Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02473

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02471 and MPMX20_02472 are separated by 54 nucleotidesMPMX20_02472 and MPMX20_02473 are separated by 166 nucleotidesMPMX20_02473 and MPMX20_02474 are separated by 88 nucleotides MPMX20_02471: MPMX20_02471 - Phage shock protein B, at 2,611,802 to 2,612,026 _02471 MPMX20_02472: MPMX20_02472 - Phage shock protein A, at 2,612,081 to 2,612,749 _02472 MPMX20_02473: MPMX20_02473 - Psp operon transcriptional activator, at 2,612,916 to 2,613,893 _02473 MPMX20_02474: MPMX20_02474 - Peptide transport periplasmic protein SapA, at 2,613,982 to 2,615,622 _02474 Position (kb) 2612 2613 2614Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2611.940 kb on - strand, within MPMX20_02471at 2611.947 kb on + strand, within MPMX20_02471at 2612.024 kb on + strandat 2612.026 kb on + strandat 2612.034 kb on - strandat 2612.038 kb on + strandat 2612.040 kb on + strandat 2612.046 kb on - strandat 2612.154 kb on - strand, within MPMX20_02472at 2612.164 kb on + strand, within MPMX20_02472at 2612.206 kb on - strand, within MPMX20_02472at 2612.241 kb on - strand, within MPMX20_02472at 2612.269 kb on + strand, within MPMX20_02472at 2612.269 kb on + strand, within MPMX20_02472at 2612.484 kb on + strand, within MPMX20_02472at 2612.484 kb on + strand, within MPMX20_02472at 2612.492 kb on - strand, within MPMX20_02472at 2612.513 kb on - strand, within MPMX20_02472at 2612.549 kb on - strand, within MPMX20_02472at 2612.558 kb on + strand, within MPMX20_02472at 2612.561 kb on - strand, within MPMX20_02472at 2612.563 kb on + strand, within MPMX20_02472at 2612.571 kb on - strand, within MPMX20_02472at 2612.698 kb on - strandat 2612.698 kb on - strandat 2612.968 kb on + strandat 2612.986 kb on - strandat 2613.090 kb on - strand, within MPMX20_02473at 2613.099 kb on + strand, within MPMX20_02473at 2613.099 kb on + strand, within MPMX20_02473at 2613.109 kb on - strand, within MPMX20_02473at 2613.153 kb on + strand, within MPMX20_02473at 2613.342 kb on + strand, within MPMX20_02473at 2613.350 kb on - strand, within MPMX20_02473at 2613.350 kb on - strand, within MPMX20_02473at 2613.350 kb on - strand, within MPMX20_02473at 2613.377 kb on + strand, within MPMX20_02473at 2613.435 kb on + strand, within MPMX20_02473at 2613.443 kb on - strand, within MPMX20_02473at 2613.483 kb on + strand, within MPMX20_02473at 2613.511 kb on - strand, within MPMX20_02473at 2613.558 kb on - strand, within MPMX20_02473at 2613.619 kb on + strand, within MPMX20_02473at 2613.624 kb on + strand, within MPMX20_02473at 2613.626 kb on - strand, within MPMX20_02473at 2613.662 kb on + strand, within MPMX20_02473at 2613.662 kb on + strand, within MPMX20_02473at 2613.723 kb on - strand, within MPMX20_02473at 2613.724 kb on - strand, within MPMX20_02473at 2613.724 kb on - strand, within MPMX20_02473at 2613.727 kb on + strand, within MPMX20_02473at 2613.766 kb on + strand, within MPMX20_02473at 2613.780 kb on - strand, within MPMX20_02473at 2613.791 kb on + strand, within MPMX20_02473at 2613.793 kb on + strand, within MPMX20_02473at 2613.793 kb on + strand, within MPMX20_02473at 2613.793 kb on + strand, within MPMX20_02473at 2613.800 kb on - strandat 2613.801 kb on - strandat 2613.801 kb on - strandat 2613.857 kb on + strandat 2613.905 kb on - strandat 2613.905 kb on - strandat 2613.905 kb on - strandat 2613.941 kb on + strandat 2613.941 kb on + strandat 2613.947 kb on - strandat 2614.018 kb on - strandat 2614.020 kb on + strandat 2614.109 kb on - strandat 2614.115 kb on - strandat 2614.115 kb on - strandat 2614.157 kb on + strand, within MPMX20_02474at 2614.171 kb on + strand, within MPMX20_02474at 2614.243 kb on + strand, within MPMX20_02474at 2614.304 kb on + strand, within MPMX20_02474at 2614.446 kb on + strand, within MPMX20_02474at 2614.507 kb on + strand, within MPMX20_02474at 2614.530 kb on - strand, within MPMX20_02474at 2614.553 kb on - strand, within MPMX20_02474at 2614.858 kb on + strand, within MPMX20_02474at 2614.863 kb on + strand, within MPMX20_02474at 2614.866 kb on - strand, within MPMX20_02474

