Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01479

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01477 and MPMX20_01478 are separated by 52 nucleotidesMPMX20_01478 and MPMX20_01479 are separated by 67 nucleotidesMPMX20_01479 and MPMX20_01480 are separated by 7 nucleotidesMPMX20_01480 and MPMX20_01481 are separated by 168 nucleotides MPMX20_01477: MPMX20_01477 - D-alanyl-D-alanine carboxypeptidase DacC, at 1,548,078 to 1,549,283 _01477 MPMX20_01478: MPMX20_01478 - Deoxyribose operon repressor, at 1,549,336 to 1,550,094 _01478 MPMX20_01479: MPMX20_01479 - Putative undecaprenyl-diphosphatase YbjG, at 1,550,162 to 1,550,770 _01479 MPMX20_01480: MPMX20_01480 - hypothetical protein, at 1,550,778 to 1,551,506 _01480 MPMX20_01481: MPMX20_01481 - Multidrug transporter MdfA, at 1,551,675 to 1,552,907 _01481 Position (kb) 1550 1551Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 1549.206 kb on - strandat 1549.206 kb on - strandat 1549.315 kb on + strandat 1549.323 kb on - strandat 1549.380 kb on - strandat 1549.380 kb on - strandat 1549.476 kb on - strand, within MPMX20_01478at 1549.482 kb on + strand, within MPMX20_01478at 1549.489 kb on + strand, within MPMX20_01478at 1549.513 kb on + strand, within MPMX20_01478at 1549.513 kb on + strand, within MPMX20_01478at 1549.513 kb on + strand, within MPMX20_01478at 1549.520 kb on + strand, within MPMX20_01478at 1549.573 kb on - strand, within MPMX20_01478at 1549.635 kb on + strand, within MPMX20_01478at 1549.775 kb on + strand, within MPMX20_01478at 1549.942 kb on - strand, within MPMX20_01478at 1549.974 kb on - strand, within MPMX20_01478at 1550.054 kb on + strandat 1550.171 kb on + strandat 1550.179 kb on - strandat 1550.214 kb on + strandat 1550.239 kb on - strand, within MPMX20_01479at 1550.244 kb on - strand, within MPMX20_01479at 1550.273 kb on + strand, within MPMX20_01479at 1550.378 kb on + strand, within MPMX20_01479at 1550.395 kb on + strand, within MPMX20_01479at 1550.409 kb on + strand, within MPMX20_01479at 1550.426 kb on + strand, within MPMX20_01479at 1550.486 kb on + strand, within MPMX20_01479at 1550.486 kb on + strand, within MPMX20_01479at 1550.486 kb on + strand, within MPMX20_01479at 1550.486 kb on + strand, within MPMX20_01479at 1550.494 kb on - strand, within MPMX20_01479at 1550.494 kb on - strand, within MPMX20_01479at 1550.539 kb on + strand, within MPMX20_01479at 1550.547 kb on - strand, within MPMX20_01479at 1550.561 kb on + strand, within MPMX20_01479at 1550.565 kb on - strand, within MPMX20_01479at 1550.592 kb on + strand, within MPMX20_01479at 1550.669 kb on - strand, within MPMX20_01479at 1550.727 kb on + strandat 1550.744 kb on - strandat 1550.846 kb on - strandat 1550.848 kb on + strandat 1550.848 kb on + strandat 1550.848 kb on + strandat 1550.855 kb on + strand, within MPMX20_01480at 1550.881 kb on + strand, within MPMX20_01480at 1550.889 kb on - strand, within MPMX20_01480at 1550.889 kb on - strand, within MPMX20_01480at 1550.937 kb on + strand, within MPMX20_01480at 1550.972 kb on - strand, within MPMX20_01480at 1550.976 kb on + strand, within MPMX20_01480at 1550.998 kb on - strand, within MPMX20_01480at 