Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02420 and MPMX20_02421 are separated by 24 nucleotides MPMX20_02421 and MPMX20_02422 overlap by 11 nucleotides MPMX20_02422 and MPMX20_02423 are separated by 1 nucleotides
MPMX20_02420: MPMX20_02420 - Gamma-aminobutyraldehyde dehydrogenase, at 2,557,350 to 2,558,774
_02420
MPMX20_02421: MPMX20_02421 - Inner membrane ABC transporter permease protein YdcV, at 2,558,799 to 2,559,605
_02421
MPMX20_02422: MPMX20_02422 - Inner membrane ABC transporter permease protein YdcU, at 2,559,595 to 2,560,539
_02422
MPMX20_02423: MPMX20_02423 - Spermidine/putrescine import ATP-binding protein PotA, at 2,560,541 to 2,561,554
_02423
Position (kb)
2559
2560
2561 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 2558.647 kb on + strand at 2558.655 kb on - strand at 2558.704 kb on + strand at 2558.704 kb on + strand at 2558.704 kb on + strand at 2558.704 kb on + strand at 2558.706 kb on + strand at 2558.712 kb on - strand at 2558.712 kb on - strand at 2558.712 kb on - strand at 2558.776 kb on + strand at 2558.784 kb on - strand at 2558.784 kb on - strand at 2558.786 kb on + strand at 2558.828 kb on - strand at 2558.874 kb on - strand at 2558.874 kb on - strand at 2558.896 kb on - strand, within MPMX20_02421 at 2558.896 kb on - strand, within MPMX20_02421 at 2558.931 kb on - strand, within MPMX20_02421 at 2558.961 kb on + strand, within MPMX20_02421 at 2559.033 kb on - strand, within MPMX20_02421 at 2559.101 kb on - strand, within MPMX20_02421 at 2559.127 kb on - strand, within MPMX20_02421 at 2559.127 kb on - strand, within MPMX20_02421 at 2559.246 kb on - strand, within MPMX20_02421 at 2559.384 kb on - strand, within MPMX20_02421 at 2559.384 kb on - strand, within MPMX20_02421 at 2559.432 kb on - strand, within MPMX20_02421 at 2559.440 kb on + strand, within MPMX20_02421 at 2559.504 kb on + strand, within MPMX20_02421 at 2559.518 kb on - strand, within MPMX20_02421 at 2559.554 kb on + strand at 2559.557 kb on + strand at 2559.587 kb on - strand at 2559.600 kb on - strand at 2559.656 kb on + strand at 2559.665 kb on + strand at 2559.708 kb on + strand, within MPMX20_02422 at 2559.708 kb on + strand, within MPMX20_02422 at 2559.716 kb on - strand, within MPMX20_02422 at 2559.716 kb on - strand, within MPMX20_02422 at 2559.716 kb on - strand, within MPMX20_02422 at 2559.992 kb on - strand, within MPMX20_02422 at 2560.052 kb on + strand, within MPMX20_02422 at 2560.054 kb on + strand, within MPMX20_02422 at 2560.173 kb on - strand, within MPMX20_02422 at 2560.251 kb on - strand, within MPMX20_02422 at 2560.364 kb on + strand, within MPMX20_02422 at 2560.364 kb on + strand, within MPMX20_02422 at 2560.464 kb on + strand at 2560.469 kb on + strand at 2560.469 kb on + strand at 2560.469 kb on + strand at 2560.469 kb on + strand at 2560.469 kb on + strand at 2560.472 kb on - strand at 2560.477 kb on - strand at 2560.477 kb on - strand at 2560.477 kb on - strand at 2560.477 kb on - strand at 2560.477 kb on - strand at 2560.485 kb on - strand at 2560.572 kb on - strand at 2560.602 kb on - strand at 2560.622 kb on - strand at 2560.660 kb on + strand, within MPMX20_02423 at 2560.668 kb on - strand, within MPMX20_02423 at 2560.709 kb on + strand, within MPMX20_02423 at 2560.714 kb on - strand, within MPMX20_02423 at 2560.731 kb on + strand, within MPMX20_02423 at 2560.737 kb on + strand, within MPMX20_02423 at 2560.745 kb on - strand, within MPMX20_02423 at 2560.794 kb on + strand, within MPMX20_02423 at 2560.795 kb on + strand, within MPMX20_02423 at 2560.883 kb on + strand, within MPMX20_02423 at 2560.883 kb on + strand, within MPMX20_02423 at 2560.889 kb on - strand, within