Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02362 and MPMX20_02363 are separated by 23 nucleotides MPMX20_02363 and MPMX20_02364 are separated by 127 nucleotides
MPMX20_02362: MPMX20_02362 - HTH-type transcriptional regulator PgrR, at 2,490,294 to 2,491,199
_02362
MPMX20_02363: MPMX20_02363 - Peroxiredoxin OsmC, at 2,491,223 to 2,491,651
_02363
MPMX20_02364: MPMX20_02364 - hypothetical protein, at 2,491,779 to 2,492,738
_02364
Position (kb)
2491
2492 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2490.237 kb on - strand at 2490.292 kb on + strand at 2490.297 kb on + strand at 2490.297 kb on + strand at 2490.302 kb on + strand at 2490.302 kb on + strand at 2490.302 kb on + strand at 2490.302 kb on + strand at 2490.302 kb on + strand at 2490.302 kb on + strand at 2490.310 kb on - strand at 2490.310 kb on - strand at 2490.310 kb on - strand at 2490.310 kb on - strand at 2490.310 kb on - strand at 2490.310 kb on - strand at 2490.319 kb on + strand at 2490.385 kb on - strand, within MPMX20_02362 at 2490.388 kb on + strand, within MPMX20_02362 at 2490.435 kb on + strand, within MPMX20_02362 at 2490.448 kb on + strand, within MPMX20_02362 at 2490.517 kb on + strand, within MPMX20_02362 at 2490.582 kb on + strand, within MPMX20_02362 at 2490.582 kb on + strand, within MPMX20_02362 at 2490.582 kb on + strand, within MPMX20_02362 at 2490.592 kb on + strand, within MPMX20_02362 at 2490.600 kb on - strand, within MPMX20_02362 at 2490.600 kb on - strand, within MPMX20_02362 at 2490.654 kb on - strand, within MPMX20_02362 at 2490.664 kb on + strand, within MPMX20_02362 at 2490.750 kb on - strand, within MPMX20_02362 at 2490.775 kb on - strand, within MPMX20_02362 at 2490.782 kb on + strand, within MPMX20_02362 at 2490.822 kb on + strand, within MPMX20_02362 at 2490.822 kb on + strand, within MPMX20_02362 at 2490.848 kb on - strand, within MPMX20_02362 at 2490.853 kb on + strand, within MPMX20_02362 at 2490.861 kb on - strand, within MPMX20_02362 at 2490.861 kb on - strand, within MPMX20_02362 at 2490.888 kb on + strand, within MPMX20_02362 at 2490.936 kb on - strand, within MPMX20_02362 at 2490.952 kb on + strand, within MPMX20_02362 at 2490.952 kb on + strand, within MPMX20_02362 at 2490.952 kb on + strand, within MPMX20_02362 at 2490.952 kb on + strand, within MPMX20_02362 at 2490.958 kb on - strand, within MPMX20_02362 at 2490.960 kb on - strand, within MPMX20_02362 at 2490.960 kb on - strand, within MPMX20_02362 at 2490.963 kb on + strand, within MPMX20_02362 at 2491.007 kb on - strand, within MPMX20_02362 at 2491.011 kb on + strand, within MPMX20_02362 at 2491.058 kb on - strand, within MPMX20_02362 at 2491.063 kb on + strand, within MPMX20_02362 at 2491.086 kb on + strand, within MPMX20_02362 at 2491.093 kb on - strand, within MPMX20_02362 at 2491.162 kb on + strand at 2491.233 kb on + strand at 2491.313 kb on - strand, within MPMX20_02363 at 2491.334 kb on - strand, within MPMX20_02363 at 2491.336 kb on + strand, within MPMX20_02363 at 2491.344 kb on - strand, within MPMX20_02363 at 2491.344 kb on - strand, within MPMX20_02363 at 2491.344 kb on - strand, within MPMX20_02363 at 2491.346 kb on + strand, within MPMX20_02363 at 2491.349 kb on - strand, within MPMX20_02363 at 2491.354 kb on - strand, within MPMX20_02363 at 2491.414 kb on + strand, within MPMX20_02363 at 2491.436 kb on - strand, within MPMX20_02363 at 2491.440 kb on + strand, within MPMX20_02363 at 2491.450 kb on + strand, within MPMX20_02363 at 2491.458 kb on - strand, within MPMX20_02363 at 