Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01708

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01707 and MPMX20_01708 are separated by 5 nucleotidesMPMX20_01708 and MPMX20_01709 are separated by 223 nucleotides MPMX20_01707: MPMX20_01707 - Iron uptake system component EfeO, at 1,806,001 to 1,807,128 _01707 MPMX20_01708: MPMX20_01708 - Deferrochelatase/peroxidase EfeB, at 1,807,134 to 1,808,417 _01708 MPMX20_01709: MPMX20_01709 - Protein PhoH, at 1,808,641 to 1,809,705 _01709 Position (kb) 1807 1808 1809Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1806.149 kb on - strand, within MPMX20_01707at 1806.195 kb on + strand, within MPMX20_01707at 1806.203 kb on - strand, within MPMX20_01707at 1806.254 kb on + strand, within MPMX20_01707at 1806.279 kb on + strand, within MPMX20_01707at 1806.287 kb on - strand, within MPMX20_01707at 1806.295 kb on - strand, within MPMX20_01707at 1806.324 kb on + strand, within MPMX20_01707at 1806.326 kb on - strand, within MPMX20_01707at 1806.332 kb on - strand, within MPMX20_01707at 1806.356 kb on - strand, within MPMX20_01707at 1806.382 kb on + strand, within MPMX20_01707at 1806.382 kb on + strand, within MPMX20_01707at 1806.382 kb on + strand, within MPMX20_01707at 1806.391 kb on + strand, within MPMX20_01707at 1806.399 kb on - strand, within MPMX20_01707at 1806.466 kb on + strand, within MPMX20_01707at 1806.466 kb on + strand, within MPMX20_01707at 1806.474 kb on - strand, within MPMX20_01707at 1806.643 kb on + strand, within MPMX20_01707at 1806.677 kb on - strand, within MPMX20_01707at 1806.796 kb on + strand, within MPMX20_01707at 1806.849 kb on - strand, within MPMX20_01707at 1807.117 kb on + strandat 1807.192 kb on + strandat 1807.200 kb on + strandat 1807.200 kb on - strandat 1807.200 kb on - strandat 1807.200 kb on - strandat 1807.213 kb on + strandat 1807.218 kb on + strandat 1807.221 kb on - strandat 1807.221 kb on - strandat 1807.223 kb on + strandat 1807.231 kb on - strandat 1807.284 kb on + strand, within MPMX20_01708at 1807.285 kb on - strand, within MPMX20_01708at 1807.286 kb on - strand, within MPMX20_01708at 1807.286 kb on - strand, within MPMX20_01708at 1807.286 kb on - strand, within MPMX20_01708at 1807.357 kb on + strand, within MPMX20_01708at 1807.364 kb on + strand, within MPMX20_01708at 1807.364 kb on + strand, within MPMX20_01708at 1807.474 kb on + strand, within MPMX20_01708at 1807.474 kb on + strand, within MPMX20_01708at 1807.474 kb on + strand, within MPMX20_01708at 1807.518 kb on - strand, within MPMX20_01708at 1807.561 kb on + strand, within MPMX20_01708at 1807.571 kb on + strand, within MPMX20_01708at 1807.656 kb on + strand, within MPMX20_01708at 1807.685 kb on + strand, within MPMX20_01708at 1807.752 kb on - strand, within