Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02451 and MPMX20_02452 are separated by 107 nucleotides MPMX20_02452 and MPMX20_02453 are separated by 332 nucleotides MPMX20_02453 and MPMX20_02454 are separated by 35 nucleotides
MPMX20_02451: MPMX20_02451 - L-Ala-D/L-Glu epimerase, at 2,589,862 to 2,590,827
_02451
MPMX20_02452: MPMX20_02452 - Thiol peroxidase, at 2,590,935 to 2,591,441
_02452
MPMX20_02453: MPMX20_02453 - hypothetical protein, at 2,591,774 to 2,592,982
_02453
MPMX20_02454: MPMX20_02454 - Transcriptional regulatory protein TyrR, at 2,593,018 to 2,594,559
_02454
Position (kb)
2591
2592
2593 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.812 kb on + strand at 2590.820 kb on - strand at 2590.836 kb on + strand at 2590.874 kb on + strand at 2590.888 kb on + strand at 2590.888 kb on + strand at 2590.896 kb on - strand at 2590.898 kb on + strand at 2590.901 kb on - strand at 2591.012 kb on + strand, within MPMX20_02452 at 2591.014 kb on + strand, within MPMX20_02452 at 2591.053 kb on - strand, within MPMX20_02452 at 2591.062 kb on - strand, within MPMX20_02452 at 2591.079 kb on + strand, within MPMX20_02452 at 2591.111 kb on + strand, within MPMX20_02452 at 2591.154 kb on + strand, within MPMX20_02452 at 2591.159 kb on + strand, within MPMX20_02452 at 2591.167 kb on + strand, within MPMX20_02452 at 2591.167 kb on + strand, within MPMX20_02452 at 2591.167 kb on + strand, within MPMX20_02452 at 2591.175 kb on - strand, within MPMX20_02452 at 2591.202 kb on + strand, within MPMX20_02452 at 2591.210 kb on - strand, within MPMX20_02452 at 2591.221 kb on + strand, within MPMX20_02452 at 2591.224 kb on - strand, within MPMX20_02452 at 2591.229 kb on + strand, within MPMX20_02452 at 2591.234 kb on + strand, within MPMX20_02452 at 2591.242 kb on + strand, within MPMX20_02452 at 2591.251 kb on + strand, within MPMX20_02452 at 2591.259 kb on - strand, within MPMX20_02452 at 2591.274 kb on - strand, within MPMX20_02452 at 2591.328 kb on - strand, within MPMX20_02452 at 2591.335 kb on + strand, within MPMX20_02452 at 2591.337 kb on + strand, within MPMX20_02452 at 2591.337 kb on + strand, within MPMX20_02452 at 2591.337 kb on + strand, within MPMX20_02452 at 2591.337 kb on + strand, within MPMX20_02452 at 2591.337 kb on + strand, within MPMX20_02452 at 2591.337 kb on + strand, within MPMX20_02452 at 2591.337 kb on + strand, within MPMX20_02452 at 2591.337 kb on + strand, within MPMX20_02452 at 2591.342 kb on + strand, within MPMX20_02452 at 2591.343 kb on - strand, within MPMX20_02452 at 2591.345 kb on - strand, within MPMX20_02452 at 2591.345 kb on - strand, within MPMX20_02452 at 2591.345 kb on - strand, within MPMX20_02452 at 2591.345 kb on - strand, within MPMX20_02452 at 2591.367 kb on + strand, within MPMX20_02452 at 2591.367 kb on + strand, within MPMX20_02452 at 2591.405 kb on + strand at 2591.405 kb on + strand at 2591.405 kb on + strand at 2591.457 kb on + strand at 2591.457 kb on + strand at 2591.457 kb on + strand at 2591.511 kb on + strand at 2591.511 kb on + strand at 2591.517 kb on + strand at 2591.600 kb on + strand at 2591.808 kb on - strand at 2591.839 kb on - strand at 2591.856 kb on - strand at 2591.856 kb on - strand at 2592.035 kb on + strand, within MPMX20_02453 at 2592.038 kb on - strand, within MPMX20_02453 at 2592.038 kb on - strand, within MPMX20_02453 at 2592.043 kb on - strand, within MPMX20_02453 at 2592.047 kb on + strand, within MPMX20_02453 at 2592.086 kb on + strand, within MPMX20_02453 at 2592.187 kb on - strand, within MPMX20_02453 at 2592.230 kb on + strand, within MPMX20_02453 at 2592.230 kb on + strand, within MPMX20_02453 at 2592.230 kb on + strand, within MPMX20_02453 at 2592.238 kb on - strand, within MPMX20_02453 at 2592.238 kb on - strand, within MPMX20_02453 at 2592.280 kb on + strand, within MPMX20_02453 at 2592.378 kb on - strand, within MPMX20_02453 at 2592.384 kb on + strand, within MPMX20_02453 at 2592.384 kb on + strand, within MPMX20_02453 at 2592.394 kb on + strand, within MPMX20_02453 at 2592.501 kb on + strand, within MPMX20_02453 at 2592.576 kb on - strand, within MPMX20_02453 at 2592.578 kb on - strand, within MPMX20_02453 at 2592.599 kb on - strand, within MPMX20_02453 at 2592.605 kb on - strand, within MPMX20_02453 at 2592.659 kb on - strand, within MPMX20_02453 at 2592.661 kb on + strand, within MPMX20_02453 at 2592.724 kb on - strand, within MPMX20_02453 at 2592.724 kb on - strand, within MPMX20_02453 at 2592.744 kb on + strand, within MPMX20_02453 at 2592.866 kb on - strand at 2592.868 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.876 kb on - strand at 2592.876 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.898 kb on + strand at 2592.906 kb on - strand at 2592.928 kb on + strand at 2592.940 kb on + strand at 2592.948 kb on - strand at 2592.948 kb on - strand at 2593.028 kb on + strand at 2593.036 kb on - strand at 2593.053 kb on + strand at 2593.104 kb on + strand at 2593.104 kb on + strand at 2593.138 kb on + strand at 2593.194 kb on + strand, within MPMX20_02454 at 2593.194 kb on + strand, within MPMX20_02454 at 2593.202 kb on + strand, within MPMX20_02454 at 2593.273 kb on - strand, within MPMX20_02454 at 2593.323 kb on + strand, within MPMX20_02454 at 2593.358 kb on + strand, within MPMX20_02454 at 2593.366 kb on - strand, within MPMX20_02454 at 2593.469 kb on - strand, within MPMX20_02454 at 2593.476 kb on - strand, within MPMX20_02454 at 2593.494 kb on - strand, within MPMX20_02454 at 2593.497 kb on - strand, within MPMX20_02454 at 2593.555 kb on - strand, within MPMX20_02454 at 2593.682 kb on - strand, within MPMX20_02454 at 2593.685 kb on + strand, within MPMX20_02454 at 2593.685 kb on + strand, within MPMX20_02454 at 2593.685 kb on + strand, within MPMX20_02454 at 2593.693 kb on - strand, within MPMX20_02454 at 2593.693 kb on - strand, within MPMX20_02454 at 2593.693 kb on - strand, within MPMX20_02454 at 2593.774 kb on + strand, within MPMX20_02454 at 2593.945 kb on - strand, within MPMX20_02454
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 2,590,812 + +1.7 2,590,812 + -0.5 2,590,812 + -0.8 2,590,812 + +0.4 2,590,812 + -1.7 2,590,812 + -0.5 2,590,820 - +0.7 2,590,836 + -0.1 2,590,874 + +0.4 2,590,888 + +2.3 2,590,888 + +1.7 2,590,896 - +0.5 2,590,898 + -0.4 2,590,901 - +1.0 2,591,012 + MPMX20_02452 0.15 -0.1 2,591,014 + MPMX20_02452 0.16 -1.4 2,591,053 - MPMX20_02452 0.23 +1.7 2,591,062 - MPMX20_02452 0.25 +0.9 2,591,079 + MPMX20_02452 0.28 -0.1 2,591,111 + MPMX20_02452 0.35 +0.7 2,591,154 + MPMX20_02452 0.43 -3.0 2,591,159 + MPMX20_02452 0.44 +0.6 2,591,167 + MPMX20_02452 0.46 -0.6 2,591,167 + MPMX20_02452 0.46 +0.7 2,591,167 + MPMX20_02452 0.46 -0.1 2,591,175 - MPMX20_02452 0.47 -2.0 2,591,202 + MPMX20_02452 0.53 -0.7 2,591,210 - MPMX20_02452 0.54 +0.2 2,591,221 + MPMX20_02452 0.56 +0.7 2,591,224 - MPMX20_02452 