Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01845 and MPMX20_01846 are separated by 41 nucleotides MPMX20_01846 and MPMX20_01847 are separated by 55 nucleotides MPMX20_01847 and MPMX20_01848 are separated by 170 nucleotides MPMX20_01848 and MPMX20_01849 are separated by 9 nucleotides
MPMX20_01845: MPMX20_01845 - Peptide methionine sulfoxide reductase MsrB, at 1,939,193 to 1,939,606
_01845
MPMX20_01846: MPMX20_01846 - hypothetical protein, at 1,939,648 to 1,939,926
_01846
MPMX20_01847: MPMX20_01847 - Chitinase A1, at 1,939,982 to 1,941,241
_01847
MPMX20_01848: MPMX20_01848 - Nicotinamidase, at 1,941,412 to 1,942,053
_01848
MPMX20_01849: MPMX20_01849 - L-asparaginase 1, at 1,942,063 to 1,943,079
_01849
Position (kb)
1939
1940
1941
1942 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 1939.014 kb on + strand at 1939.014 kb on + strand at 1939.014 kb on + strand at 1939.014 kb on + strand at 1939.022 kb on - strand at 1939.105 kb on - strand at 1939.199 kb on + strand at 1939.203 kb on + strand at 1939.212 kb on - strand at 1939.212 kb on - strand at 1939.254 kb on - strand, within MPMX20_01845 at 1939.317 kb on + strand, within MPMX20_01845 at 1939.319 kb on + strand, within MPMX20_01845 at 1939.319 kb on + strand, within MPMX20_01845 at 1939.319 kb on + strand, within MPMX20_01845 at 1939.319 kb on + strand, within MPMX20_01845 at 1939.327 kb on - strand, within MPMX20_01845 at 1939.327 kb on - strand, within MPMX20_01845 at 1939.346 kb on + strand, within MPMX20_01845 at 1939.395 kb on + strand, within MPMX20_01845 at 1939.398 kb on + strand, within MPMX20_01845 at 1939.518 kb on + strand, within MPMX20_01845 at 1939.679 kb on + strand, within MPMX20_01846 at 1939.679 kb on + strand, within MPMX20_01846 at 1939.717 kb on - strand, within MPMX20_01846 at 1939.759 kb on + strand, within MPMX20_01846 at 1939.835 kb on + strand, within MPMX20_01846 at 1939.849 kb on + strand, within MPMX20_01846 at 1939.927 kb on + strand at 1940.032 kb on + strand at 1940.049 kb on + strand at 1940.279 kb on + strand, within MPMX20_01847 at 1940.284 kb on + strand, within MPMX20_01847 at 1940.284 kb on + strand, within MPMX20_01847 at 1940.292 kb on - strand, within MPMX20_01847 at 1940.292 kb on - strand, within MPMX20_01847 at 1940.323 kb on + strand, within MPMX20_01847 at 1940.331 kb on - strand, within MPMX20_01847 at 1940.331 kb on - strand, within MPMX20_01847 at 1940.454 kb on - strand, within MPMX20_01847 at 1940.492 kb on + strand, within MPMX20_01847 at 1940.492 kb on + strand, within MPMX20_01847 at 1940.492 kb on + strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.520 kb on - strand, within MPMX20_01847 at 1940.573 kb on + strand, within MPMX20_01847 at 1940.591 kb on + strand, within MPMX20_01847 at 1940.658 kb on - strand, within MPMX20_01847 at 1940.670 kb on - strand, within MPMX20_01847 at 1940.687 kb on + strand, within MPMX20_01847 at 1940.714 kb on - strand, within MPMX20_01847 at 1940.714 kb