Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02453

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02451 and MPMX20_02452 are separated by 107 nucleotidesMPMX20_02452 and MPMX20_02453 are separated by 332 nucleotidesMPMX20_02453 and MPMX20_02454 are separated by 35 nucleotides MPMX20_02451: MPMX20_02451 - L-Ala-D/L-Glu epimerase, at 2,589,862 to 2,590,827 _02451 MPMX20_02452: MPMX20_02452 - Thiol peroxidase, at 2,590,935 to 2,591,441 _02452 MPMX20_02453: MPMX20_02453 - hypothetical protein, at 2,591,774 to 2,592,982 _02453 MPMX20_02454: MPMX20_02454 - Transcriptional regulatory protein TyrR, at 2,593,018 to 2,594,559 _02454 Position (kb) 2591 2592 2593Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.820 kb on - strandat 2590.836 kb on + strandat 2590.874 kb on + strandat 2590.888 kb on + strandat 2590.888 kb on + strandat 2590.896 kb on - strandat 2590.898 kb on + strandat 2590.901 kb on - strandat 2591.012 kb on + strand, within MPMX20_02452at 2591.014 kb on + strand, within MPMX20_02452at 2591.053 kb on - strand, within MPMX20_02452at 2591.062 kb on - strand, within MPMX20_02452at 2591.079 kb on + strand, within MPMX20_02452at 2591.111 kb on + strand, within MPMX20_02452at 2591.154 kb on + strand, within MPMX20_02452at 2591.159 kb on + strand, within MPMX20_02452at 2591.167 kb on + strand, within MPMX20_02452at 2591.167 kb on + strand, within MPMX20_02452at 2591.167 kb on + strand, within MPMX20_02452at 2591.175 kb on - strand, within MPMX20_02452at 2591.202 kb on + strand, within MPMX20_02452at 2591.210 kb on - strand, within MPMX20_02452at 2591.221 kb on + strand, within MPMX20_02452at 2591.224 kb on - strand, within MPMX20_02452at 2591.229 kb on + strand, within MPMX20_02452at 2591.234 kb on + strand, within MPMX20_02452at 2591.242 kb on + strand, within MPMX20_02452at 2591.251 kb on + strand, within MPMX20_02452at 2591.259 kb on - strand, within MPMX20_02452at 2591.274 kb on - strand, within MPMX20_02452at 2591.328 kb on - strand, within MPMX20_02452at 2591.335 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.342 kb on + strand, within MPMX20_02452at 2591.343 kb on - strand, within MPMX20_02452at 2591.345 kb on - strand, within MPMX20_02452at 2591.345 kb on - strand, within MPMX20_02452at 2591.345 kb on - strand, within MPMX20_02452at 2591.345 kb on - strand, within MPMX20_02452at 2591.367 kb on + strand, within MPMX20_02452at 2591.367 kb on + strand, within MPMX20_02452at 2591.405 kb on + strandat 2591.405 kb on + strandat 2591.405 kb on + strandat 2591.457 kb on + strandat 2591.457 kb on + strandat 2591.457 kb on + strandat 2591.511 kb on + strandat 2591.511 kb on + strandat 2591.517 kb on + strandat 2591.600 kb on + strandat 2591.808 kb on - strandat 2591.839 kb on - strandat 2591.856 kb on - strandat 2591.856 kb on - strandat 2592.035 kb on + strand, within MPMX20_02453at 2592.038 kb on - strand, within MPMX20_02453at 2592.038 kb on - strand, within MPMX20_02453at 2592.043 kb on - strand, within MPMX20_02453at 2592.047 kb on + strand, within MPMX20_02453at 2592.086 kb on + strand, within MPMX20_02453at 2592.187 kb on - strand, within MPMX20_02453at 2592.230 kb on + strand, within MPMX20_02453at 2592.230 kb on + strand, within MPMX20_02453at 2592.230 kb on + strand, within MPMX20_02453at 2592.238 