0.57 -2.4 2,591,229 + MPMX20_02452 0.58 +0.4 2,591,234 + MPMX20_02452 0.59 +1.1 2,591,242 + MPMX20_02452 0.61 +1.4 2,591,251 + MPMX20_02452 0.62 +1.7 2,591,259 - MPMX20_02452 0.64 -0.9 2,591,274 - MPMX20_02452 0.67 +0.7 2,591,328 - MPMX20_02452 0.78 +1.7 2,591,335 + MPMX20_02452 0.79 +1.0 2,591,337 + MPMX20_02452 0.79 +1.1 2,591,337 + MPMX20_02452 0.79 +0.4 2,591,337 + MPMX20_02452 0.79 -1.7 2,591,337 + MPMX20_02452 0.79 -0.1 2,591,337 + MPMX20_02452 0.79 -0.1 2,591,337 + MPMX20_02452 0.79 +0.4 2,591,337 + MPMX20_02452 0.79 -1.3 2,591,337 + MPMX20_02452 0.79 +0.3 2,591,342 + MPMX20_02452 0.80 +1.1 2,591,343 - MPMX20_02452 0.80 +0.5 2,591,345 - MPMX20_02452 0.81 +1.7 2,591,345 - MPMX20_02452 0.81 -0.5 2,591,345 - MPMX20_02452 0.81 +0.7 2,591,345 - MPMX20_02452 0.81 +0.7 2,591,367 + MPMX20_02452 0.85 -0.6 2,591,367 + MPMX20_02452 0.85 -1.1 2,591,405 + -1.4 2,591,405 + -1.0 2,591,405 + +0.0 2,591,457 + +0.4 2,591,457 + -1.1 2,591,457 + -2.9 2,591,511 + +0.6 2,591,511 + +1.5 2,591,517 + +1.7 2,591,600 + +1.4 2,591,808 - -0.1 2,591,839 - -0.8 2,591,856 - +2.8 2,591,856 - -0.5 2,592,035 + MPMX20_02453 0.22 -0.3 2,592,038 - MPMX20_02453 0.22 -1.4 2,592,038 - MPMX20_02453 0.22 -0.2 2,592,043 - MPMX20_02453 0.22 -1.6 2,592,047 + MPMX20_02453 0.23 +1.2 2,592,086 + MPMX20_02453 0.26 -0.1 2,592,187 - MPMX20_02453 0.34 -1.4 2,592,230 + MPMX20_02453 0.38 +1.0 2,592,230 + MPMX20_02453 0.38 -0.7 2,592,230 + MPMX20_02453 0.38 -2.0 2,592,238 - MPMX20_02453 0.38 -0.6 2,592,238 - MPMX20_02453 0.38 -0.2 2,592,280 + MPMX20_02453 0.42 +1.7 2,592,378 - MPMX20_02453 0.50 -2.4 2,592,384 + MPMX20_02453 0.50 -0.6 2,592,384 + MPMX20_02453 0.50 -0.0 2,592,394 + MPMX20_02453 0.51 -1.0 2,592,501 + MPMX20_02453 0.60 +0.3 2,592,576 - MPMX20_02453 0.66 +0.3 2,592,578 - MPMX20_02453 0.67 +0.4 2,592,599 - MPMX20_02453 0.68 +0.0 2,592,605 - MPMX20_02453 0.69 -0.8 2,592,659 - MPMX20_02453 0.73 -1.7 2,592,661 + MPMX20_02453 0.73 -0.3 2,592,724 - MPMX20_02453 0.79 -1.1 2,592,724 - MPMX20_02453 0.79 +0.1 2,592,744 + MPMX20_02453 0.80 -0.4 2,592,866 - +3.4 2,592,868 + +0.5 2,592,870 + +0.1 2,592,870 + -0.4 2,592,870 + +0.3 2,592,870 + -1.1 2,592,870 + +0.9 2,592,870 + +0.0 2,592,870 + -0.4 2,592,870 + -1.5 2,592,870 + +1.7 2,592,870 + +0.4 2,592,870 + +1.7 2,592,870 + +1.4 2,592,876 - +0.3 2,592,876 - +0.4 2,592,878 - -0.7 2,592,878 - -0.7 2,592,878 - +0.4 2,592,878 - -1.3 2,592,878 - +0.7 2,592,878 - -1.3 2,592,878 - +0.6 2,592,878 - +2.1 2,592,898 + -2.0 2,592,906 - -1.4 2,592,928 + -0.0 2,592,940 + +0.2 2,592,948 - -0.5 2,592,948 - +1.5 2,593,028 + -0.3 2,593,036 - +2.5 2,593,053 + +3.3 2,593,104 + +0.3 2,593,104 + -1.2 2,593,138 + -0.6 2,593,194 + MPMX20_02454 0.11 +0.1 2,593,194 + MPMX20_02454 0.11 -0.7 2,593,202 + MPMX20_02454 0.12 -1.0 2,593,273 - MPMX20_02454 0.17 +1.7 2,593,323 + MPMX20_02454 0.20 -0.8 2,593,358 + MPMX20_02454 0.22 +1.1 2,593,366 - MPMX20_02454 0.23 -1.0 2,593,469 - MPMX20_02454 0.29 +0.3 2,593,476 - MPMX20_02454 0.30 -1.4 2,593,494 - MPMX20_02454 0.31 +0.3 2,593,497 - MPMX20_02454 0.31 +0.7 2,593,555 - MPMX20_02454 0.35 +4.0 2,593,682 - MPMX20_02454 0.43 -2.4 2,593,685 + MPMX20_02454 0.43 +0.1 2,593,685 + MPMX20_02454 0.43 +1.1 2,593,685 + MPMX20_02454 0.43 -0.1 2,593,693 - MPMX20_02454 0.44 -0.2 2,593,693 - MPMX20_02454 0.44 +1.0 2,593,693 - MPMX20_02454 0.44 +0.3 2,593,774 + MPMX20_02454 0.49 -0.8 2,593,945 - MPMX20_02454 0.60 -1.6
Or see this region's nucleotide sequence