Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01915 and MPMX20_01916 overlap by 1 nucleotides MPMX20_01916 and MPMX20_01917 overlap by 4 nucleotides MPMX20_01917 and MPMX20_01918 are separated by 47 nucleotides
MPMX20_01915: MPMX20_01915 - Hemin transport system permease protein HmuU, at 2,005,823 to 2,006,815
_01915
MPMX20_01916: MPMX20_01916 - Hemin-binding periplasmic protein HmuT, at 2,006,815 to 2,007,636
_01916
MPMX20_01917: MPMX20_01917 - Hemin transport protein HemS, at 2,007,633 to 2,008,661
_01917
MPMX20_01918: MPMX20_01918 - Hemin receptor, at 2,008,709 to 2,010,694
_01918
Position (kb)
2007
2008
2009 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2006.675 kb on + strand, within MPMX20_01915 at 2006.747 kb on - strand at 2006.755 kb on + strand at 2006.854 kb on + strand at 2006.871 kb on + strand at 2006.871 kb on + strand at 2006.871 kb on + strand at 2006.871 kb on + strand at 2006.879 kb on - strand at 2006.902 kb on + strand, within MPMX20_01916 at 2006.907 kb on + strand, within MPMX20_01916 at 2006.910 kb on - strand, within MPMX20_01916 at 2006.915 kb on - strand, within MPMX20_01916 at 2006.944 kb on + strand, within MPMX20_01916 at 2006.952 kb on - strand, within MPMX20_01916 at 2006.952 kb on - strand, within MPMX20_01916 at 2007.028 kb on + strand, within MPMX20_01916 at 2007.046 kb on - strand, within MPMX20_01916 at 2007.046 kb on - strand, within MPMX20_01916 at 2007.068 kb on - strand, within MPMX20_01916 at 2007.196 kb on + strand, within MPMX20_01916 at 2007.204 kb on - strand, within MPMX20_01916 at 2007.204 kb on - strand, within MPMX20_01916 at 2007.216 kb on + strand, within MPMX20_01916 at 2007.241 kb on + strand, within MPMX20_01916 at 2007.249 kb on - strand, within MPMX20_01916 at 2007.249 kb on - strand, within MPMX20_01916 at 2007.303 kb on + strand, within MPMX20_01916 at 2007.305 kb on - strand, within MPMX20_01916 at 2007.311 kb on - strand, within MPMX20_01916 at 2007.311 kb on - strand, within MPMX20_01916 at 2007.311 kb on - strand, within MPMX20_01916 at 2007.321 kb on - strand, within MPMX20_01916 at 2007.334 kb on + strand, within MPMX20_01916 at 2007.334 kb on + strand, within MPMX20_01916 at 2007.334 kb on + strand, within MPMX20_01916 at 2007.337 kb on - strand, within MPMX20_01916 at 2007.339 kb on + strand, within MPMX20_01916 at 2007.339 kb on + strand, within MPMX20_01916 at 2007.347 kb on - strand, within MPMX20_01916 at 2007.373 kb on - strand, within MPMX20_01916 at 2007.391 kb on - strand, within MPMX20_01916 at 2007.421 kb on - strand, within MPMX20_01916 at 2007.421 kb on - strand, within MPMX20_01916 at 2007.494 kb on - strand, within MPMX20_01916 at 2007.608 kb on + strand at 2007.608 kb on + strand at 2007.616 kb on - strand at 2007.669 kb on - strand at 2007.689 kb on + strand at 2007.689 kb on + strand at 2007.695 kb on - strand at 2007.697 kb on - strand at 2007.715 kb on + strand at 2007.723 