Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01917

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01915 and MPMX20_01916 overlap by 1 nucleotidesMPMX20_01916 and MPMX20_01917 overlap by 4 nucleotidesMPMX20_01917 and MPMX20_01918 are separated by 47 nucleotides MPMX20_01915: MPMX20_01915 - Hemin transport system permease protein HmuU, at 2,005,823 to 2,006,815 _01915 MPMX20_01916: MPMX20_01916 - Hemin-binding periplasmic protein HmuT, at 2,006,815 to 2,007,636 _01916 MPMX20_01917: MPMX20_01917 - Hemin transport protein HemS, at 2,007,633 to 2,008,661 _01917 MPMX20_01918: MPMX20_01918 - Hemin receptor, at 2,008,709 to 2,010,694 _01918 Position (kb) 2007 2008 2009Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2006.675 kb on + strand, within MPMX20_01915at 2006.747 kb on - strandat 2006.755 kb on + strandat 2006.854 kb on + strandat 2006.871 kb on + strandat 2006.871 kb on + strandat 2006.871 kb on + strandat 2006.871 kb on + strandat 2006.879 kb on - strandat 2006.902 kb on + strand, within MPMX20_01916at 2006.907 kb on + strand, within MPMX20_01916at 2006.910 kb on - strand, within MPMX20_01916at 2006.915 kb on - strand, within MPMX20_01916at 2006.944 kb on + strand, within MPMX20_01916at 2006.952 kb on - strand, within MPMX20_01916at 2006.952 kb on - strand, within MPMX20_01916at 2007.028 kb on + strand, within MPMX20_01916at 2007.046 kb on - strand, within MPMX20_01916at 2007.046 kb on - strand, within MPMX20_01916at 2007.068 kb on - strand, within MPMX20_01916at 2007.196 kb on + strand, within MPMX20_01916at 2007.204 kb on - strand, within MPMX20_01916at 2007.204 kb on - strand, within MPMX20_01916at 2007.216 kb on + strand, within MPMX20_01916at 2007.241 kb on + strand, within MPMX20_01916at 2007.249 kb on - strand, within MPMX20_01916at 2007.249 kb on - strand, within MPMX20_01916at 2007.303 kb on + strand, within MPMX20_01916at 2007.305 kb on - strand, within MPMX20_01916at 2007.311 kb on - strand, within MPMX20_01916at 2007.311 kb on - strand, within MPMX20_01916at 2007.311 kb on - strand, within MPMX20_01916at 2007.321 kb on - strand, within MPMX20_01916at 2007.334 kb on + strand, within MPMX20_01916at 2007.334 kb on + strand, within MPMX20_01916at 2007.334 kb on + strand, within MPMX20_01916at 2007.337 kb on - strand, within MPMX20_01916at 2007.339 kb on + strand, within MPMX20_01916at 2007.339 kb on + strand, within MPMX20_01916at 2007.347 kb on - strand, within MPMX20_01916at 2007.373 kb on - strand, within MPMX20_01916at 2007.391 kb on - strand, within MPMX20_01916at 2007.421 kb on - strand, within MPMX20_01916at 2007.421 kb on - strand, within MPMX20_01916at 2007.494 kb on - strand, within MPMX20_01916at 2007.608 kb on + strandat 2007.608 kb on + strandat 2007.616 kb on - strandat 2007.669 kb on - strandat 2007.689 kb on + strandat 2007.689 kb on + strandat 2007.695 kb on - strandat 2007.697 kb on - strandat 2007.715 kb on + strandat 