Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02471 and MPMX20_02472 are separated by 54 nucleotides MPMX20_02472 and MPMX20_02473 are separated by 166 nucleotides MPMX20_02473 and MPMX20_02474 are separated by 88 nucleotides
MPMX20_02471: MPMX20_02471 - Phage shock protein B, at 2,611,802 to 2,612,026
_02471
MPMX20_02472: MPMX20_02472 - Phage shock protein A, at 2,612,081 to 2,612,749
_02472
MPMX20_02473: MPMX20_02473 - Psp operon transcriptional activator, at 2,612,916 to 2,613,893
_02473
MPMX20_02474: MPMX20_02474 - Peptide transport periplasmic protein SapA, at 2,613,982 to 2,615,622
_02474
Position (kb)
2612
2613
2614 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2611.940 kb on - strand, within MPMX20_02471 at 2611.947 kb on + strand, within MPMX20_02471 at 2612.024 kb on + strand at 2612.026 kb on + strand at 2612.034 kb on - strand at 2612.038 kb on + strand at 2612.040 kb on + strand at 2612.046 kb on - strand at 2612.154 kb on - strand, within MPMX20_02472 at 2612.164 kb on + strand, within MPMX20_02472 at 2612.206 kb on - strand, within MPMX20_02472 at 2612.241 kb on - strand, within MPMX20_02472 at 2612.269 kb on + strand, within MPMX20_02472 at 2612.269 kb on + strand, within MPMX20_02472 at 2612.484 kb on + strand, within MPMX20_02472 at 2612.484 kb on + strand, within MPMX20_02472 at 2612.492 kb on - strand, within MPMX20_02472 at 2612.513 kb on - strand, within MPMX20_02472 at 2612.549 kb on - strand, within MPMX20_02472 at 2612.558 kb on + strand, within MPMX20_02472 at 2612.561 kb on - strand, within MPMX20_02472 at 2612.563 kb on + strand, within MPMX20_02472 at 2612.571 kb on - strand, within MPMX20_02472 at 2612.698 kb on - strand at 2612.698 kb on - strand at 2612.968 kb on + strand at 2612.986 kb on - strand at 2613.090 kb on - strand, within MPMX20_02473 at 2613.099 kb on + strand, within MPMX20_02473 at 2613.099 kb on + strand, within MPMX20_02473 at 2613.109 kb on - strand, within MPMX20_02473 at 2613.153 kb on + strand, within MPMX20_02473 at 2613.342 kb on + strand, within MPMX20_02473 at 2613.350 kb on - strand, within MPMX20_02473 at 2613.350 kb on - strand, within MPMX20_02473 at 2613.350 kb on - strand, within MPMX20_02473 at 2613.377 kb on + strand, within MPMX20_02473 at 2613.435 kb on + strand, within MPMX20_02473 at 2613.443 kb on - strand, within MPMX20_02473 at 2613.483 kb on + strand, within MPMX20_02473 at 2613.511 kb on - strand, within MPMX20_02473 at 2613.558 kb on - strand, within MPMX20_02473 at 2613.619 kb on + strand, within MPMX20_02473 at 2613.624 kb on + strand, within MPMX20_02473 at 2613.626 kb on - strand, within MPMX20_02473 at 2613.662 kb on + strand, within MPMX20_02473 at 2613.662 kb on + strand, within MPMX20_02473 at 2613.723 kb on - strand, within MPMX20_02473 at 2613.724 kb on - strand, within MPMX20_02473 at 2613.724 kb on - strand, within MPMX20_02473 at 2613.727 kb on + strand, within MPMX20_02473 at 2613.766 kb on + strand, within MPMX20_02473 at 2613.780 kb on - strand, within MPMX20_02473 at 2613.791 kb on + strand, within MPMX20_02473 at 2613.793 kb on + strand, within MPMX20_02473 at 2613.793 kb on + strand, within MPMX20_02473 at 2613.793 kb on + strand, within MPMX20_02473 at 2613.800 kb on - strand at 2613.801 kb on - strand at 2613.801 kb on - strand at 2613.857 kb on + strand at 2613.905 kb on - strand