kb on - strand at 2007.755 kb on + strand, within MPMX20_01917 at 2007.755 kb on + strand, within MPMX20_01917 at 2007.763 kb on - strand, within MPMX20_01917 at 2007.961 kb on - strand, within MPMX20_01917 at 2007.991 kb on + strand, within MPMX20_01917 at 2007.994 kb on - strand, within MPMX20_01917 at 2008.003 kb on - strand, within MPMX20_01917 at 2008.003 kb on - strand, within MPMX20_01917 at 2008.070 kb on - strand, within MPMX20_01917 at 2008.115 kb on - strand, within MPMX20_01917 at 2008.153 kb on - strand, within MPMX20_01917 at 2008.293 kb on + strand, within MPMX20_01917 at 2008.293 kb on + strand, within MPMX20_01917 at 2008.294 kb on + strand, within MPMX20_01917 at 2008.312 kb on - strand, within MPMX20_01917 at 2008.358 kb on - strand, within MPMX20_01917 at 2008.479 kb on - strand, within MPMX20_01917 at 2008.560 kb on + strand at 2008.611 kb on - strand at 2008.634 kb on + strand at 2008.760 kb on + strand at 2008.760 kb on + strand at 2008.765 kb on + strand at 2008.768 kb on - strand at 2008.772 kb on + strand at 2008.773 kb on + strand at 2008.780 kb on - strand at 2008.791 kb on + strand at 2008.815 kb on - strand at 2008.821 kb on + strand at 2008.821 kb on + strand at 2008.821 kb on + strand at 2008.829 kb on - strand at 2008.829 kb on - strand at 2008.829 kb on - strand at 2008.829 kb on - strand at 2008.829 kb on - strand at 2008.829 kb on - strand at 2008.840 kb on - strand at 2008.874 kb on + strand at 2008.882 kb on - strand at 2008.906 kb on + strand at 2008.906 kb on + strand at 2008.990 kb on - strand, within MPMX20_01918 at 2009.040 kb on - strand, within MPMX20_01918 at 2009.048 kb on + strand, within MPMX20_01918 at 2009.048 kb on + strand, within MPMX20_01918 at 2009.072 kb on - strand, within MPMX20_01918 at 2009.144 kb on + strand, within MPMX20_01918 at 2009.182 kb on - strand, within MPMX20_01918 at 2009.299 kb on + strand, within MPMX20_01918 at 2009.325 kb on + strand, within MPMX20_01918 at 2009.325 kb on + strand, within MPMX20_01918 at 2009.325 kb on + strand, within MPMX20_01918 at 2009.333 kb on - strand, within MPMX20_01918 at 2009.333 kb on - strand, within MPMX20_01918 at 2009.333 kb on - strand, within MPMX20_01918 at 2009.396 kb on - strand, within MPMX20_01918 at 2009.436 kb on + strand, within MPMX20_01918 at 2009.454 kb on - strand, within MPMX20_01918 at 2009.483 kb on + strand, within MPMX20_01918 at 2009.565 kb on - strand, within MPMX20_01918
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 2,006,675 + MPMX20_01915 0.86 +2.7 2,006,747 - +1.3 2,006,755 + -2.1 2,006,854 + -0.6 2,006,871 + +4.3 2,006,871 + -0.5 2,006,871 + -1.2 2,006,871 + -0.8 2,006,879 - -0.8 2,006,902 + MPMX20_01916 0.11 +2.2 2,006,907 + MPMX20_01916 0.11 +0.4 2,006,910 - MPMX20_01916 0.12 +0.2 2,006,915 - MPMX20_01916 0.12 +0.7 2,006,944 + MPMX20_01916 0.16 +1.3 2,006,952 - MPMX20_01916 0.17 -0.3 2,006,952 - MPMX20_01916 0.17 -0.7 