.62 +0.1 2,627,563 - MPMX20_02487 0.62 +0.9 2,627,606 + MPMX20_02487 0.65 +0.4 2,627,616 + MPMX20_02487 0.65 -0.1 2,627,697 - MPMX20_02487 0.69 -0.4 2,627,762 - MPMX20_02487 0.73 +1.4 2,627,833 + MPMX20_02487 0.76 +0.5 2,627,833 + MPMX20_02487 0.76 +0.4 2,627,833 + MPMX20_02487 0.76 +0.7 2,627,833 + MPMX20_02487 0.76 +0.9 2,627,841 - MPMX20_02487 0.77 +2.7 2,627,873 + MPMX20_02487 0.79 -0.1 2,627,881 - MPMX20_02487 0.79 +0.7 2,627,901 + MPMX20_02487 0.80 +0.1 2,627,901 + MPMX20_02487 0.80 +1.0 2,627,901 + MPMX20_02487 0.80 -1.7 2,627,903 - MPMX20_02487 0.80 -0.1 2,627,903 - MPMX20_02487 0.80 +0.5 2,627,906 + MPMX20_02487 0.80 +0.1 2,627,935 + MPMX20_02487 0.82 +0.5 2,627,996 + MPMX20_02487 0.85 -0.1 2,628,013 + MPMX20_02487 0.86 +1.4 2,628,018 + MPMX20_02487 0.86 +1.0 2,628,026 - MPMX20_02487 0.86 +1.1 2,628,036 - MPMX20_02487 0.87 +0.9 2,628,096 + -0.5 2,628,102 - +2.4 2,628,140 - -0.3 2,628,156 + -1.2 2,628,171 + +0.4 2,628,181 + -0.6 2,628,194 - +1.3 2,628,194 - -2.0 2,628,202 - -1.9 2,628,263 + +0.1 2,628,263 + -0.7 2,628,263 + -0.5 2,628,263 + -0.5 2,628,263 + +3.3 2,628,263 + -0.6 2,628,263 + -0.5 2,628,271 - -1.0 2,628,271 - +1.1 2,628,271 - +0.4 2,628,284 + -2.2 2,628,284 + -0.0 2,628,308 + +0.5 2,628,320 + -1.4 2,628,421 + -0.3 2,628,421 + -1.8 2,628,612 + +1.3 2,628,623 + -0.2 2,628,631 - +0.6 2,628,631 - -2.5 2,628,631 - +0.3 2,628,658 - +0.7 2,628,660 + +0.4 2,628,667 - -0.3 2,628,685 + -1.7 2,628,690 + -1.4 2,628,697 + +1.7 2,628,698 - +0.8 2,628,698 - -0.2 2,628,698 - +1.5 2,628,705 - +0.4 2,628,801 - -1.4 2,628,820 - MPMX20_02488 0.10 +0.1 2,628,887 - MPMX20_02488 0.14 -1.4 2,628,887 - MPMX20_02488 0.14 +0.9 2,628,904 + MPMX20_02488 0.15 +0.7 2,628,920 + MPMX20_02488 0.15 -0.4 2,628,930 + MPMX20_02488 0.16 -0.9 2,628,930 + MPMX20_02488 0.16 +1.9 2,628,939 - MPMX20_02488 0.16 +0.4 2,628,942 + MPMX20_02488 0.17 -0.6 2,628,969 + MPMX20_02488 0.18 +0.9 2,628,974 + MPMX20_02488 0.18 -0.4 2,629,031 + MPMX20_02488 0.21 -1.1 2,629,087 - MPMX20_02488 0.24 -1.2 2,629,097 - MPMX20_02488 0.24 -1.1 2,629,114 + MPMX20_02488 0.25 -0.1 2,629,162 - MPMX20_02488 0.28 -0.6 2,629,162 - MPMX20_02488 0.28 -0.5 2,629,279 - MPMX20_02488 0.33 +1.1 2,629,280 + MPMX20_02488 0.33 +9.1 2,629,280 + MPMX20_02488 0.33 +0.7
Or see this region's nucleotide sequence