Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02422

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02420 and MPMX20_02421 are separated by 24 nucleotidesMPMX20_02421 and MPMX20_02422 overlap by 11 nucleotidesMPMX20_02422 and MPMX20_02423 are separated by 1 nucleotides MPMX20_02420: MPMX20_02420 - Gamma-aminobutyraldehyde dehydrogenase, at 2,557,350 to 2,558,774 _02420 MPMX20_02421: MPMX20_02421 - Inner membrane ABC transporter permease protein YdcV, at 2,558,799 to 2,559,605 _02421 MPMX20_02422: MPMX20_02422 - Inner membrane ABC transporter permease protein YdcU, at 2,559,595 to 2,560,539 _02422 MPMX20_02423: MPMX20_02423 - Spermidine/putrescine import ATP-binding protein PotA, at 2,560,541 to 2,561,554 _02423 Position (kb) 2559 2560 2561Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12at 2558.647 kb on + strandat 2558.655 kb on - strandat 2558.704 kb on + strandat 2558.704 kb on + strandat 2558.704 kb on + strandat 2558.704 kb on + strandat 2558.706 kb on + strandat 2558.712 kb on - strandat 2558.712 kb on - strandat 2558.712 kb on - strandat 2558.776 kb on + strandat 2558.784 kb on - strandat 2558.784 kb on - strandat 2558.786 kb on + strandat 2558.828 kb on - strandat 2558.874 kb on - strandat 2558.874 kb on - strandat 2558.896 kb on - strand, within MPMX20_02421at 2558.896 kb on - strand, within MPMX20_02421at 2558.931 kb on - strand, within MPMX20_02421at 2558.961 kb on + strand, within MPMX20_02421at 2559.033 kb on - strand, within MPMX20_02421at 2559.101 kb on - strand, within MPMX20_02421at 2559.127 kb on - strand, within MPMX20_02421at 2559.127 kb on - strand, within MPMX20_02421at 2559.246 kb on - strand, within MPMX20_02421at 2559.384 kb on - strand, within MPMX20_02421at 2559.384 kb on - strand, within MPMX20_02421at 2559.432 kb on - strand, within MPMX20_02421at 2559.440 kb on + strand, within MPMX20_02421at 2559.504 kb on + strand, within MPMX20_02421at 2559.518 kb on - strand, within MPMX20_02421at 2559.554 kb on + strandat 2559.557 kb on + strandat 2559.587 kb on - strandat 2559.600 kb on - strandat 2559.656 kb on + strandat 2559.665 kb on + strandat 2559.708 kb on + strand, within MPMX20_02422at 2559.708 kb on + strand, within MPMX20_02422at 2559.716 kb on - strand, within MPMX20_02422at 2559.716 kb on - strand, within MPMX20_02422at 2559.716 kb on - strand, within MPMX20_02422at 2559.992 kb on - strand, within MPMX20_02422at 2560.052 kb on + strand, within MPMX20_02422at 2560.054 kb on + strand, within MPMX20_02422at 2560.173 kb on - strand, within MPMX20_02422at 2560.251 kb on - strand, within MPMX20_02422at 2560.364 kb on + strand, within MPMX20_02422at 2560.364 kb on + strand, within MPMX20_02422at 2560.464 kb on + strandat 2560.469 kb on + strandat 2560.469 kb on + strandat 2560.469 kb on + strandat 2560.469 kb on + strandat 2560.469 kb on + strandat 2560.472 kb on - strandat 2560.477 kb on - strandat 2560.477 kb on - strandat 2560.477 kb on - strandat 2560.477 kb on - strandat 2560.477 kb on - strandat 2560.485 kb on - strandat 2560.572 kb on - strandat 2560.602 kb on - strandat 2560.622 kb on - strandat 2560.660 kb on + strand, within MPMX20_02423at 2560.668 kb on - strand, within MPMX20_02423at 2560.709 kb on + strand, within MPMX20_02423at 2560.714 kb on - strand, within MPMX20_02423at 2560.731 kb on + strand, within MPMX20_02423at 2560.737 kb on + strand, within MPMX20_02423at 2560.745 kb on - strand, within MPMX20_02423at 2560.794 kb on + strand, within MPMX20_02423at 2560.795 kb on + strand, within MPMX20_02423at 2560.883 kb on + strand, within MPMX20_02423at 2560.883 kb on + strand, within MPMX20_02423at 2560.889 kb on - strand, within MPMX20_02423at 2560.915 