2007.723 kb on - strandat 2007.755 kb on + strand, within MPMX20_01917at 2007.755 kb on + strand, within MPMX20_01917at 2007.763 kb on - strand, within MPMX20_01917at 2007.961 kb on - strand, within MPMX20_01917at 2007.991 kb on + strand, within MPMX20_01917at 2007.994 kb on - strand, within MPMX20_01917at 2008.003 kb on - strand, within MPMX20_01917at 2008.003 kb on - strand, within MPMX20_01917at 2008.070 kb on - strand, within MPMX20_01917at 2008.115 kb on - strand, within MPMX20_01917at 2008.153 kb on - strand, within MPMX20_01917at 2008.293 kb on + strand, within MPMX20_01917at 2008.293 kb on + strand, within MPMX20_01917at 2008.294 kb on + strand, within MPMX20_01917at 2008.312 kb on - strand, within MPMX20_01917at 2008.358 kb on - strand, within MPMX20_01917at 2008.479 kb on - strand, within MPMX20_01917at 2008.560 kb on + strandat 2008.611 kb on - strandat 2008.634 kb on + strandat 2008.760 kb on + strandat 2008.760 kb on + strandat 2008.765 kb on + strandat 2008.768 kb on - strandat 2008.772 kb on + strandat 2008.773 kb on + strandat 2008.780 kb on - strandat 2008.791 kb on + strandat 2008.815 kb on - strandat 2008.821 kb on + strandat 2008.821 kb on + strandat 2008.821 kb on + strandat 2008.829 kb on - strandat 2008.829 kb on - strandat 2008.829 kb on - strandat 2008.829 kb on - strandat 2008.829 kb on - strandat 2008.829 kb on - strandat 2008.840 kb on - strandat 2008.874 kb on + strandat 2008.882 kb on - strandat 2008.906 kb on + strandat 2008.906 kb on + strandat 2008.990 kb on - strand, within MPMX20_01918at 2009.040 kb on - strand, within MPMX20_01918at 2009.048 kb on + strand, within MPMX20_01918at 2009.048 kb on + strand, within MPMX20_01918at 2009.072 kb on - strand, within MPMX20_01918at 2009.144 kb on + strand, within MPMX20_01918at 2009.182 kb on - strand, within MPMX20_01918at 2009.299 kb on + strand, within MPMX20_01918at 2009.325 kb on + strand, within MPMX20_01918at 2009.325 kb on + strand, within MPMX20_01918at 2009.325 kb on + strand, within MPMX20_01918at 2009.333 kb on - strand, within MPMX20_01918at 2009.333 kb on - strand, within MPMX20_01918at 2009.333 kb on - strand, within MPMX20_01918at 2009.396 kb on - strand, within MPMX20_01918at 2009.436 kb on + strand, within MPMX20_01918at 2009.454 kb on - strand, within MPMX20_01918at 2009.483 kb on + strand, within MPMX20_01918at 2009.565 kb on - strand, within MPMX20_01918

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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2,006,675 + MPMX20_01915 0.86 +2.7
2,006,747 - +1.3
2,006,755 + -2.1
2,006,854 + -0.6
2,006,871 + +4.3
2,006,871 + -0.5
2,006,871 + -1.2
2,006,871 + -0.8
2,006,879 - -0.8
2,006,902 + MPMX20_01916 0.11 +2.2
2,006,907 + MPMX20_01916 0.11 +0.4
2,006,910 - MPMX20_01916 0.12 +0.2
2,006,915 - MPMX20_01916 0.12 +0.7
2,006,944 + MPMX20_01916 0.16 +1.3
2,006,952 - MPMX20_01916 0.17 -0.3
2,006,952 - MPMX20_01916 0.17 -0.7
