Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01477 and MPMX20_01478 are separated by 52 nucleotides MPMX20_01478 and MPMX20_01479 are separated by 67 nucleotides MPMX20_01479 and MPMX20_01480 are separated by 7 nucleotides MPMX20_01480 and MPMX20_01481 are separated by 168 nucleotides
MPMX20_01477: MPMX20_01477 - D-alanyl-D-alanine carboxypeptidase DacC, at 1,548,078 to 1,549,283
_01477
MPMX20_01478: MPMX20_01478 - Deoxyribose operon repressor, at 1,549,336 to 1,550,094
_01478
MPMX20_01479: MPMX20_01479 - Putative undecaprenyl-diphosphatase YbjG, at 1,550,162 to 1,550,770
_01479
MPMX20_01480: MPMX20_01480 - hypothetical protein, at 1,550,778 to 1,551,506
_01480
MPMX20_01481: MPMX20_01481 - Multidrug transporter MdfA, at 1,551,675 to 1,552,907
_01481
Position (kb)
1550
1551 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 1549.206 kb on - strand at 1549.206 kb on - strand at 1549.315 kb on + strand at 1549.323 kb on - strand at 1549.380 kb on - strand at 1549.380 kb on - strand at 1549.476 kb on - strand, within MPMX20_01478 at 1549.482 kb on + strand, within MPMX20_01478 at 1549.489 kb on + strand, within MPMX20_01478 at 1549.513 kb on + strand, within MPMX20_01478 at 1549.513 kb on + strand, within MPMX20_01478 at 1549.513 kb on + strand, within MPMX20_01478 at 1549.520 kb on + strand, within MPMX20_01478 at 1549.573 kb on - strand, within MPMX20_01478 at 1549.635 kb on + strand, within MPMX20_01478 at 1549.775 kb on + strand, within MPMX20_01478 at 1549.942 kb on - strand, within MPMX20_01478 at 1549.974 kb on - strand, within MPMX20_01478 at 1550.054 kb on + strand at 1550.171 kb on + strand at 1550.179 kb on - strand at 1550.214 kb on + strand at 1550.239 kb on - strand, within MPMX20_01479 at 1550.244 kb on - strand, within MPMX20_01479 at 1550.273 kb on + strand, within MPMX20_01479 at 1550.378 kb on + strand, within MPMX20_01479 at 1550.395 kb on + strand, within MPMX20_01479 at 1550.409 kb on + strand, within MPMX20_01479 at 1550.426 kb on + strand, within MPMX20_01479 at 1550.486 kb on + strand, within MPMX20_01479 at 1550.486 kb on + strand, within MPMX20_01479 at 1550.486 kb on + strand, within MPMX20_01479 at 1550.486 kb on + strand, within MPMX20_01479 at 1550.494 kb on - strand, within MPMX20_01479 at 1550.494 kb on - strand, within MPMX20_01479 at 1550.539 kb on + strand, within MPMX20_01479 at 1550.547 kb on - strand, within MPMX20_01479 at 1550.561 kb on + strand, within MPMX20_01479 at 1550.565 kb on - strand, within MPMX20_01479 at 1550.592 kb on + strand, within MPMX20_01479 at 1550.669 kb on - strand, within MPMX20_01479 at 1550.727 kb on + strand at 1550.744 kb on - strand at 1550.846 kb on - strand at 1550.848 kb on + strand at 1550.848 kb on + strand at 1550.848 kb on + strand at 1550.855 kb on + strand, within MPMX20_01480 at 1550.881 kb on + strand, within MPMX20_01480 at 1550.889 kb on - strand, within MPMX20_01480 at 1550.889 kb on - strand, within MPMX20_01480 at 1550.937 kb on + strand, within MPMX20_01480 at 1550.972 kb on - strand, within MPMX20_01480 at 1550.976 kb on + strand, within MPMX20_01480 at 1550.998 kb on - strand, within