MPMX20_02423 at 2560.915 kb on - strand, within MPMX20_02423 at 2560.946 kb on + strand, within MPMX20_02423 at 2560.950 kb on + strand, within MPMX20_02423 at 2560.958 kb on - strand, within MPMX20_02423 at 2561.058 kb on - strand, within MPMX20_02423 at 2561.100 kb on + strand, within MPMX20_02423 at 2561.153 kb on - strand, within MPMX20_02423 at 2561.153 kb on - strand, within MPMX20_02423 at 2561.153 kb on - strand, within MPMX20_02423 at 2561.160 kb on + strand, within MPMX20_02423 at 2561.161 kb on + strand, within MPMX20_02423 at 2561.180 kb on + strand, within MPMX20_02423 at 2561.181 kb on - strand, within MPMX20_02423 at 2561.274 kb on + strand, within MPMX20_02423 at 2561.338 kb on + strand, within MPMX20_02423 at 2561.390 kb on - strand, within MPMX20_02423 at 2561.392 kb on + strand, within MPMX20_02423 at 2561.481 kb on + strand at 2561.534 kb on + strand at 2561.536 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 2,558,647 + -0.6 2,558,655 - -0.2 2,558,704 + -1.4 2,558,704 + -0.4 2,558,704 + -0.3 2,558,704 + -1.6 2,558,706 + +1.2 2,558,712 - +2.0 2,558,712 - -0.3 2,558,712 - -2.6 2,558,776 + -1.4 2,558,784 - -0.8 2,558,784 - -0.6 2,558,786 + +0.4 2,558,828 - -1.0 2,558,874 - -0.5 2,558,874 - -0.0 2,558,896 - MPMX20_02421 0.12 +0.3 2,558,896 - MPMX20_02421 0.12 -1.5 2,558,931 - MPMX20_02421 0.16 +1.3 2,558,961 + MPMX20_02421 0.20 +3.5 2,559,033 - MPMX20_02421 0.29 +0.1 2,559,101 - MPMX20_02421 0.37 -0.4 2,559,127 - MPMX20_02421 0.41 +1.7 2,559,127 - MPMX20_02421 0.41 +0.5 2,559,246 - MPMX20_02421 0.55 +0.4 2,559,384 - MPMX20_02421 0.72 -1.4 2,559,384 - MPMX20_02421 0.72 +0.7 2,559,432 - MPMX20_02421 0.78 +0.0 2,559,440 + MPMX20_02421 0.79 -0.5 2,559,504 + MPMX20_02421 0.87 -2.9 2,559,518 - MPMX20_02421 0.89 -0.4 2,559,554 + -0.0 2,559,557 + -0.1 2,559,587 - +0.7 2,559,600 - -2.9 2,559,656 + +0.6 2,559,665 + -0.1 2,559,708 + MPMX20_02422 0.12 +0.4 2,559,708 + MPMX20_02422 0.12 -0.7 2,559,716 - MPMX20_02422 0.13 -0.8 2,559,716 - MPMX20_02422 0.13 -0.8 2,559,716 - MPMX20_02422 0.13 +0.5 2,559,992 - MPMX20_02422 0.42 -0.3 2,560,052 + MPMX20_02422 0.48 +1.7 2,560,054 + MPMX20_02422 0.49 +0.2 2,560,173 - MPMX20_02422 0.61 -1.3 2,560,251 - MPMX20_02422 0.69 +1.0 2,560,364 + MPMX20_02422 0.81 +11.8 2,560,364 + MPMX20_02422 0.81 -0.5 2,560,464 + -0.5 2,560,469 + -0.2 2,560,469 + -0.1 2,560,469 + -1.2 2,560,469 + +1.3 2,560,469 + +0.4 2,560,472 - -1.9 2,560,477 - +1.2 2,560,477 - -0.7 2,560,477 - +0.5 2,560,477 - -0.8 2,560,477 - -1.8 2,560,485 - +0.4 2,560,572 - +0.2 2,560,602 - -0.8 2,560,622 - -1.1 2,560,660 + MPMX20_02423 0.12 +0.2 2,560,668 - MPMX20_02423 0.13 -1.5 2,560,709 + MPMX20_02423 0.17 -0.1 2,560,714 - MPMX20_02423 0.17 -1.5 2,560,731 + MPMX20_02423 0.19 +1.1 2,560,737 + MPMX20_02423 0.19 +0.6 2,560,745 - MPMX20_02423 0.20 +0.1 2,560,794 + MPMX20_02423 0.25 -1.1 2,560,795 + MPMX20_02423 0.25 -0.8 2,560,883 + MPMX20_02423 0.34 +0.7 2,560,883 + MPMX20_02423 0.34 -0.6 2,560,889 - MPMX20_02423 0.34 -0.5 2,560,915 - MPMX20_02423 0.37 +2.7 2,560,946 + MPMX20_02423 0.40 +1.0 2,560,950 + MPMX20_02423 0.40 +0.4 2,560,958 - MPMX20_02423 0.41 -1.7 2,561,058 - MPMX20_02423 0.51 +0.9 2,561,100 + MPMX20_02423 0.55 +1.7 2,561,153 - MPMX20_02423 0.60 -0.2 2,561,153 - MPMX20_02423 0.60 -1.8 2,561,153 - MPMX20_02423 0.60 -1.8 2,561,160 + MPMX20_02423 0.61 -0.6 2,561,161 + MPMX20_02423 0.61 -1.9 2,561,180 + MPMX20_02423 0.63 -0.9 2,561,181 - MPMX20_02423 0.63 +0.3 2,561,274 + MPMX20_02423 0.72 -0.2 2,561,338 + MPMX20_02423 0.79 -1.1 2,561,390 - MPMX20_02423 0.84 -0.1 2,561,392 + MPMX20_02423 0.84 -0.6 2,561,481 + +0.8 2,561,534 + -0.6 2,561,536 + -0.2
Or see this region's nucleotide sequence