2,007,028 + MPMX20_01916 0.26 +1.9 2,007,046 - MPMX20_01916 0.28 +0.4 2,007,046 - MPMX20_01916 0.28 -0.8 2,007,068 - MPMX20_01916 0.31 -0.1 2,007,196 + MPMX20_01916 0.46 -1.0 2,007,204 - MPMX20_01916 0.47 -0.9 2,007,204 - MPMX20_01916 0.47 +0.7 2,007,216 + MPMX20_01916 0.49 +0.2 2,007,241 + MPMX20_01916 0.52 -0.4 2,007,249 - MPMX20_01916 0.53 +0.2 2,007,249 - MPMX20_01916 0.53 +0.1 2,007,303 + MPMX20_01916 0.59 -0.0 2,007,305 - MPMX20_01916 0.60 -1.1 2,007,311 - MPMX20_01916 0.60 +0.8 2,007,311 - MPMX20_01916 0.60 +1.5 2,007,311 - MPMX20_01916 0.60 -0.1 2,007,321 - MPMX20_01916 0.62 -1.9 2,007,334 + MPMX20_01916 0.63 -1.8 2,007,334 + MPMX20_01916 0.63 -0.4 2,007,334 + MPMX20_01916 0.63 -0.5 2,007,337 - MPMX20_01916 0.64 -1.6 2,007,339 + MPMX20_01916 0.64 +0.5 2,007,339 + MPMX20_01916 0.64 +2.1 2,007,347 - MPMX20_01916 0.65 -0.8 2,007,373 - MPMX20_01916 0.68 +0.5 2,007,391 - MPMX20_01916 0.70 +1.8 2,007,421 - MPMX20_01916 0.74 -0.7 2,007,421 - MPMX20_01916 0.74 -0.1 2,007,494 - MPMX20_01916 0.83 -1.1 2,007,608 + -1.3 2,007,608 + -1.4 2,007,616 - -1.0 2,007,669 - +1.7 2,007,689 + -0.5 2,007,689 + -1.1 2,007,695 - -1.0 2,007,697 - -1.7 2,007,715 + -0.6 2,007,723 - +0.7 2,007,755 + MPMX20_01917 0.12 -1.5 2,007,755 + MPMX20_01917 0.12 -0.1 2,007,763 - MPMX20_01917 0.13 +5.3 2,007,961 - MPMX20_01917 0.32 -0.2 2,007,991 + MPMX20_01917 0.35 -0.2 2,007,994 - MPMX20_01917 0.35 -0.1 2,008,003 - MPMX20_01917 0.36 -0.1 2,008,003 - MPMX20_01917 0.36 -0.4 2,008,070 - MPMX20_01917 0.42 +0.9 2,008,115 - MPMX20_01917 0.47 +0.1 2,008,153 - MPMX20_01917 0.51 +0.4 2,008,293 + MPMX20_01917 0.64 -0.0 2,008,293 + MPMX20_01917 0.64 +0.9 2,008,294 + MPMX20_01917 0.64 +1.1 2,008,312 - MPMX20_01917 0.66 -0.6 2,008,358 - MPMX20_01917 0.70 +1.1 2,008,479 - MPMX20_01917 0.82 -0.4 2,008,560 + -0.5 2,008,611 - -0.0 2,008,634 + -2.6 2,008,760 + +0.9 2,008,760 + -1.4 2,008,765 + -0.8 2,008,768 - +0.6 2,008,772 + +0.3 2,008,773 + -0.5 2,008,780 - -0.1 2,008,791 + -1.2 2,008,815 - +0.2 2,008,821 + -1.5 2,008,821 + +1.7 2,008,821 + +0.1 2,008,829 - +0.2 2,008,829 - -1.9 2,008,829 - -2.0 2,008,829 - -1.1 2,008,829 - +0.4 2,008,829 - -0.1 2,008,840 - -0.6 2,008,874 + +0.2 2,008,882 - +3.2 2,008,906 + +1.0 2,008,906 + +1.1 2,008,990 - MPMX20_01918 0.14 -0.6 2,009,040 - MPMX20_01918 0.17 +1.2 2,009,048 + MPMX20_01918 0.17 +0.4 2,009,048 + MPMX20_01918 0.17 +1.7 2,009,072 - MPMX20_01918 0.18 -0.8 2,009,144 + MPMX20_01918 0.22 -0.8 2,009,182 - MPMX20_01918 0.24 +0.7 2,009,299 + MPMX20_01918 0.30 +1.1 2,009,325 + MPMX20_01918 0.31 -1.2 2,009,325 + MPMX20_01918 0.31 +0.9 2,009,325 + MPMX20_01918 0.31 -1.1 2,009,333 - MPMX20_01918 0.31 +0.4 2,009,333 - MPMX20_01918 0.31 -0.1 2,009,333 - MPMX20_01918 0.31 -1.3 2,009,396 - MPMX20_01918 0.35 -0.1 2,009,436 + MPMX20_01918 0.37 +0.3 2,009,454 - MPMX20_01918 0.38 -1.2 2,009,483 + MPMX20_01918 0.39 +0.4 2,009,565 - MPMX20_01918 0.43 -0.6
Or see this region's nucleotide sequence