kb on - strand, within MPMX20_02453at 2592.238 kb on - strand, within MPMX20_02453at 2592.280 kb on + strand, within MPMX20_02453at 2592.378 kb on - strand, within MPMX20_02453at 2592.384 kb on + strand, within MPMX20_02453at 2592.384 kb on + strand, within MPMX20_02453at 2592.394 kb on + strand, within MPMX20_02453at 2592.501 kb on + strand, within MPMX20_02453at 2592.576 kb on - strand, within MPMX20_02453at 2592.578 kb on - strand, within MPMX20_02453at 2592.599 kb on - strand, within MPMX20_02453at 2592.605 kb on - strand, within MPMX20_02453at 2592.659 kb on - strand, within MPMX20_02453at 2592.661 kb on + strand, within MPMX20_02453at 2592.724 kb on - strand, within MPMX20_02453at 2592.724 kb on - strand, within MPMX20_02453at 2592.744 kb on + strand, within MPMX20_02453at 2592.866 kb on - strandat 2592.868 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.876 kb on - strandat 2592.876 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.898 kb on + strandat 2592.906 kb on - strandat 2592.928 kb on + strandat 2592.940 kb on + strandat 2592.948 kb on - strandat 2592.948 kb on - strandat 2593.028 kb on + strandat 2593.036 kb on - strandat 2593.053 kb on + strandat 2593.104 kb on + strandat 2593.104 kb on + strandat 2593.138 kb on + strandat 2593.194 kb on + strand, within MPMX20_02454at 2593.194 kb on + strand, within MPMX20_02454at 2593.202 kb on + strand, within MPMX20_02454at 2593.273 kb on - strand, within MPMX20_02454at 2593.323 kb on + strand, within MPMX20_02454at 2593.358 kb on + strand, within MPMX20_02454at 2593.366 kb on - strand, within MPMX20_02454at 2593.469 kb on - strand, within MPMX20_02454at 2593.476 kb on - strand, within MPMX20_02454at 2593.494 kb on - strand, within MPMX20_02454at 2593.497 kb on - strand, within MPMX20_02454at 2593.555 kb on - strand, within MPMX20_02454at 2593.682 kb on - strand, within MPMX20_02454at 2593.685 kb on + strand, within MPMX20_02454at 2593.685 kb on + strand, within MPMX20_02454at 2593.685 kb on + strand, within MPMX20_02454at 2593.693 kb on - strand, within MPMX20_02454at 2593.693 kb on - strand, within MPMX20_02454at 2593.693 kb on - strand, within MPMX20_02454at 2593.774 kb on + strand, within MPMX20_02454at 2593.945 kb on - strand, within MPMX20_02454

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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2,590,812 + +1.7
2,590,812 + -0.5
2,590,812 + -0.8
2,590,812 + +0.4
2,590,812 + -1.7
2,590,812 + -0.5
2,590,820 - +0.7
2,590,836 + -0.1
2,590,874 + +0.4
2,590,888 + +2.3
2,590,888 + +1.7
2,590,896 - +0.5
2,590,898 + -0.4
2,590,901 - +1.0
2,591,012 + MPMX20_02452 0.15 -0.1
2,591,014 + MPMX20_02452 0.16 -1.4
2,591,053 - MPMX20_02452 0.23 +1.7
2,591,062 - MPMX20_02452 0.25 +0.9
2,591,079 + MPMX20_02452 0.28 -0.1
2,591,111 + MPMX20_02452 0.35 +0.7
2,591,154 + MPMX20_02452 0.43 -3.0
2,591,159 + MPMX20_02452 0.44 +0.6
2,591,167 + MPMX20_02452 0.46 -0.6
2,591,167 + MPMX20_02452 0.46 +0.7
2,591,167 + MPMX20_02452 0.46 -0.1
2,591,175 - MPMX20_02452 0.47 -2.0
2,591,202 + MPMX20_02452 0.53 -0.7
2,591,210 - MPMX20_02452 0.54 +0.2
2,591,221 + MPMX20_02452 0.56 +0.7
2,591,224 - MPMX20_02452 0.57 -2.4
2,591,229 + MPMX20_02452 0.58 +0.4
2,591,234 + MPMX20_02452 0.59 +1.1
2,591,242 + MPMX20_02452 0.61 +1.4
2,591,251 + MPMX20_02452 0.62 +1.7