2491.499 kb on - strand, within MPMX20_02363 at 2491.556 kb on - strand, within MPMX20_02363 at 2491.582 kb on - strand, within MPMX20_02363 at 2491.612 kb on + strand at 2491.620 kb on - strand at 2491.632 kb on - strand at 2491.632 kb on - strand at 2491.632 kb on - strand at 2491.661 kb on + strand at 2491.677 kb on + strand at 2491.677 kb on + strand at 2491.684 kb on + strand at 2491.685 kb on - strand at 2491.691 kb on - strand at 2491.696 kb on + strand at 2491.704 kb on - strand at 2491.707 kb on + strand at 2491.707 kb on + strand at 2491.774 kb on + strand at 2491.782 kb on - strand at 2491.814 kb on - strand at 2491.844 kb on - strand at 2491.882 kb on + strand, within MPMX20_02364 at 2491.890 kb on - strand, within MPMX20_02364 at 2491.919 kb on + strand, within MPMX20_02364 at 2491.938 kb on + strand, within MPMX20_02364 at 2491.953 kb on + strand, within MPMX20_02364 at 2491.956 kb on - strand, within MPMX20_02364 at 2491.995 kb on - strand, within MPMX20_02364 at 2492.012 kb on + strand, within MPMX20_02364 at 2492.012 kb on + strand, within MPMX20_02364 at 2492.019 kb on - strand, within MPMX20_02364 at 2492.078 kb on + strand, within MPMX20_02364 at 2492.082 kb on + strand, within MPMX20_02364 at 2492.109 kb on + strand, within MPMX20_02364 at 2492.111 kb on + strand, within MPMX20_02364 at 2492.143 kb on + strand, within MPMX20_02364 at 2492.166 kb on + strand, within MPMX20_02364 at 2492.166 kb on + strand, within MPMX20_02364 at 2492.166 kb on + strand, within MPMX20_02364 at 2492.168 kb on - strand, within MPMX20_02364 at 2492.174 kb on - strand, within MPMX20_02364 at 2492.174 kb on - strand, within MPMX20_02364 at 2492.175 kb on - strand, within MPMX20_02364 at 2492.184 kb on - strand, within MPMX20_02364 at 2492.213 kb on + strand, within MPMX20_02364 at 2492.213 kb on + strand, within MPMX20_02364 at 2492.213 kb on + strand, within MPMX20_02364 at 2492.258 kb on + strand, within MPMX20_02364 at 2492.258 kb on + strand, within MPMX20_02364 at 2492.266 kb on - strand, within MPMX20_02364 at 2492.266 kb on - strand, within MPMX20_02364 at 2492.266 kb on - strand, within MPMX20_02364 at 2492.266 kb on - strand, within MPMX20_02364 at 2492.274 kb on - strand, within MPMX20_02364 at 2492.293 kb on + strand, within MPMX20_02364 at 2492.358 kb on + strand, within MPMX20_02364 at 2492.368 kb on - strand, within MPMX20_02364 at 2492.390 kb on + strand, within MPMX20_02364 at 2492.398 kb on - strand, within MPMX20_02364 at 2492.435 kb on - strand, within MPMX20_02364 at 2492.493 kb on - strand, within MPMX20_02364 at 2492.519 kb on - strand, within MPMX20_02364 at 2492.519 kb on - strand, within MPMX20_02364 at 2492.587 kb on + strand, within MPMX20_02364 at 2492.593 kb on + strand, within MPMX20_02364 at 2492.601 kb on - strand, within MPMX20_02364
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 2,490,237 - -1.4 2,490,292 + +3.7 2,490,297 + -0.4 2,490,297 + -1.1 2,490,302 + -2.2 2,490,302 + -1.2 2,490,302 + -2.3 2,490,302 + -0.0 2,490,302 + -0.9 2,490,302 + -1.2 2,490,310 - -1.0 2,490,310 - -0.8 2,490,310 - -0.1 2,490,310 - +0.1 2,490,310 - -0.2 2,490,310 - -0.7 2,490,319 + -0.4 2,490,385 - MPMX20_02362 0.10 -1.1 2,490,388 + MPMX20_02362 0.10 -0.8 2,490,435 + MPMX20_02362 0.16 -0.6 2,490,448 + MPMX20_02362 0.17 +0.9 2,490,517 + MPMX20_02362 0.25 -0.5 2,490,582 + MPMX20_02362 0.32 -0.9 2,490,582 + MPMX20_02362 0.32 +0.0 2,490,582 + MPMX20_02362 0.32 -0.1 2,490,592 + MPMX20_02362 0.33 -1.0 2,490,600 - MPMX20_02362 0.34 -1.7 2,490,600 - MPMX20_02362 