Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01847

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01845 and MPMX20_01846 are separated by 41 nucleotidesMPMX20_01846 and MPMX20_01847 are separated by 55 nucleotidesMPMX20_01847 and MPMX20_01848 are separated by 170 nucleotidesMPMX20_01848 and MPMX20_01849 are separated by 9 nucleotides MPMX20_01845: MPMX20_01845 - Peptide methionine sulfoxide reductase MsrB, at 1,939,193 to 1,939,606 _01845 MPMX20_01846: MPMX20_01846 - hypothetical protein, at 1,939,648 to 1,939,926 _01846 MPMX20_01847: MPMX20_01847 - Chitinase A1, at 1,939,982 to 1,941,241 _01847 MPMX20_01848: MPMX20_01848 - Nicotinamidase, at 1,941,412 to 1,942,053 _01848 MPMX20_01849: MPMX20_01849 - L-asparaginase 1, at 1,942,063 to 1,943,079 _01849 Position (kb) 1939 1940 1941 1942Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 1939.014 kb on + strandat 1939.014 kb on + strandat 1939.014 kb on + strandat 1939.014 kb on + strandat 1939.022 kb on - strandat 1939.105 kb on - strandat 1939.199 kb on + strandat 1939.203 kb on + strandat 1939.212 kb on - strandat 1939.212 kb on - strandat 1939.254 kb on - strand, within MPMX20_01845at 1939.317 kb on + strand, within MPMX20_01845at 1939.319 kb on + strand, within MPMX20_01845at 1939.319 kb on + strand, within MPMX20_01845at 1939.319 kb on + strand, within MPMX20_01845at 1939.319 kb on + strand, within MPMX20_01845at 1939.327 kb on - strand, within MPMX20_01845at 1939.327 kb on - strand, within MPMX20_01845at 1939.346 kb on + strand, within MPMX20_01845at 1939.395 kb on + strand, within MPMX20_01845at 1939.398 kb on + strand, within MPMX20_01845at 1939.518 kb on + strand, within MPMX20_01845at 1939.679 kb on + strand, within MPMX20_01846at 1939.679 kb on + strand, within MPMX20_01846at 1939.717 kb on - strand, within MPMX20_01846at 1939.759 kb on + strand, within MPMX20_01846at 1939.835 kb on + strand, within MPMX20_01846at 1939.849 kb on + strand, within MPMX20_01846at 1939.927 kb on + strandat 1940.032 kb on + strandat 1940.049 kb on + strandat 1940.279 kb on + strand, within MPMX20_01847at 1940.284 kb on + strand, within MPMX20_01847at 1940.284 kb on + strand, within MPMX20_01847at 1940.292 kb on - strand, within MPMX20_01847at 1940.292 kb on - strand, within MPMX20_01847at 1940.323 kb on + strand, within MPMX20_01847at 1940.331 kb on - strand, within MPMX20_01847at 1940.331 kb on - strand, within MPMX20_01847at 1940.454 kb on - strand, within MPMX20_01847at 1940.492 kb on + strand, within MPMX20_01847at 1940.492 kb on + strand, within MPMX20_01847at 1940.492 kb on + strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.520 kb on - strand, within MPMX20_01847at 1940.573 kb on + strand, within MPMX20_01847at 1940.591 kb on + strand, within MPMX20_01847at 1940.658 kb on - strand, within MPMX20_01847at 1940.670 kb on - strand, within MPMX20_01847at 1940.687 kb on + strand, within MPMX20_01847at 1940.714 kb on - strand, within MPMX20_01847at 1940.714 