MPMX20_01708at 1807.752 kb on - strand, within MPMX20_01708at 1807.805 kb on + strand, within MPMX20_01708at 1807.820 kb on - strand, within MPMX20_01708at 1807.870 kb on + strand, within MPMX20_01708at 1807.904 kb on + strand, within MPMX20_01708at 1807.914 kb on + strand, within MPMX20_01708at 1807.928 kb on + strand, within MPMX20_01708at 1807.948 kb on - strand, within MPMX20_01708at 1808.011 kb on - strand, within MPMX20_01708at 1808.040 kb on - strand, within MPMX20_01708at 1808.085 kb on + strand, within MPMX20_01708at 1808.126 kb on - strand, within MPMX20_01708at 1808.162 kb on + strand, within MPMX20_01708at 1808.190 kb on + strand, within MPMX20_01708at 1808.218 kb on + strand, within MPMX20_01708at 1808.266 kb on + strand, within MPMX20_01708at 1808.289 kb on + strandat 1808.297 kb on - strandat 1808.384 kb on + strandat 1808.392 kb on - strandat 1808.392 kb on - strandat 1808.514 kb on - strandat 1808.525 kb on + strandat 1808.525 kb on + strandat 1808.525 kb on + strandat 1808.525 kb on + strandat 1808.533 kb on - strandat 1808.533 kb on - strandat 1808.571 kb on + strandat 1808.579 kb on - strandat 1808.579 kb on - strandat 1808.579 kb on - strandat 1808.589 kb on - strandat 1808.594 kb on - strandat 1808.594 kb on - strandat 1808.633 kb on - strandat 1808.654 kb on + strandat 1808.662 kb on - strandat 1808.662 kb on - strandat 1808.662 kb on - strandat 1808.662 kb on - strandat 1808.665 kb on + strandat 1808.665 kb on + strandat 1808.698 kb on + strandat 1808.706 kb on - strandat 1808.706 kb on - strandat 1808.706 kb on - strandat 1808.778 kb on - strand, within MPMX20_01709at 1808.836 kb on + strand, within MPMX20_01709at 1808.843 kb on + strand, within MPMX20_01709at 1808.859 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.987 kb on + strand, within MPMX20_01709at 1808.995 kb on - strand, within MPMX20_01709at 1808.995 kb on - strand, within MPMX20_01709at 1808.995 kb on - strand, within MPMX20_01709at 1808.995 kb on - strand, within MPMX20_01709at 1808.995 kb on - strand, within MPMX20_01709at 1808.995 kb on - strand, within MPMX20_01709at 1808.995 kb on - strand, within MPMX20_01709at 1808.995 kb on - strand, within MPMX20_01709at 1809.025 kb on + strand, within MPMX20_01709at 1809.030 kb on + strand, within MPMX20_01709at 1809.057 kb on + strand, within MPMX20_01709at 1809.058 kb on + strand, within MPMX20_01709at 1809.058 kb on + strand, within MPMX20_01709at 1809.066 kb on - strand, within MPMX20_01709at 1809.066 kb on - strand, within MPMX20_01709at 1809.096 kb on + strand, within MPMX20_01709at 1809.111 kb on - strand, within MPMX20_01709at 1809.122 kb on - strand, within MPMX20_01709at 1809.139 kb on - strand, within MPMX20_01709at 1809.241 kb on - strand, within