on - strand, within MPMX20_01847 at 1940.758 kb on - strand, within MPMX20_01847 at 1940.828 kb on + strand, within MPMX20_01847 at 1940.828 kb on + strand, within MPMX20_01847 at 1940.828 kb on + strand, within MPMX20_01847 at 1940.828 kb on + strand, within MPMX20_01847 at 1940.836 kb on - strand, within MPMX20_01847 at 1940.858 kb on + strand, within MPMX20_01847 at 1940.866 kb on - strand, within MPMX20_01847 at 1940.867 kb on + strand, within MPMX20_01847 at 1941.062 kb on - strand, within MPMX20_01847 at 1941.062 kb on - strand, within MPMX20_01847 at 1941.064 kb on + strand, within MPMX20_01847 at 1941.142 kb on + strand at 1941.170 kb on + strand at 1941.170 kb on + strand at 1941.170 kb on + strand at 1941.170 kb on + strand at 1941.178 kb on - strand at 1941.178 kb on - strand at 1941.203 kb on + strand at 1941.338 kb on + strand at 1941.346 kb on - strand at 1941.384 kb on - strand at 1941.389 kb on - strand at 1941.394 kb on - strand at 1941.410 kb on + strand at 1941.410 kb on + strand at 1941.418 kb on - strand at 1941.418 kb on - strand at 1941.435 kb on + strand at 1941.443 kb on - strand at 1941.443 kb on - strand at 1941.450 kb on - strand at 1941.453 kb on - strand at 1941.483 kb on + strand, within MPMX20_01848 at 1941.491 kb on - strand, within MPMX20_01848 at 1941.501 kb on - strand, within MPMX20_01848 at 1941.501 kb on - strand, within MPMX20_01848 at 1941.543 kb on + strand, within MPMX20_01848 at 1941.545 kb on + strand, within MPMX20_01848 at 1941.555 kb on + strand, within MPMX20_01848 at 1941.573 kb on + strand, within MPMX20_01848 at 1941.601 kb on - strand, within MPMX20_01848 at 1941.830 kb on + strand, within MPMX20_01848 at 1941.838 kb on - strand, within MPMX20_01848 at 1941.838 kb on - strand, within MPMX20_01848 at 1941.840 kb on + strand, within MPMX20_01848 at 1941.847 kb on + strand, within MPMX20_01848 at 1941.849 kb on + strand, within MPMX20_01848 at 1941.849 kb on + strand, within MPMX20_01848 at 1941.849 kb on + strand, within MPMX20_01848 at 1941.849 kb on + strand, within MPMX20_01848 at 1941.855 kb on - strand, within MPMX20_01848 at 1941.857 kb on - strand, within MPMX20_01848 at 1941.857 kb on - strand, within MPMX20_01848 at 1941.929 kb on + strand, within MPMX20_01848 at 1941.960 kb on + strand, within MPMX20_01848 at 1941.983 kb on + strand, within MPMX20_01848 at 1942.139 kb on - strand at 1942.178 kb on - strand, within MPMX20_01849
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 1,939,014 + -1.9 1,939,014 + +0.6 1,939,014 + +1.0 1,939,014 + +0.3 1,939,022 - -0.6 1,939,105 - -0.4 1,939,199 + -0.7 1,939,203 + +1.8 1,939,212 - +0.1 1,939,212 - +0.8 1,939,254 - MPMX20_01845 0.15 +0.2 1,939,317 + MPMX20_01845 0.30 +0.6 1,939,319 + MPMX20_01845 0.30 -0.9 1,939,319 + MPMX20_01845 0.30 -2.9 1,939,319 + MPMX20_01845 0.30 -1.0 1,939,319 + MPMX20_01845 0.30 +1.7 1,939,327 - MPMX20_01845 0.32 -0.2 1,939,327 - MPMX20_01845 0.32 +0.3 1,939,346 + MPMX20_01845 0.37 -0.6 