kb on - strand, within MPMX20_02423at 2560.946 kb on + strand, within MPMX20_02423at 2560.950 kb on + strand, within MPMX20_02423at 2560.958 kb on - strand, within MPMX20_02423at 2561.058 kb on - strand, within MPMX20_02423at 2561.100 kb on + strand, within MPMX20_02423at 2561.153 kb on - strand, within MPMX20_02423at 2561.153 kb on - strand, within MPMX20_02423at 2561.153 kb on - strand, within MPMX20_02423at 2561.160 kb on + strand, within MPMX20_02423at 2561.161 kb on + strand, within MPMX20_02423at 2561.180 kb on + strand, within MPMX20_02423at 2561.181 kb on - strand, within MPMX20_02423at 2561.274 kb on + strand, within MPMX20_02423at 2561.338 kb on + strand, within MPMX20_02423at 2561.390 kb on - strand, within MPMX20_02423at 2561.392 kb on + strand, within MPMX20_02423at 2561.481 kb on + strandat 2561.534 kb on + strandat 2561.536 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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2,558,647 + -0.6
2,558,655 - -0.2
2,558,704 + -1.4
2,558,704 + -0.4
2,558,704 + -0.3
2,558,704 + -1.6
2,558,706 + +1.2
2,558,712 - +2.0
2,558,712 - -0.3
2,558,712 - -2.6
2,558,776 + -1.4
2,558,784 - -0.8
2,558,784 - -0.6
2,558,786 + +0.4
2,558,828 - -1.0
2,558,874 - -0.5
2,558,874 - -0.0
2,558,896 - MPMX20_02421 0.12 +0.3
2,558,896 - MPMX20_02421 0.12 -1.5
2,558,931 - MPMX20_02421 0.16 +1.3
2,558,961 + MPMX20_02421 0.20 +3.5
2,559,033 - MPMX20_02421 0.29 +0.1
2,559,101 - MPMX20_02421 0.37 -0.4
2,559,127 - MPMX20_02421 0.41 +1.7
2,559,127 - MPMX20_02421 0.41 +0.5
2,559,246 - MPMX20_02421 0.55 +0.4
2,559,384 - MPMX20_02421 0.72 -1.4
2,559,384 - MPMX20_02421 0.72 +0.7
2,559,432 - MPMX20_02421 0.78 +0.0
2,559,440 + MPMX20_02421 0.79 -0.5
2,559,504 + MPMX20_02421 0.87 -2.9
2,559,518 - MPMX20_02421 0.89 -0.4
2,559,554 + -0.0
2,559,557 + -0.1
2,559,587 - +0.7
2,559,600 - -2.9
2,559,656 + +0.6
2,559,665 + -0.1
2,559,708 + MPMX20_02422 0.12 +0.4
2,559,708 + MPMX20_02422 0.12 -0.7
2,559,716 - MPMX20_02422 0.13 -0.8
2,559,716 - MPMX20_02422 0.13 -0.8
2,559,716 - MPMX20_02422 0.13 +0.5
2,559,992 - MPMX20_02422 0.42 -0.3
2,560,052 + MPMX20_02422 0.48 +1.7
2,560,054 + MPMX20_02422 0.49 +0.2
2,560,173 - MPMX20_02422 0.61 -1.3
2,560,251 - MPMX20_02422 0.69 +1.0
2,560,364 + MPMX20_02422 0.81 +11.8
2,560,364 + MPMX20_02422 0.81 -0.5
2,560,464 + -0.5
2,560,469 + -0.2
2,560,469 + -0.1
2,560,469 + -1.2
2,560,469 + +1.3
2,560,469 + +0.4
2,560,472 - -1.9
2,560,477 - +1.2
2,560,477 - -0.7
2,560,477 - +0.5
2,560,477 - -0.8
2,560,477 - -1.8
2,560,485 - +0.4
2,560,572 - +0.2
2,560,602 - -0.8
2,560,622 - -1.1
2,560,660 + MPMX20_02423 0.12 +0.2
2,560,668 - MPMX20_02423 0.13 -1.5
2,560,709 + MPMX20_02423 0.17 -0.1
2,560,714 - MPMX20_02423 0.17 -1.5
2,560,731 + MPMX20_02423 0.19 +1.1
2,560,737 + MPMX20_02423 0.19 +0.6
2,560,745 - MPMX20_02423 0.20 +0.1
2,560,794 + MPMX20_02423 0.25 -1.1
2,560,795 + MPMX20_02423 0.25 -0.8
2,560,883 + MPMX20_02423 0.34 +0.7
2,560,883 + MPMX20_02423 0.34 -0.6
2,560,889 - MPMX20_02423 0.34 -0.5
2,560,915 - MPMX20_02423 0.37 +2.7
2,560,946 + MPMX20_02423 0.40 +1.0
2,560,950 + MPMX20_02423 0.40 +0.4
2,560,958 - MPMX20_02423 0.41 -1.7
2,561,058 - MPMX20_02423 0.51 +0.9
2,561,100 + MPMX20_02423 0.55 +1.7
2,561,153 - MPMX20_02423 0.60 -0.2
2,561,153 - MPMX20_02423 0.60 -1.8
2,561,153 - MPMX20_02423 0.60 -1.8
2,561,160 + MPMX20_02423 0.61 -0.6
2,561,161 + MPMX20_02423 0.61 -1.9
2,561,180 + MPMX20_02423 0.63 -0.9
2,561,181 - MPMX20_02423 0.63 +0.3
2,561,274 + MPMX20_02423 0.72 -0.2
2,561,338 + MPMX20_02423 0.79 -1.1
2,561,390 - MPMX20_02423 0.84 -0.1
2,561,392 + MPMX20_02423 0.84 -0.6
2,561,481 + +0.8
2,561,534 + -0.6
2,561,536 + -0.2

Or see this region's nucleotide sequence