MPMX20_01709at 1809.273 kb on + strand, within MPMX20_01709at 1809.318 kb on + strand, within MPMX20_01709at 1809.326 kb on - strand, within MPMX20_01709at 1809.326 kb on - strand, within MPMX20_01709at 1809.326 kb on - strand, within MPMX20_01709at 1809.326 kb on - strand, within MPMX20_01709at 1809.337 kb on - strand, within MPMX20_01709at 1809.337 kb on - strand, within MPMX20_01709at 1809.337 kb on - strand, within MPMX20_01709at 1809.337 kb on - strand, within MPMX20_01709at 1809.350 kb on - strand, within MPMX20_01709at 1809.362 kb on + strand, within MPMX20_01709at 1809.369 kb on + strand, within MPMX20_01709at 1809.372 kb on + strand, within MPMX20_01709at 1809.372 kb on + strand, within MPMX20_01709at 1809.375 kb on - strand, within MPMX20_01709at 1809.407 kb on - strand, within MPMX20_01709

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
remove
1,806,149 - MPMX20_01707 0.13 -0.9
1,806,195 + MPMX20_01707 0.17 +0.3
1,806,203 - MPMX20_01707 0.18 -0.2
1,806,254 + MPMX20_01707 0.22 -0.3
1,806,279 + MPMX20_01707 0.25 -0.4
1,806,287 - MPMX20_01707 0.25 -0.6
1,806,295 - MPMX20_01707 0.26 -1.0
1,806,324 + MPMX20_01707 0.29 +1.2
1,806,326 - MPMX20_01707 0.29 -0.5
1,806,332 - MPMX20_01707 0.29 +4.2
1,806,356 - MPMX20_01707 0.31 -2.0
1,806,382 + MPMX20_01707 0.34 +0.0
1,806,382 + MPMX20_01707 0.34 -0.9
1,806,382 + MPMX20_01707 0.34 +0.5
1,806,391 + MPMX20_01707 0.35 -0.4
1,806,399 - MPMX20_01707 0.35 -0.4
1,806,466 + MPMX20_01707 0.41 -0.6
1,806,466 + MPMX20_01707 0.41 -0.8
1,806,474 - MPMX20_01707 0.42 -0.7
1,806,643 + MPMX20_01707 0.57 +0.2
1,806,677 - MPMX20_01707 0.60 -0.1
1,806,796 + MPMX20_01707 0.70 -0.2
1,806,849 - MPMX20_01707 0.75 +0.4
1,807,117 + +0.9
1,807,192 + +1.6
1,807,200 + -1.8
1,807,200 - +0.6
1,807,200 - -1.3
1,807,200 - -0.2
1,807,213 + +1.0
1,807,218 + -0.0
1,807,221 - +2.2
1,807,221 - +1.1
1,807,223 + +0.6
1,807,231 - -1.4
1,807,284 + MPMX20_01708 0.12 +1.4
1,807,285 - MPMX20_01708 0.12 +0.3
1,807,286 - MPMX20_01708 0.12 -0.4
1,807,286 - MPMX20_01708 0.12 +0.0
1,807,286 - MPMX20_01708 0.12 +1.2
1,807,357 + MPMX20_01708 0.17 +0.3
1,807,364 + MPMX20_01708 0.18 +7.2
1,807,364 + MPMX20_01708 0.18 -0.3
1,807,474 + MPMX20_01708 0.26 +1.6
1,807,474 + MPMX20_01708 0.26 -1.7
1,807,474 + MPMX20_01708 0.26 +0.1
1,807,518 - MPMX20_01708 0.30 +0.0
1,807,561 + MPMX20_01708 0.33 +0.4
1,807,571 + MPMX20_01708 0.34 -0.8
1,807,656 + MPMX20_01708 0.41 +0.3
1,807,685 + MPMX20_01708 0.43 +0.0
1,807,752 - MPMX20_01708 0.48 -1.3
1,807,752 - MPMX20_01708 0.48 +1.1
1,807,805 + MPMX20_01708 0.52 -0.6
1,807,820 - MPMX20_01708 0.53 +0.4
1,807,870 + MPMX20_01708 0.57 -0.2
1,807,904 + MPMX20_01708 0.60 +1.3
1,807,914 + MPMX20_01708 0.61 +0.5
1,807,928 + MPMX20_01708 0.62 -1.2
1,807,948 - MPMX20_01708 0.63 -1.3