kb on - strand, within MPMX20_01847at 1940.758 kb on - strand, within MPMX20_01847at 1940.828 kb on + strand, within MPMX20_01847at 1940.828 kb on + strand, within MPMX20_01847at 1940.828 kb on + strand, within MPMX20_01847at 1940.828 kb on + strand, within MPMX20_01847at 1940.836 kb on - strand, within MPMX20_01847at 1940.858 kb on + strand, within MPMX20_01847at 1940.866 kb on - strand, within MPMX20_01847at 1940.867 kb on + strand, within MPMX20_01847at 1941.062 kb on - strand, within MPMX20_01847at 1941.062 kb on - strand, within MPMX20_01847at 1941.064 kb on + strand, within MPMX20_01847at 1941.142 kb on + strandat 1941.170 kb on + strandat 1941.170 kb on + strandat 1941.170 kb on + strandat 1941.170 kb on + strandat 1941.178 kb on - strandat 1941.178 kb on - strandat 1941.203 kb on + strandat 1941.338 kb on + strandat 1941.346 kb on - strandat 1941.384 kb on - strandat 1941.389 kb on - strandat 1941.394 kb on - strandat 1941.410 kb on + strandat 1941.410 kb on + strandat 1941.418 kb on - strandat 1941.418 kb on - strandat 1941.435 kb on + strandat 1941.443 kb on - strandat 1941.443 kb on - strandat 1941.450 kb on - strandat 1941.453 kb on - strandat 1941.483 kb on + strand, within MPMX20_01848at 1941.491 kb on - strand, within MPMX20_01848at 1941.501 kb on - strand, within MPMX20_01848at 1941.501 kb on - strand, within MPMX20_01848at 1941.543 kb on + strand, within MPMX20_01848at 1941.545 kb on + strand, within MPMX20_01848at 1941.555 kb on + strand, within MPMX20_01848at 1941.573 kb on + strand, within MPMX20_01848at 1941.601 kb on - strand, within MPMX20_01848at 1941.830 kb on + strand, within MPMX20_01848at 1941.838 kb on - strand, within MPMX20_01848at 1941.838 kb on - strand, within MPMX20_01848at 1941.840 kb on + strand, within MPMX20_01848at 1941.847 kb on + strand, within MPMX20_01848at 1941.849 kb on + strand, within MPMX20_01848at 1941.849 kb on + strand, within MPMX20_01848at 1941.849 kb on + strand, within MPMX20_01848at 1941.849 kb on + strand, within MPMX20_01848at 1941.855 kb on - strand, within MPMX20_01848at 1941.857 kb on - strand, within MPMX20_01848at 1941.857 kb on - strand, within MPMX20_01848at 1941.929 kb on + strand, within MPMX20_01848at 1941.960 kb on + strand, within MPMX20_01848at 1941.983 kb on + strand, within MPMX20_01848at 1942.139 kb on - strandat 1942.178 kb on - strand, within MPMX20_01849

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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1,939,014 + -1.9
1,939,014 + +0.6
1,939,014 + +1.0
1,939,014 + +0.3
1,939,022 - -0.6
1,939,105 - -0.4
1,939,199 + -0.7
1,939,203 + +1.8
1,939,212 - +0.1
1,939,212 - +0.8
1,939,254 - MPMX20_01845 0.15 +0.2
1,939,317 + MPMX20_01845 0.30 +0.6
1,939,319 + MPMX20_01845 0.30 -0.9
1,939,319 + MPMX20_01845 0.30 -2.9
1,939,319 + MPMX20_01845 0.30 -1.0
1,939,319 + MPMX20_01845 0.30 +1.7
1,939,327 - MPMX20_01845 0.32 -0.2
1,939,327 - MPMX20_01845 0.32 +0.3
1,939,346 + MPMX20_01845 0.37 -0.6