0.34 -1.8 2,490,654 - MPMX20_02362 0.40 +0.1 2,490,664 + MPMX20_02362 0.41 -0.8 2,490,750 - MPMX20_02362 0.50 -0.4 2,490,775 - MPMX20_02362 0.53 +1.5 2,490,782 + MPMX20_02362 0.54 -0.3 2,490,822 + MPMX20_02362 0.58 +0.4 2,490,822 + MPMX20_02362 0.58 -0.9 2,490,848 - MPMX20_02362 0.61 -1.6 2,490,853 + MPMX20_02362 0.62 -3.2 2,490,861 - MPMX20_02362 0.63 +0.5 2,490,861 - MPMX20_02362 0.63 +0.5 2,490,888 + MPMX20_02362 0.66 -2.7 2,490,936 - MPMX20_02362 0.71 -0.2 2,490,952 + MPMX20_02362 0.73 +1.6 2,490,952 + MPMX20_02362 0.73 -0.3 2,490,952 + MPMX20_02362 0.73 +0.4 2,490,952 + MPMX20_02362 0.73 +1.0 2,490,958 - MPMX20_02362 0.73 -0.3 2,490,960 - MPMX20_02362 0.74 -0.5 2,490,960 - MPMX20_02362 0.74 +0.4 2,490,963 + MPMX20_02362 0.74 +0.3 2,491,007 - MPMX20_02362 0.79 +0.1 2,491,011 + MPMX20_02362 0.79 -0.3 2,491,058 - MPMX20_02362 0.84 +0.7 2,491,063 + MPMX20_02362 0.85 +2.7 2,491,086 + MPMX20_02362 0.87 -0.0 2,491,093 - MPMX20_02362 0.88 -0.9 2,491,162 + -0.3 2,491,233 + +1.9 2,491,313 - MPMX20_02363 0.21 +1.0 2,491,334 - MPMX20_02363 0.26 +1.3 2,491,336 + MPMX20_02363 0.26 -2.0 2,491,344 - MPMX20_02363 0.28 -0.1 2,491,344 - MPMX20_02363 0.28 -0.2 2,491,344 - MPMX20_02363 0.28 +0.7 2,491,346 + MPMX20_02363 0.29 +4.2 2,491,349 - MPMX20_02363 0.29 +1.7 2,491,354 - MPMX20_02363 0.31 -0.9 2,491,414 + MPMX20_02363 0.45 +0.1 2,491,436 - MPMX20_02363 0.50 +0.3 2,491,440 + MPMX20_02363 0.51 +2.7 2,491,450 + MPMX20_02363 0.53 +0.6 2,491,458 - MPMX20_02363 0.55 -1.3 2,491,499 - MPMX20_02363 0.64 -1.7 2,491,556 - MPMX20_02363 0.78 -1.3 2,491,582 - MPMX20_02363 0.84 -1.9 2,491,612 + -2.3 2,491,620 - -0.5 2,491,632 - -0.2 2,491,632 - +0.1 2,491,632 - -1.9 2,491,661 + +0.4 2,491,677 + -0.0 2,491,677 + -2.6 2,491,684 + +1.2 2,491,685 - +0.5 2,491,691 - +1.3 2,491,696 + +1.9 2,491,704 - +0.7 2,491,707 + -0.1 2,491,707 + +0.4 2,491,774 + +0.2 2,491,782 - +0.2 2,491,814 - +1.7 2,491,844 - -0.4 2,491,882 + MPMX20_02364 0.11 -0.6 2,491,890 - MPMX20_02364 0.12 +1.1 2,491,919 + MPMX20_02364 0.15 +1.0 2,491,938 + MPMX20_02364 0.17 +1.1 2,491,953 + MPMX20_02364 0.18 -0.3 2,491,956 - MPMX20_02364 0.18 -1.2 2,491,995 - MPMX20_02364 0.23 +0.7 2,492,012 + MPMX20_02364 0.24 +0.9 2,492,012 + MPMX20_02364 0.24 -0.0 2,492,019 - MPMX20_02364 0.25 -2.5 2,492,078 + MPMX20_02364 0.31 +0.1 2,492,082 + MPMX20_02364 0.32 -0.4 2,492,109 + MPMX20_02364 0.34 -1.2 2,492,111 + MPMX20_02364 0.35 +0.4 2,492,143 + MPMX20_02364 0.38 -0.7 2,492,166 + MPMX20_02364 0.40 -1.1 2,492,166 + MPMX20_02364 0.40 +0.1 2,492,166 + MPMX20_02364 0.40 -0.5 2,492,168 - MPMX20_02364 0.41 -2.0 2,492,174 - MPMX20_02364 0.41 -0.7 2,492,174 - MPMX20_02364 0.41 -1.0 2,492,175 - MPMX20_02364 0.41 +1.1 2,492,184 - MPMX20_02364 0.42 -0.9 2,492,213 + MPMX20_02364 0.45 -0.1 2,492,213 + MPMX20_02364 0.45 +0.4 2,492,213 + MPMX20_02364 0.45 -0.2 2,492,258 + MPMX20_02364 0.50 -0.1 2,492,258 + MPMX20_02364 0.50 -0.3 2,492,266 - MPMX20_02364 0.51 -0.6 2,492,266 - MPMX20_02364 0.51 +1.7 2,492,266 - MPMX20_02364 0.51 +1.9 2,492,266 - MPMX20_02364 0.51 +2.7 2,492,274 - MPMX20_02364 0.52 -0.1 2,492,293 + MPMX20_02364 0.54 -1.1 2,492,358 + MPMX20_02364 0.60 +1.0 2,492,368 - MPMX20_02364 0.61 -2.6 2,492,390 + MPMX20_02364 0.64 -0.3 2,492,398 - MPMX20_02364 0.64 +2.7 2,492,435 - MPMX20_02364 0.68 -2.4 2,492,493 - MPMX20_02364 0.74 -2.1 2,492,519 - MPMX20_02364 0.77 -1.8 2,492,519 - MPMX20_02364 0.77 +0.7 2,492,587 + MPMX20_02364 0.84 -0.1 2,492,593 + MPMX20_02364 0.85 -0.4 2,492,601 - MPMX20_02364 0.86 +0.7
Or see this region's nucleotide sequence