2,007,028 + MPMX20_01916 0.26 +1.9
2,007,046 - MPMX20_01916 0.28 +0.4
2,007,046 - MPMX20_01916 0.28 -0.8
2,007,068 - MPMX20_01916 0.31 -0.1
2,007,196 + MPMX20_01916 0.46 -1.0
2,007,204 - MPMX20_01916 0.47 -0.9
2,007,204 - MPMX20_01916 0.47 +0.7
2,007,216 + MPMX20_01916 0.49 +0.2
2,007,241 + MPMX20_01916 0.52 -0.4
2,007,249 - MPMX20_01916 0.53 +0.2
2,007,249 - MPMX20_01916 0.53 +0.1
2,007,303 + MPMX20_01916 0.59 -0.0
2,007,305 - MPMX20_01916 0.60 -1.1
2,007,311 - MPMX20_01916 0.60 +0.8
2,007,311 - MPMX20_01916 0.60 +1.5
2,007,311 - MPMX20_01916 0.60 -0.1
2,007,321 - MPMX20_01916 0.62 -1.9
2,007,334 + MPMX20_01916 0.63 -1.8
2,007,334 + MPMX20_01916 0.63 -0.4
2,007,334 + MPMX20_01916 0.63 -0.5
2,007,337 - MPMX20_01916 0.64 -1.6
2,007,339 + MPMX20_01916 0.64 +0.5
2,007,339 + MPMX20_01916 0.64 +2.1
2,007,347 - MPMX20_01916 0.65 -0.8
2,007,373 - MPMX20_01916 0.68 +0.5
2,007,391 - MPMX20_01916 0.70 +1.8
2,007,421 - MPMX20_01916 0.74 -0.7
2,007,421 - MPMX20_01916 0.74 -0.1
2,007,494 - MPMX20_01916 0.83 -1.1
2,007,608 + -1.3
2,007,608 + -1.4
2,007,616 - -1.0
2,007,669 - +1.7
2,007,689 + -0.5
2,007,689 + -1.1
2,007,695 - -1.0
2,007,697 - -1.7
2,007,715 + -0.6
2,007,723 - +0.7
2,007,755 + MPMX20_01917 0.12 -1.5
2,007,755 + MPMX20_01917 0.12 -0.1
2,007,763 - MPMX20_01917 0.13 +5.3
2,007,961 - MPMX20_01917 0.32 -0.2
2,007,991 + MPMX20_01917 0.35 -0.2
2,007,994 - MPMX20_01917 0.35 -0.1
2,008,003 - MPMX20_01917 0.36 -0.1
2,008,003 - MPMX20_01917 0.36 -0.4
2,008,070 - MPMX20_01917 0.42 +0.9
2,008,115 - MPMX20_01917 0.47 +0.1
2,008,153 - MPMX20_01917 0.51 +0.4
2,008,293 + MPMX20_01917 0.64 -0.0
2,008,293 + MPMX20_01917 0.64 +0.9
2,008,294 + MPMX20_01917 0.64 +1.1
2,008,312 - MPMX20_01917 0.66 -0.6
2,008,358 - MPMX20_01917 0.70 +1.1
2,008,479 - MPMX20_01917 0.82 -0.4
2,008,560 + -0.5
2,008,611 - -0.0
2,008,634 + -2.6
2,008,760 + +0.9
2,008,760 + -1.4
2,008,765 + -0.8
2,008,768 - +0.6
2,008,772 + +0.3
2,008,773 + -0.5
2,008,780 - -0.1
2,008,791 + -1.2
2,008,815 - +0.2
2,008,821 + -1.5
2,008,821 + +1.7
2,008,821 + +0.1
2,008,829 - +0.2
2,008,829 - -1.9
2,008,829 - -2.0
2,008,829 - -1.1
2,008,829 - +0.4
2,008,829 - -0.1
2,008,840 - -0.6
2,008,874 + +0.2
2,008,882 - +3.2
2,008,906 + +1.0
2,008,906 + +1.1
2,008,990 - MPMX20_01918 0.14 -0.6
2,009,040 - MPMX20_01918 0.17 +1.2
2,009,048 + MPMX20_01918 0.17 +0.4
2,009,048 + MPMX20_01918 0.17 +1.7
2,009,072 - MPMX20_01918 0.18 -0.8
2,009,144 + MPMX20_01918 0.22 -0.8
2,009,182 - MPMX20_01918 0.24 +0.7
2,009,299 + MPMX20_01918 0.30 +1.1
2,009,325 + MPMX20_01918 0.31 -1.2
2,009,325 + MPMX20_01918 0.31 +0.9
2,009,325 + MPMX20_01918 0.31 -1.1
2,009,333 - MPMX20_01918 0.31 +0.4
2,009,333 - MPMX20_01918 0.31 -0.1
2,009,333 - MPMX20_01918 0.31 -1.3
2,009,396 - MPMX20_01918 0.35 -0.1
2,009,436 + MPMX20_01918 0.37 +0.3
2,009,454 - MPMX20_01918 0.38 -1.2
2,009,483 + MPMX20_01918 0.39 +0.4
2,009,565 - MPMX20_01918 0.43 -0.6

Or see this region's nucleotide sequence