MPMX20_01480 at 1551.055 kb on + strand, within MPMX20_01480 at 1551.063 kb on - strand, within MPMX20_01480 at 1551.063 kb on - strand, within MPMX20_01480 at 1551.178 kb on + strand, within MPMX20_01480 at 1551.178 kb on + strand, within MPMX20_01480 at 1551.188 kb on + strand, within MPMX20_01480 at 1551.232 kb on - strand, within MPMX20_01480 at 1551.252 kb on - strand, within MPMX20_01480 at 1551.394 kb on - strand, within MPMX20_01480 at 1551.399 kb on - strand, within MPMX20_01480 at 1551.426 kb on - strand, within MPMX20_01480 at 1551.489 kb on + strand at 1551.535 kb on - strand at 1551.545 kb on - strand at 1551.570 kb on - strand at 1551.589 kb on + strand at 1551.622 kb on + strand at 1551.624 kb on - strand at 1551.630 kb on - strand at 1551.697 kb on + strand at 1551.702 kb on + strand at 1551.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 1,549,206 - -1.7 1,549,206 - +0.7 1,549,315 + +1.1 1,549,323 - -0.0 1,549,380 - +1.1 1,549,380 - -0.5 1,549,476 - MPMX20_01478 0.18 -0.7 1,549,482 + MPMX20_01478 0.19 -0.7 1,549,489 + MPMX20_01478 0.20 +0.0 1,549,513 + MPMX20_01478 0.23 +0.2 1,549,513 + MPMX20_01478 0.23 -1.0 1,549,513 + MPMX20_01478 0.23 -1.0 1,549,520 + MPMX20_01478 0.24 -1.7 1,549,573 - MPMX20_01478 0.31 +0.3 1,549,635 + MPMX20_01478 0.39 -1.4 1,549,775 + MPMX20_01478 0.58 -1.7 1,549,942 - MPMX20_01478 0.80 -0.2 1,549,974 - MPMX20_01478 0.84 -2.3 1,550,054 + -1.3 1,550,171 + -0.9 1,550,179 - +0.5 1,550,214 + +0.0 1,550,239 - MPMX20_01479 0.13 +0.1 1,550,244 - MPMX20_01479 0.13 -0.0 1,550,273 + MPMX20_01479 0.18 +8.1 1,550,378 + MPMX20_01479 0.35 -0.8 1,550,395 + MPMX20_01479 0.38 +0.6 1,550,409 + MPMX20_01479 0.41 -0.2 1,550,426 + MPMX20_01479 0.43 +1.8 1,550,486 + MPMX20_01479 0.53 +0.2 1,550,486 + MPMX20_01479 0.53 +0.8 1,550,486 + MPMX20_01479 0.53 +0.1 1,550,486 + MPMX20_01479 0.53 -0.5 1,550,494 - MPMX20_01479 0.55 +0.2 1,550,494 - MPMX20_01479 0.55 -0.1 1,550,539 + MPMX20_01479 0.62 +1.0 1,550,547 - MPMX20_01479 0.63 -1.1 1,550,561 + MPMX20_01479 0.66 -0.3 1,550,565 - MPMX20_01479 0.66 -1.5 1,550,592 + MPMX20_01479 0.71 -0.9 1,550,669 - MPMX20_01479 0.83 -0.1 1,550,727 + -1.8 1,550,744 - +0.1 1,550,846 - -0.4 1,550,848 + +0.1 1,550,848 + -1.2 1,550,848 + -0.6 1,550,855 + MPMX20_01480 0.11 -0.9 1,550,881 + MPMX20_01480 0.14 +3.2 1,550,889 - MPMX20_01480 0.15 +2.5 1,550,889 - MPMX20_01480 0.15 +1.6 1,550,937 + MPMX20_01480 0.22 -1.0 1,550,972 - MPMX20_01480 0.27 +0.0 1,550,976 + MPMX20_01480 0.27 +0.3 1,550,998 - MPMX20_01480 0.30 +0.5 1,551,055 + MPMX20_01480 0.38 -0.7 1,551,063 - MPMX20_01480 0.39 -2.2 1,551,063 - MPMX20_01480 0.39 -0.7 1,551,178 + MPMX20_01480 0.55 +0.0 1,551,178 + MPMX20_01480 0.55 -1.4 1,551,188 + MPMX20_01480 0.56 +0.4 1,551,232 - MPMX20_01480 0.62 +0.2 1,551,252 - MPMX20_01480 0.65 -0.9 1,551,394 - MPMX20_01480 0.84 -0.9 1,551,399 - MPMX20_01480 0.85 +1.2 1,551,426 - MPMX20_01480 0.89 -0.9 1,551,489 + -0.7 1,551,535 - -1.0 1,551,545 - -1.9 1,551,570 - -0.5 1,551,589 + +0.7 1,551,622 + -1.6 1,551,624 - -1.3 1,551,630 - -0.3 1,551,697 + +0.4 1,551,702 + -3.1 1,551,702 + +3.2
Or see this region's nucleotide sequence