at 2613.905 kb on - strand at 2613.905 kb on - strand at 2613.941 kb on + strand at 2613.941 kb on + strand at 2613.947 kb on - strand at 2614.018 kb on - strand at 2614.020 kb on + strand at 2614.109 kb on - strand at 2614.115 kb on - strand at 2614.115 kb on - strand at 2614.157 kb on + strand, within MPMX20_02474 at 2614.171 kb on + strand, within MPMX20_02474 at 2614.243 kb on + strand, within MPMX20_02474 at 2614.304 kb on + strand, within MPMX20_02474 at 2614.446 kb on + strand, within MPMX20_02474 at 2614.507 kb on + strand, within MPMX20_02474 at 2614.530 kb on - strand, within MPMX20_02474 at 2614.553 kb on - strand, within MPMX20_02474 at 2614.858 kb on + strand, within MPMX20_02474 at 2614.863 kb on + strand, within MPMX20_02474 at 2614.866 kb on - strand, within MPMX20_02474
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 2,611,940 - MPMX20_02471 0.61 -0.6 2,611,947 + MPMX20_02471 0.64 -1.2 2,612,024 + -0.7 2,612,026 + -0.1 2,612,034 - -0.5 2,612,038 + -0.3 2,612,040 + +0.8 2,612,046 - +4.1 2,612,154 - MPMX20_02472 0.11 +0.3 2,612,164 + MPMX20_02472 0.12 +0.1 2,612,206 - MPMX20_02472 0.19 +0.3 2,612,241 - MPMX20_02472 0.24 -1.6 2,612,269 + MPMX20_02472 0.28 +0.4 2,612,269 + MPMX20_02472 0.28 -0.4 2,612,484 + MPMX20_02472 0.60 +1.7 2,612,484 + MPMX20_02472 0.60 -0.7 2,612,492 - MPMX20_02472 0.61 -1.3 2,612,513 - MPMX20_02472 0.65 -2.4 2,612,549 - MPMX20_02472 0.70 -1.5 2,612,558 + MPMX20_02472 0.71 +1.1 2,612,561 - MPMX20_02472 0.72 -0.2 2,612,563 + MPMX20_02472 0.72 -1.0 2,612,571 - MPMX20_02472 0.73 -2.7 2,612,698 - -0.5 2,612,698 - +0.2 2,612,968 + +1.0 2,612,986 - +1.1 2,613,090 - MPMX20_02473 0.18 -0.2 2,613,099 + MPMX20_02473 0.19 -0.1 2,613,099 + MPMX20_02473 0.19 -0.8 2,613,109 - MPMX20_02473 0.20 -0.1 2,613,153 + MPMX20_02473 0.24 -0.9 2,613,342 + MPMX20_02473 0.44 -0.9 2,613,350 - MPMX20_02473 0.44 +0.4 2,613,350 - MPMX20_02473 0.44 -0.0 2,613,350 - MPMX20_02473 0.44 -1.0 2,613,377 + MPMX20_02473 0.47 -0.3 2,613,435 + MPMX20_02473 0.53 -1.3 2,613,443 - MPMX20_02473 0.54 +0.9 2,613,483 + MPMX20_02473 0.58 -0.0 2,613,511 - MPMX20_02473 0.61 -0.8 2,613,558 - MPMX20_02473 0.66 -0.2 2,613,619 + MPMX20_02473 0.72 +0.3 2,613,624 + MPMX20_02473 0.72 -1.3 2,613,626 - MPMX20_02473 0.73 +2.7 2,613,662 + MPMX20_02473 0.76 +0.6 2,613,662 + MPMX20_02473 0.76 -0.4 2,613,723 - MPMX20_02473 0.83 -1.0 2,613,724 - MPMX20_02473 0.83 -0.2 2,613,724 - MPMX20_02473 0.83 -0.0 2,613,727 + MPMX20_02473 0.83 +0.3 2,613,766 + MPMX20_02473 0.87 -0.9 2,613,780 - MPMX20_02473 0.88 -1.0 2,613,791 + MPMX20_02473 0.89 -0.4 2,613,793 + MPMX20_02473 0.90 +0.1 2,613,793 + MPMX20_02473 0.90 +1.7 2,613,793 + MPMX20_02473 0.90 +0.7 2,613,800 - +1.6 2,613,801 - -0.4 2,613,801 - -0.5 2,613,857 + +1.2 2,613,905 - +0.1 2,613,905 - -0.7 2,613,905 - -0.3 2,613,941 + -0.4 2,613,941 + -0.7 2,613,947 - -0.2 2,614,018 - +0.7 2,614,020 + +1.0 2,614,109 - +1.9 2,614,115 - +1.5 2,614,115 - -0.7 2,614,157 + MPMX20_02474 0.11 +1.1 2,614,171 + MPMX20_02474 0.12 +0.1 2,614,243 + MPMX20_02474 0.16 +0.4 2,614,304 + MPMX20_02474 0.20 -0.3 2,614,446 + MPMX20_02474 0.28 -0.1 2,614,507 + MPMX20_02474 0.32 +1.2 2,614,530 - MPMX20_02474 0.33 +2.1 2,614,553 - MPMX20_02474 0.35 +2.0 2,614,858 + MPMX20_02474 0.53 +1.7 2,614,863 + MPMX20_02474 0.54 +0.9 2,614,866 - MPMX20_02474 0.54 -0.4
Or see this region's nucleotide sequence