1,808,011 - MPMX20_01708 0.68 +0.1
1,808,040 - MPMX20_01708 0.71 -0.6
1,808,085 + MPMX20_01708 0.74 +0.0
1,808,126 - MPMX20_01708 0.77 +0.8
1,808,162 + MPMX20_01708 0.80 +0.5
1,808,190 + MPMX20_01708 0.82 +0.0
1,808,218 + MPMX20_01708 0.84 +0.1
1,808,266 + MPMX20_01708 0.88 +0.3
1,808,289 + -0.6
1,808,297 - -2.7
1,808,384 + -0.8
1,808,392 - +0.0
1,808,392 - -1.5
1,808,514 - -2.5
1,808,525 + -1.1
1,808,525 + +0.3
1,808,525 + -0.9
1,808,525 + +0.0
1,808,533 - -0.5
1,808,533 - +0.1
1,808,571 + -0.8
1,808,579 - +1.8
1,808,579 - -0.9
1,808,579 - +0.7
1,808,589 - -1.7
1,808,594 - +1.1
1,808,594 - +1.0
1,808,633 - -0.1
1,808,654 + -1.8
1,808,662 - +1.6
1,808,662 - -0.4
1,808,662 - +0.5
1,808,662 - -0.2
1,808,665 + +0.5
1,808,665 + -1.2
1,808,698 + -1.9
1,808,706 - -0.3
1,808,706 - +0.0
1,808,706 - -0.7
1,808,778 - MPMX20_01709 0.13 +0.3
1,808,836 + MPMX20_01709 0.18 +1.9
1,808,843 + MPMX20_01709 0.19 -1.0
1,808,859 + MPMX20_01709 0.20 -0.6
1,808,987 + MPMX20_01709 0.32 +0.1
1,808,987 + MPMX20_01709 0.32 +0.1
1,808,987 + MPMX20_01709 0.32 -0.7
1,808,987 + MPMX20_01709 0.32 +1.0
1,808,987 + MPMX20_01709 0.32 -0.7
1,808,987 + MPMX20_01709 0.32 +0.9
1,808,987 + MPMX20_01709 0.32 -0.9
1,808,987 + MPMX20_01709 0.32 -0.2
1,808,987 + MPMX20_01709 0.32 +0.5
1,808,987 + MPMX20_01709 0.32 -0.2
1,808,987 + MPMX20_01709 0.32 -0.2
1,808,987 + MPMX20_01709 0.32 +0.1
1,808,987 + MPMX20_01709 0.32 -0.3
1,808,995 - MPMX20_01709 0.33 -0.7
1,808,995 - MPMX20_01709 0.33 -0.2
1,808,995 - MPMX20_01709 0.33 +2.3
1,808,995 - MPMX20_01709 0.33 -0.4
1,808,995 - MPMX20_01709 0.33 -1.8
1,808,995 - MPMX20_01709 0.33 +0.2
1,808,995 - MPMX20_01709 0.33 -1.5
1,808,995 - MPMX20_01709 0.33 +1.3
1,809,025 + MPMX20_01709 0.36 +0.3
1,809,030 + MPMX20_01709 0.37 -0.9
1,809,057 + MPMX20_01709 0.39 -0.4
1,809,058 + MPMX20_01709 0.39 -2.7
1,809,058 + MPMX20_01709 0.39 -0.9
1,809,066 - MPMX20_01709 0.40 -0.1
1,809,066 - MPMX20_01709 0.40 -1.1
1,809,096 + MPMX20_01709 0.43 +5.3
1,809,111 - MPMX20_01709 0.44 +1.7
1,809,122 - MPMX20_01709 0.45 +0.2
1,809,139 - MPMX20_01709 0.47 +0.3
1,809,241 - MPMX20_01709 0.56 -0.9
1,809,273 + MPMX20_01709 0.59 -1.0
1,809,318 + MPMX20_01709 0.64 -0.6
1,809,326 - MPMX20_01709 0.64 -1.3
1,809,326 - MPMX20_01709 0.64 +0.7
1,809,326 - MPMX20_01709 0.64 +1.6
1,809,326 - MPMX20_01709 0.64 -0.8
1,809,337 - MPMX20_01709 0.65 -0.8
1,809,337 - MPMX20_01709 0.65 +1.6
1,809,337 - MPMX20_01709 0.65 +1.9
1,809,337 - MPMX20_01709 0.65 +3.2
1,809,350 - MPMX20_01709 0.67 -0.6
1,809,362 + MPMX20_01709 0.68 +0.0
1,809,369 + MPMX20_01709 0.68 +0.8
1,809,372 + MPMX20_01709 0.69 -0.6
1,809,372 + MPMX20_01709 0.69 -1.1
1,809,375 - MPMX20_01709 0.69 -0.4
1,809,407 - MPMX20_01709 0.72 -0.8

Or see this region's nucleotide sequence