1,939,395 + MPMX20_01845 0.49 +0.2 1,939,398 + MPMX20_01845 0.50 +0.6 1,939,518 + MPMX20_01845 0.79 -0.1 1,939,679 + MPMX20_01846 0.11 -0.9 1,939,679 + MPMX20_01846 0.11 -0.1 1,939,717 - MPMX20_01846 0.25 +2.2 1,939,759 + MPMX20_01846 0.40 +1.8 1,939,835 + MPMX20_01846 0.67 -2.0 1,939,849 + MPMX20_01846 0.72 +0.7 1,939,927 + +1.0 1,940,032 + -0.5 1,940,049 + +1.5 1,940,279 + MPMX20_01847 0.24 +1.1 1,940,284 + MPMX20_01847 0.24 -0.1 1,940,284 + MPMX20_01847 0.24 -0.3 1,940,292 - MPMX20_01847 0.25 -1.7 1,940,292 - MPMX20_01847 0.25 -0.4 1,940,323 + MPMX20_01847 0.27 -0.6 1,940,331 - MPMX20_01847 0.28 -0.7 1,940,331 - MPMX20_01847 0.28 -0.3 1,940,454 - MPMX20_01847 0.37 -0.5 1,940,492 + MPMX20_01847 0.40 -0.3 1,940,492 + MPMX20_01847 0.40 -1.9 1,940,492 + MPMX20_01847 0.40 +7.4 1,940,500 - MPMX20_01847 0.41 +0.4 1,940,500 - MPMX20_01847 0.41 +0.4 1,940,500 - MPMX20_01847 0.41 -0.2 1,940,500 - MPMX20_01847 0.41 -1.4 1,940,500 - MPMX20_01847 0.41 -0.2 1,940,520 - MPMX20_01847 0.43 -1.3 1,940,573 + MPMX20_01847 0.47 -0.9 1,940,591 + MPMX20_01847 0.48 +0.3 1,940,658 - MPMX20_01847 0.54 +1.0 1,940,670 - MPMX20_01847 0.55 +0.3 1,940,687 + MPMX20_01847 0.56 +0.9 1,940,714 - MPMX20_01847 0.58 +0.7 1,940,714 - MPMX20_01847 0.58 +0.2 1,940,758 - MPMX20_01847 0.62 -0.9 1,940,828 + MPMX20_01847 0.67 +2.9 1,940,828 + MPMX20_01847 0.67 +5.8 1,940,828 + MPMX20_01847 0.67 -0.3 1,940,828 + MPMX20_01847 0.67 -0.3 1,940,836 - MPMX20_01847 0.68 -0.0 1,940,858 + MPMX20_01847 0.70 +0.7 1,940,866 - MPMX20_01847 0.70 +1.1 1,940,867 + MPMX20_01847 0.70 +0.2 1,941,062 - MPMX20_01847 0.86 +0.1 1,941,062 - MPMX20_01847 0.86 -1.9 1,941,064 + MPMX20_01847 0.86 +1.8 1,941,142 + +1.7 1,941,170 + -1.1 1,941,170 + -0.9 1,941,170 + -0.4 1,941,170 + -2.4 1,941,178 - -3.0 1,941,178 - +0.1 1,941,203 + -0.5 1,941,338 + +2.2 1,941,346 - -1.0 1,941,384 - -1.5 1,941,389 - +0.1 1,941,394 - -0.0 1,941,410 + -1.1 1,941,410 + +5.8 1,941,418 - -0.0 1,941,418 - -2.2 1,941,435 + -2.3 1,941,443 - -0.0 1,941,443 - -0.6 1,941,450 - -0.8 1,941,453 - -1.2 1,941,483 + MPMX20_01848 0.11 -1.1 1,941,491 - MPMX20_01848 0.12 +0.3 1,941,501 - MPMX20_01848 0.14 -1.0 1,941,501 - MPMX20_01848 0.14 -1.3 1,941,543 + MPMX20_01848 0.20 +0.1 1,941,545 + MPMX20_01848 0.21 -0.5 1,941,555 + MPMX20_01848 0.22 -0.9 1,941,573 + MPMX20_01848 0.25 -1.1 1,941,601 - MPMX20_01848 0.29 -0.3 1,941,830 + MPMX20_01848 0.65 -2.2 1,941,838 - MPMX20_01848 0.66 +0.0 1,941,838 - MPMX20_01848 0.66 -0.7 1,941,840 + MPMX20_01848 0.67 -0.1 1,941,847 + MPMX20_01848 0.68 -0.5 1,941,849 + MPMX20_01848 0.68 +1.1 1,941,849 + MPMX20_01848 0.68 +0.1 1,941,849 + MPMX20_01848 0.68 +0.4 1,941,849 + MPMX20_01848 0.68 +0.7 1,941,855 - MPMX20_01848 0.69 -0.3 1,941,857 - MPMX20_01848 0.69 +0.4 1,941,857 - MPMX20_01848 0.69 -0.1 1,941,929 + MPMX20_01848 0.81 +0.8 1,941,960 + MPMX20_01848 0.85 +0.2 1,941,983 + MPMX20_01848 0.89 +0.3 1,942,139 - -0.5 1,942,178 - MPMX20_01849 0.11 -0.8
Or see this region's nucleotide sequence