1,939,395 + MPMX20_01845 0.49 +0.2
1,939,398 + MPMX20_01845 0.50 +0.6
1,939,518 + MPMX20_01845 0.79 -0.1
1,939,679 + MPMX20_01846 0.11 -0.9
1,939,679 + MPMX20_01846 0.11 -0.1
1,939,717 - MPMX20_01846 0.25 +2.2
1,939,759 + MPMX20_01846 0.40 +1.8
1,939,835 + MPMX20_01846 0.67 -2.0
1,939,849 + MPMX20_01846 0.72 +0.7
1,939,927 + +1.0
1,940,032 + -0.5
1,940,049 + +1.5
1,940,279 + MPMX20_01847 0.24 +1.1
1,940,284 + MPMX20_01847 0.24 -0.1
1,940,284 + MPMX20_01847 0.24 -0.3
1,940,292 - MPMX20_01847 0.25 -1.7
1,940,292 - MPMX20_01847 0.25 -0.4
1,940,323 + MPMX20_01847 0.27 -0.6
1,940,331 - MPMX20_01847 0.28 -0.7
1,940,331 - MPMX20_01847 0.28 -0.3
1,940,454 - MPMX20_01847 0.37 -0.5
1,940,492 + MPMX20_01847 0.40 -0.3
1,940,492 + MPMX20_01847 0.40 -1.9
1,940,492 + MPMX20_01847 0.40 +7.4
1,940,500 - MPMX20_01847 0.41 +0.4
1,940,500 - MPMX20_01847 0.41 +0.4
1,940,500 - MPMX20_01847 0.41 -0.2
1,940,500 - MPMX20_01847 0.41 -1.4
1,940,500 - MPMX20_01847 0.41 -0.2
1,940,520 - MPMX20_01847 0.43 -1.3
1,940,573 + MPMX20_01847 0.47 -0.9
1,940,591 + MPMX20_01847 0.48 +0.3
1,940,658 - MPMX20_01847 0.54 +1.0
1,940,670 - MPMX20_01847 0.55 +0.3
1,940,687 + MPMX20_01847 0.56 +0.9
1,940,714 - MPMX20_01847 0.58 +0.7
1,940,714 - MPMX20_01847 0.58 +0.2
1,940,758 - MPMX20_01847 0.62 -0.9
1,940,828 + MPMX20_01847 0.67 +2.9
1,940,828 + MPMX20_01847 0.67 +5.8
1,940,828 + MPMX20_01847 0.67 -0.3
1,940,828 + MPMX20_01847 0.67 -0.3
1,940,836 - MPMX20_01847 0.68 -0.0
1,940,858 + MPMX20_01847 0.70 +0.7
1,940,866 - MPMX20_01847 0.70 +1.1
1,940,867 + MPMX20_01847 0.70 +0.2
1,941,062 - MPMX20_01847 0.86 +0.1
1,941,062 - MPMX20_01847 0.86 -1.9
1,941,064 + MPMX20_01847 0.86 +1.8
1,941,142 + +1.7
1,941,170 + -1.1
1,941,170 + -0.9
1,941,170 + -0.4
1,941,170 + -2.4
1,941,178 - -3.0
1,941,178 - +0.1
1,941,203 + -0.5
1,941,338 + +2.2
1,941,346 - -1.0
1,941,384 - -1.5
1,941,389 - +0.1
1,941,394 - -0.0
1,941,410 + -1.1
1,941,410 + +5.8
1,941,418 - -0.0
1,941,418 - -2.2
1,941,435 + -2.3
1,941,443 - -0.0
1,941,443 - -0.6
1,941,450 - -0.8
1,941,453 - -1.2
1,941,483 + MPMX20_01848 0.11 -1.1
1,941,491 - MPMX20_01848 0.12 +0.3
1,941,501 - MPMX20_01848 0.14 -1.0
1,941,501 - MPMX20_01848 0.14 -1.3
1,941,543 + MPMX20_01848 0.20 +0.1
1,941,545 + MPMX20_01848 0.21 -0.5
1,941,555 + MPMX20_01848 0.22 -0.9
1,941,573 + MPMX20_01848 0.25 -1.1
1,941,601 - MPMX20_01848 0.29 -0.3
1,941,830 + MPMX20_01848 0.65 -2.2
1,941,838 - MPMX20_01848 0.66 +0.0
1,941,838 - MPMX20_01848 0.66 -0.7
1,941,840 + MPMX20_01848 0.67 -0.1
1,941,847 + MPMX20_01848 0.68 -0.5
1,941,849 + MPMX20_01848 0.68 +1.1
1,941,849 + MPMX20_01848 0.68 +0.1
1,941,849 + MPMX20_01848 0.68 +0.4
1,941,849 + MPMX20_01848 0.68 +0.7
1,941,855 - MPMX20_01848 0.69 -0.3
1,941,857 - MPMX20_01848 0.69 +0.4
1,941,857 - MPMX20_01848 0.69 -0.1
1,941,929 + MPMX20_01848 0.81 +0.8
1,941,960 + MPMX20_01848 0.85 +0.2
1,941,983 + MPMX20_01848 0.89 +0.3
1,942,139 - -0.5
1,942,178 - MPMX20_01849 0.11 -0.8

Or see this region's nucleotide sequence