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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2,611,940 - MPMX20_02471 0.61 -0.6
2,611,947 + MPMX20_02471 0.64 -1.2
2,612,024 + -0.7
2,612,026 + -0.1
2,612,034 - -0.5
2,612,038 + -0.3
2,612,040 + +0.8
2,612,046 - +4.1
2,612,154 - MPMX20_02472 0.11 +0.3
2,612,164 + MPMX20_02472 0.12 +0.1
2,612,206 - MPMX20_02472 0.19 +0.3
2,612,241 - MPMX20_02472 0.24 -1.6
2,612,269 + MPMX20_02472 0.28 +0.4
2,612,269 + MPMX20_02472 0.28 -0.4
2,612,484 + MPMX20_02472 0.60 +1.7
2,612,484 + MPMX20_02472 0.60 -0.7
2,612,492 - MPMX20_02472 0.61 -1.3
2,612,513 - MPMX20_02472 0.65 -2.4
2,612,549 - MPMX20_02472 0.70 -1.5
2,612,558 + MPMX20_02472 0.71 +1.1
2,612,561 - MPMX20_02472 0.72 -0.2
2,612,563 + MPMX20_02472 0.72 -1.0
2,612,571 - MPMX20_02472 0.73 -2.7
2,612,698 - -0.5
2,612,698 - +0.2
2,612,968 + +1.0
2,612,986 - +1.1
2,613,090 - MPMX20_02473 0.18 -0.2
2,613,099 + MPMX20_02473 0.19 -0.1
2,613,099 + MPMX20_02473 0.19 -0.8
2,613,109 - MPMX20_02473 0.20 -0.1
2,613,153 + MPMX20_02473 0.24 -0.9
2,613,342 + MPMX20_02473 0.44 -0.9
2,613,350 - MPMX20_02473 0.44 +0.4
2,613,350 - MPMX20_02473 0.44 -0.0
2,613,350 - MPMX20_02473 0.44 -1.0
2,613,377 + MPMX20_02473 0.47 -0.3
2,613,435 + MPMX20_02473 0.53 -1.3
2,613,443 - MPMX20_02473 0.54 +0.9
2,613,483 + MPMX20_02473 0.58 -0.0
2,613,511 - MPMX20_02473 0.61 -0.8
2,613,558 - MPMX20_02473 0.66 -0.2
2,613,619 + MPMX20_02473 0.72 +0.3
2,613,624 + MPMX20_02473 0.72 -1.3
2,613,626 - MPMX20_02473 0.73 +2.7
2,613,662 + MPMX20_02473 0.76 +0.6
2,613,662 + MPMX20_02473 0.76 -0.4
2,613,723 - MPMX20_02473 0.83 -1.0
2,613,724 - MPMX20_02473 0.83 -0.2
2,613,724 - MPMX20_02473 0.83 -0.0
2,613,727 + MPMX20_02473 0.83 +0.3
2,613,766 + MPMX20_02473 0.87 -0.9
2,613,780 - MPMX20_02473 0.88 -1.0
2,613,791 + MPMX20_02473 0.89 -0.4
2,613,793 + MPMX20_02473 0.90 +0.1
2,613,793 + MPMX20_02473 0.90 +1.7
2,613,793 + MPMX20_02473 0.90 +0.7
2,613,800 - +1.6
2,613,801 - -0.4
2,613,801 - -0.5
2,613,857 + +1.2
2,613,905 - +0.1
2,613,905 - -0.7
2,613,905 - -0.3
2,613,941 + -0.4
2,613,941 + -0.7
2,613,947 - -0.2
2,614,018 - +0.7
2,614,020 + +1.0
2,614,109 - +1.9
2,614,115 - +1.5
2,614,115 - -0.7
2,614,157 + MPMX20_02474 0.11 +1.1
2,614,171 + MPMX20_02474 0.12 +0.1
2,614,243 + MPMX20_02474 0.16 +0.4
2,614,304 + MPMX20_02474 0.20 -0.3
2,614,446 + MPMX20_02474 0.28 -0.1
2,614,507 + MPMX20_02474 0.32 +1.2
2,614,530 - MPMX20_02474 0.33 +2.1
2,614,553 - MPMX20_02474 0.35 +2.0
2,614,858 + MPMX20_02474 0.53 +1.7
2,614,863 + MPMX20_02474 0.54 +0.9
2,614,866 - MPMX20_02474 0.54 -0.4

Or see this region's nucleotide sequence