1551.055 kb on + strand, within MPMX20_01480at 1551.063 kb on - strand, within MPMX20_01480at 1551.063 kb on - strand, within MPMX20_01480at 1551.178 kb on + strand, within MPMX20_01480at 1551.178 kb on + strand, within MPMX20_01480at 1551.188 kb on + strand, within MPMX20_01480at 1551.232 kb on - strand, within MPMX20_01480at 1551.252 kb on - strand, within MPMX20_01480at 1551.394 kb on - strand, within MPMX20_01480at 1551.399 kb on - strand, within MPMX20_01480at 1551.426 kb on - strand, within MPMX20_01480at 1551.489 kb on + strandat 1551.535 kb on - strandat 1551.545 kb on - strandat 1551.570 kb on - strandat 1551.589 kb on + strandat 1551.622 kb on + strandat 1551.624 kb on - strandat 1551.630 kb on - strandat 1551.697 kb on + strandat 1551.702 kb on + strandat 1551.702 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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1,549,206 - -1.7
1,549,206 - +0.7
1,549,315 + +1.1
1,549,323 - -0.0
1,549,380 - +1.1
1,549,380 - -0.5
1,549,476 - MPMX20_01478 0.18 -0.7
1,549,482 + MPMX20_01478 0.19 -0.7
1,549,489 + MPMX20_01478 0.20 +0.0
1,549,513 + MPMX20_01478 0.23 +0.2
1,549,513 + MPMX20_01478 0.23 -1.0
1,549,513 + MPMX20_01478 0.23 -1.0
1,549,520 + MPMX20_01478 0.24 -1.7
1,549,573 - MPMX20_01478 0.31 +0.3
1,549,635 + MPMX20_01478 0.39 -1.4
1,549,775 + MPMX20_01478 0.58 -1.7
1,549,942 - MPMX20_01478 0.80 -0.2
1,549,974 - MPMX20_01478 0.84 -2.3
1,550,054 + -1.3
1,550,171 + -0.9
1,550,179 - +0.5
1,550,214 + +0.0
1,550,239 - MPMX20_01479 0.13 +0.1
1,550,244 - MPMX20_01479 0.13 -0.0
1,550,273 + MPMX20_01479 0.18 +8.1
1,550,378 + MPMX20_01479 0.35 -0.8
1,550,395 + MPMX20_01479 0.38 +0.6
1,550,409 + MPMX20_01479 0.41 -0.2
1,550,426 + MPMX20_01479 0.43 +1.8
1,550,486 + MPMX20_01479 0.53 +0.2
1,550,486 + MPMX20_01479 0.53 +0.8
1,550,486 + MPMX20_01479 0.53 +0.1
1,550,486 + MPMX20_01479 0.53 -0.5
1,550,494 - MPMX20_01479 0.55 +0.2
1,550,494 - MPMX20_01479 0.55 -0.1
1,550,539 + MPMX20_01479 0.62 +1.0
1,550,547 - MPMX20_01479 0.63 -1.1
1,550,561 + MPMX20_01479 0.66 -0.3
1,550,565 - MPMX20_01479 0.66 -1.5
1,550,592 + MPMX20_01479 0.71 -0.9
1,550,669 - MPMX20_01479 0.83 -0.1
1,550,727 + -1.8
1,550,744 - +0.1
1,550,846 - -0.4
1,550,848 + +0.1
1,550,848 + -1.2
1,550,848 + -0.6
1,550,855 + MPMX20_01480 0.11 -0.9
1,550,881 + MPMX20_01480 0.14 +3.2
1,550,889 - MPMX20_01480 0.15 +2.5
1,550,889 - MPMX20_01480 0.15 +1.6
1,550,937 + MPMX20_01480 0.22 -1.0
1,550,972 - MPMX20_01480 0.27 +0.0
1,550,976 + MPMX20_01480 0.27 +0.3
1,550,998 - MPMX20_01480 0.30 +0.5
1,551,055 + MPMX20_01480 0.38 -0.7
1,551,063 - MPMX20_01480 0.39 -2.2
1,551,063 - MPMX20_01480 0.39 -0.7
1,551,178 + MPMX20_01480 0.55 +0.0
1,551,178 + MPMX20_01480 0.55 -1.4
1,551,188 + MPMX20_01480 0.56 +0.4
1,551,232 - MPMX20_01480 0.62 +0.2
1,551,252 - MPMX20_01480 0.65 -0.9
1,551,394 - MPMX20_01480 0.84 -0.9
1,551,399 - MPMX20_01480 0.85 +1.2
1,551,426 - MPMX20_01480 0.89 -0.9
1,551,489 + -0.7
1,551,535 - -1.0
1,551,545 - -1.9
1,551,570 - -0.5
1,551,589 + +0.7
1,551,622 + -1.6
1,551,624 - -1.3
1,551,630 - -0.3
1,551,697 + +0.4
1,551,702 + -3.1
1,551,702 + +3.2

Or see this region's nucleotide sequence