Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01707 and MPMX20_01708 are separated by 5 nucleotides MPMX20_01708 and MPMX20_01709 are separated by 223 nucleotides
MPMX20_01707: MPMX20_01707 - Iron uptake system component EfeO, at 1,806,001 to 1,807,128
_01707
MPMX20_01708: MPMX20_01708 - Deferrochelatase/peroxidase EfeB, at 1,807,134 to 1,808,417
_01708
MPMX20_01709: MPMX20_01709 - Protein PhoH, at 1,808,641 to 1,809,705
_01709
Position (kb)
1807
1808
1809 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 1806.149 kb on - strand, within MPMX20_01707 at 1806.195 kb on + strand, within MPMX20_01707 at 1806.203 kb on - strand, within MPMX20_01707 at 1806.254 kb on + strand, within MPMX20_01707 at 1806.279 kb on + strand, within MPMX20_01707 at 1806.287 kb on - strand, within MPMX20_01707 at 1806.295 kb on - strand, within MPMX20_01707 at 1806.324 kb on + strand, within MPMX20_01707 at 1806.326 kb on - strand, within MPMX20_01707 at 1806.332 kb on - strand, within MPMX20_01707 at 1806.356 kb on - strand, within MPMX20_01707 at 1806.382 kb on + strand, within MPMX20_01707 at 1806.382 kb on + strand, within MPMX20_01707 at 1806.382 kb on + strand, within MPMX20_01707 at 1806.391 kb on + strand, within MPMX20_01707 at 1806.399 kb on - strand, within MPMX20_01707 at 1806.466 kb on + strand, within MPMX20_01707 at 1806.466 kb on + strand, within MPMX20_01707 at 1806.474 kb on - strand, within MPMX20_01707 at 1806.643 kb on + strand, within MPMX20_01707 at 1806.677 kb on - strand, within MPMX20_01707 at 1806.796 kb on + strand, within MPMX20_01707 at 1806.849 kb on - strand, within MPMX20_01707 at 1807.117 kb on + strand at 1807.192 kb on + strand at 1807.200 kb on + strand at 1807.200 kb on - strand at 1807.200 kb on - strand at 1807.200 kb on - strand at 1807.213 kb on + strand at 1807.218 kb on + strand at 1807.221 kb on - strand at 1807.221 kb on - strand at 1807.223 kb on + strand at 1807.231 kb on - strand at 1807.284 kb on + strand, within MPMX20_01708 at 1807.285 kb on - strand, within MPMX20_01708 at 1807.286 kb on - strand, within MPMX20_01708 at 1807.286 kb on - strand, within MPMX20_01708 at 1807.286 kb on - strand, within MPMX20_01708 at 1807.357 kb on + strand, within MPMX20_01708 at 1807.364 kb on + strand, within MPMX20_01708 at 1807.364 kb on + strand, within MPMX20_01708 at 1807.474 kb on + strand, within MPMX20_01708 at 1807.474 kb on + strand, within MPMX20_01708 at 1807.474 kb on + strand, within MPMX20_01708 at 1807.518 kb on - strand, within MPMX20_01708 at 1807.561 kb on + strand, within MPMX20_01708 at 1807.571 kb on + strand, within MPMX20_01708 at 1807.656 kb on + strand, within