2,591,259 - MPMX20_02452 0.64 -0.9
2,591,274 - MPMX20_02452 0.67 +0.7
2,591,328 - MPMX20_02452 0.78 +1.7
2,591,335 + MPMX20_02452 0.79 +1.0
2,591,337 + MPMX20_02452 0.79 +1.1
2,591,337 + MPMX20_02452 0.79 +0.4
2,591,337 + MPMX20_02452 0.79 -1.7
2,591,337 + MPMX20_02452 0.79 -0.1
2,591,337 + MPMX20_02452 0.79 -0.1
2,591,337 + MPMX20_02452 0.79 +0.4
2,591,337 + MPMX20_02452 0.79 -1.3
2,591,337 + MPMX20_02452 0.79 +0.3
2,591,342 + MPMX20_02452 0.80 +1.1
2,591,343 - MPMX20_02452 0.80 +0.5
2,591,345 - MPMX20_02452 0.81 +1.7
2,591,345 - MPMX20_02452 0.81 -0.5
2,591,345 - MPMX20_02452 0.81 +0.7
2,591,345 - MPMX20_02452 0.81 +0.7
2,591,367 + MPMX20_02452 0.85 -0.6
2,591,367 + MPMX20_02452 0.85 -1.1
2,591,405 + -1.4
2,591,405 + -1.0
2,591,405 + +0.0
2,591,457 + +0.4
2,591,457 + -1.1
2,591,457 + -2.9
2,591,511 + +0.6
2,591,511 + +1.5
2,591,517 + +1.7
2,591,600 + +1.4
2,591,808 - -0.1
2,591,839 - -0.8
2,591,856 - +2.8
2,591,856 - -0.5
2,592,035 + MPMX20_02453 0.22 -0.3
2,592,038 - MPMX20_02453 0.22 -1.4
2,592,038 - MPMX20_02453 0.22 -0.2
2,592,043 - MPMX20_02453 0.22 -1.6
2,592,047 + MPMX20_02453 0.23 +1.2
2,592,086 + MPMX20_02453 0.26 -0.1
2,592,187 - MPMX20_02453 0.34 -1.4
2,592,230 + MPMX20_02453 0.38 +1.0
2,592,230 + MPMX20_02453 0.38 -0.7
2,592,230 + MPMX20_02453 0.38 -2.0
2,592,238 - MPMX20_02453 0.38 -0.6
2,592,238 - MPMX20_02453 0.38 -0.2
2,592,280 + MPMX20_02453 0.42 +1.7
2,592,378 - MPMX20_02453 0.50 -2.4
2,592,384 + MPMX20_02453 0.50 -0.6
2,592,384 + MPMX20_02453 0.50 -0.0
2,592,394 + MPMX20_02453 0.51 -1.0
2,592,501 + MPMX20_02453 0.60 +0.3
2,592,576 - MPMX20_02453 0.66 +0.3
2,592,578 - MPMX20_02453 0.67 +0.4
2,592,599 - MPMX20_02453 0.68 +0.0
2,592,605 - MPMX20_02453 0.69 -0.8
2,592,659 - MPMX20_02453 0.73 -1.7
2,592,661 + MPMX20_02453 0.73 -0.3
2,592,724 - MPMX20_02453 0.79 -1.1
2,592,724 - MPMX20_02453 0.79 +0.1
2,592,744 + MPMX20_02453 0.80 -0.4
2,592,866 - +3.4
2,592,868 + +0.5
2,592,870 + +0.1
2,592,870 + -0.4
2,592,870 + +0.3
2,592,870 + -1.1
2,592,870 + +0.9
2,592,870 + +0.0
2,592,870 + -0.4
2,592,870 + -1.5
2,592,870 + +1.7
2,592,870 + +0.4
2,592,870 + +1.7
2,592,870 + +1.4
2,592,876 - +0.3
2,592,876 - +0.4
2,592,878 - -0.7
2,592,878 - -0.7
2,592,878 - +0.4
2,592,878 - -1.3
2,592,878 - +0.7
2,592,878 - -1.3
2,592,878 - +0.6
2,592,878 - +2.1
2,592,898 + -2.0
2,592,906 - -1.4
2,592,928 + -0.0
2,592,940 + +0.2
2,592,948 - -0.5
2,592,948 - +1.5
2,593,028 + -0.3
2,593,036 - +2.5
2,593,053 + +3.3
2,593,104 + +0.3
2,593,104 + -1.2
2,593,138 + -0.6
2,593,194 + MPMX20_02454 0.11 +0.1
2,593,194 + MPMX20_02454 0.11 -0.7
2,593,202 + MPMX20_02454 0.12 -1.0
2,593,273 - MPMX20_02454 0.17 +1.7
2,593,323 + MPMX20_02454 0.20 -0.8
2,593,358 + MPMX20_02454 0.22 +1.1
2,593,366 - MPMX20_02454 0.23 -1.0
2,593,469 - MPMX20_02454 0.29 +0.3
2,593,476 - MPMX20_02454 0.30 -1.4
2,593,494 - MPMX20_02454 0.31 +0.3
2,593,497 - MPMX20_02454 0.31 +0.7
2,593,555 - MPMX20_02454 0.35 +4.0
2,593,682 - MPMX20_02454 0.43 -2.4
2,593,685 + MPMX20_02454 0.43 +0.1
2,593,685 + MPMX20_02454 0.43 +1.1
2,593,685 + MPMX20_02454 0.43 -0.1
2,593,693 - MPMX20_02454 0.44 -0.2
2,593,693 - MPMX20_02454 0.44 +1.0
2,593,693 - MPMX20_02454 0.44 +0.3
2,593,774 + MPMX20_02454 0.49 -0.8
2,593,945 - MPMX20_02454 0.60 -1.6

Or see this region's nucleotide sequence