MPMX20_01708 at 1807.685 kb on + strand, within MPMX20_01708 at 1807.752 kb on - strand, within MPMX20_01708 at 1807.752 kb on - strand, within MPMX20_01708 at 1807.805 kb on + strand, within MPMX20_01708 at 1807.820 kb on - strand, within MPMX20_01708 at 1807.870 kb on + strand, within MPMX20_01708 at 1807.904 kb on + strand, within MPMX20_01708 at 1807.914 kb on + strand, within MPMX20_01708 at 1807.928 kb on + strand, within MPMX20_01708 at 1807.948 kb on - strand, within MPMX20_01708 at 1808.011 kb on - strand, within MPMX20_01708 at 1808.040 kb on - strand, within MPMX20_01708 at 1808.085 kb on + strand, within MPMX20_01708 at 1808.126 kb on - strand, within MPMX20_01708 at 1808.162 kb on + strand, within MPMX20_01708 at 1808.190 kb on + strand, within MPMX20_01708 at 1808.218 kb on + strand, within MPMX20_01708 at 1808.266 kb on + strand, within MPMX20_01708 at 1808.289 kb on + strand at 1808.297 kb on - strand at 1808.384 kb on + strand at 1808.392 kb on - strand at 1808.392 kb on - strand at 1808.514 kb on - strand at 1808.525 kb on + strand at 1808.525 kb on + strand at 1808.525 kb on + strand at 1808.525 kb on + strand at 1808.533 kb on - strand at 1808.533 kb on - strand at 1808.571 kb on + strand at 1808.579 kb on - strand at 1808.579 kb on - strand at 1808.579 kb on - strand at 1808.589 kb on - strand at 1808.594 kb on - strand at 1808.594 kb on - strand at 1808.633 kb on - strand at 1808.654 kb on + strand at 1808.662 kb on - strand at 1808.662 kb on - strand at 1808.662 kb on - strand at 1808.662 kb on - strand at 1808.665 kb on + strand at 1808.665 kb on + strand at 1808.698 kb on + strand at 1808.706 kb on - strand at 1808.706 kb on - strand at 1808.706 kb on - strand at 1808.778 kb on - strand, within MPMX20_01709 at 1808.836 kb on + strand, within MPMX20_01709 at 1808.843 kb on + strand, within MPMX20_01709 at 1808.859 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1809.025 kb on + strand, within MPMX20_01709 at 1809.030 kb on + strand, within MPMX20_01709 at 1809.057 kb on + strand, within MPMX20_01709 at 1809.058 kb on + strand, within MPMX20_01709 at 1809.058 kb on + strand, within MPMX20_01709 at 1809.066 kb on - strand, within MPMX20_01709 at 1809.066 kb on - strand, within MPMX20_01709 at 1809.096 kb on + strand, within MPMX20_01709 at 1809.111 kb on - strand, within MPMX20_01709 at 1809.122 kb on - strand, within MPMX20_01709 at 1809.139 kb on - strand, within MPMX20_01709 at 1809.241 kb on - strand, within MPMX20_01709 at 1809.273 kb on + strand, within MPMX20_01709 at 1809.318 kb on + strand, within MPMX20_01709 at 1809.326 kb on - strand, within MPMX20_01709 at 1809.326 kb on - strand, within MPMX20_01709 at 1809.326 kb on - strand, within MPMX20_01709 at 1809.326 kb on - strand, within MPMX20_01709 at 1809.337 kb on - strand, within MPMX20_01709 at 1809.337 kb on - strand, within MPMX20_01709 at 1809.337 kb on - strand, within MPMX20_01709 at 1809.337 kb on - strand, within MPMX20_01709 at 1809.350 kb on - strand, within MPMX20_01709 at 1809.362 kb on + strand, within MPMX20_01709 at 1809.369 kb on + strand, within MPMX20_01709 at 1809.372 kb on + strand, within MPMX20_01709 at 1809.372 kb on + strand, within MPMX20_01709 at 1809.375 kb on - strand, within MPMX20_01709 at 1809.407 kb on - strand, within MPMX20_01709
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 1,806,149 - MPMX20_01707 0.13 -0.9 1,806,195 + MPMX20_01707 0.17 +0.3 1,806,203 - MPMX20_01707 0.18 -0.2 1,806,254 + MPMX20_01707 0.22 -0.3 1,806,279 + MPMX20_01707 0.25 -0.4 1,806,287 - MPMX20_01707 0.25 -0.6 1,806,295 - MPMX20_01707 0.26 -1.0 1,806,324 + MPMX20_01707 0.29 +1.2 1,806,326 - MPMX20_01707 0.29 -0.5 1,806,332 - MPMX20_01707 0.29 +4.2 1,806,356 - MPMX20_01707 0.31 -2.0 1,806,382 + MPMX20_01707 0.34 +0.0 1,806,382 + MPMX20_01707 0.34 -0.9 1,806,382 + MPMX20_01707 0.34 +0.5 1,806,391 + MPMX20_01707 0.35 -0.4 1,806,399 - MPMX20_01707 0.35 -0.4 1,806,466 + MPMX20_01707 0.41 -0.6 1,806,466 + MPMX20_01707 0.41 -0.8 1,806,474 - MPMX20_01707 0.42 -0.7 1,806,643 + MPMX20_01707 0.57 +0.2 1,806,677 - MPMX20_01707 0.60 -0.1 1,806,796 + MPMX20_01707 0.70 -0.2 1,806,849 - MPMX20_01707 0.75 +0.4 1,807,117 + +0.9 1,807,192 + +1.6 1,807,200 + -1.8 1,807,200 - +0.6 1,807,200 - -1.3 1,807,200 - -0.2 1,807,213 + +1.0 1,807,218 + -0.0 1,807,221 - +2.2 1,807,221 - +1.1 1,807,223 + +0.6 1,807,231 - -1.4 1,807,284 + MPMX20_01708 0.12 +1.4 1,807,285 - MPMX20_01708 0.12 +0.3 1,807,286 - MPMX20_01708 0.12 -0.4 1,807,286 - MPMX20_01708 0.12 +0.0 1,807,286 - MPMX20_01708 0.12 +1.2 1,807,357 + MPMX20_01708 0.17 +0.3 1,807,364 + MPMX20_01708 0.18 +7.2 1,807,364 + MPMX20_01708 0.18 -0.3 1,807,474 + MPMX20_01708 0.26 +1.6 1,807,474 + MPMX20_01708 0.26 -1.7 1,807,474 + MPMX20_01708 0.26 +0.1 1,807,518 - MPMX20_01708 0.30 +0.0 1,807,561 + MPMX20_01708 0.33 +0.4 1,807,571 + MPMX20_01708 0.34 -0.8 1,807,656 + MPMX20_01708 0.41 +0.3 1,807,685 + MPMX20_01708 0.43 +0.0 1,807,752 - MPMX20_01708 0.48 -1.3 1,807,752 - MPMX20_01708 0.48 +1.1 1,807,805 + MPMX20_01708 0.52 -0.6 1,807,820 - MPMX20_01708 0.53 +0.4 1,807,870 + MPMX20_01708 0.57 -0.2 1,807,904 + MPMX20_01708 0.60 +1.3 1,807,914 + MPMX20_01708 0.61 +0.5 1,807,928 + MPMX20_01708 0.62 -1.2 1,807,948 - MPMX20_01708 0.63 -1.3 1,808,011 - MPMX20_01708 0.68 +0.1 1,808,040 - MPMX20_01708 0.71 -0.6 1,808,085 + MPMX20_01708 0.74 +0.0 1,808,126 - MPMX20_01708 0.77 +0.8 1,808,162 + MPMX20_01708 0.80 +0.5 1,808,190 + MPMX20_01708 0.82 +0.0 1,808,218 + MPMX20_01708 0.84 +0.1 1,808,266 + MPMX20_01708 0.88 +0.3 1,808,289 + -0.6 1,808,297 - -2.7 1,808,384 + -0.8 1,808,392 - +0.0 1,808,392 - -1.5 1,808,514 - -2.5 1,808,525 + -1.1 1,808,525 + +0.3 1,808,525 + -0.9 1,808,525 + +0.0 1,808,533 - -0.5 1,808,533 - +0.1 1,808,571 + -0.8 1,808,579 - +1.8 1,808,579 - -0.9 1,808,579 - +0.7 1,808,589 - -1.7 1,808,594 - +1.1 1,808,594 - +1.0 1,808,633 - -0.1 1,808,654 + -1.8 1,808,662 - +1.6 1,808,662 - -0.4 1,808,662 - +0.5 1,808,662 - -0.2 1,808,665 + +0.5 1,808,665 + -1.2 1,808,698 + -1.9 1,808,706 - -0.3 1,808,706 - +0.0 1,808,706 - -0.7 1,808,778 - MPMX20_01709 0.13 +0.3 1,808,836 + MPMX20_01709 0.18 +1.9 1,808,843 + MPMX20_01709 0.19 -1.0 1,808,859 + MPMX20_01709 0.20 -0.6 1,808,987 + MPMX20_01709 0.32 +0.1 1,808,987 + MPMX20_01709 0.32 +0.1 1,808,987 + MPMX20_01709 0.32 -0.7 1,808,987 + MPMX20_01709 0.32 +1.0 1,808,987 + MPMX20_01709 0.32 -0.7 1,808,987 + MPMX20_01709 0.32 +0.9 1,808,987 + MPMX20_01709 0.32 -0.9 1,808,987 + MPMX20_01709 0.32 -0.2 1,808,987 + MPMX20_01709 0.32 +0.5 1,808,987 + MPMX20_01709 0.32 -0.2 1,808,987 + MPMX20_01709 0.32 -0.2 1,808,987 + MPMX20_01709 0.32 +0.1 1,808,987 + MPMX20_01709 0.32 -0.3 1,808,995 - MPMX20_01709 0.33 -0.7 1,808,995 - MPMX20_01709 0.33 -0.2 1,808,995 - MPMX20_01709 0.33 +2.3 1,808,995 - MPMX20_01709 0.33 -0.4 1,808,995 - MPMX20_01709 0.33 -1.8 1,808,995 - MPMX20_01709 0.33 +0.2 1,808,995 - MPMX20_01709 0.33 -1.5 1,808,995 - MPMX20_01709 0.33 +1.3 1,809,025 + MPMX20_01709 0.36 +0.3 1,809,030 + MPMX20_01709 0.37 -0.9 1,809,057 + MPMX20_01709 0.39 -0.4 1,809,058 + MPMX20_01709 0.39 -2.7 1,809,058 + MPMX20_01709 0.39 -0.9 1,809,066 - MPMX20_01709 0.40 -0.1 1,809,066 - MPMX20_01709 0.40 -1.1 1,809,096 + MPMX20_01709 0.43 +5.3 1,809,111 - MPMX20_01709 0.44 +1.7 1,809,122 - MPMX20_01709 0.45 +0.2 1,809,139 - MPMX20_01709 0.47 +0.3 1,809,241 - MPMX20_01709 0.56 -0.9 1,809,273 + MPMX20_01709 0.59 -1.0 1,809,318 + MPMX20_01709 0.64 -0.6 1,809,326 - MPMX20_01709 0.64 -1.3 1,809,326 - MPMX20_01709 0.64 +0.7 1,809,326 - MPMX20_01709 0.64 +1.6 1,809,326 - MPMX20_01709 0.64 -0.8 1,809,337 - MPMX20_01709 0.65 -0.8 1,809,337 - MPMX20_01709 0.65 +1.6 1,809,337 - MPMX20_01709 0.65 +1.9 1,809,337 - MPMX20_01709 0.65 +3.2 1,809,350 - MPMX20_01709 0.67 -0.6 1,809,362 + MPMX20_01709 0.68 +0.0 1,809,369 + MPMX20_01709 0.68 +0.8 1,809,372 + MPMX20_01709 0.69 -0.6 1,809,372 + MPMX20_01709 0.69 -1.1 1,809,375 - MPMX20_01709 0.69 -0.4 1,809,407 - MPMX20_01709 0.72 -0.8
Or see this region's nucleotide sequence