Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01425 and MPMX20_01426 are separated by 96 nucleotides MPMX20_01426 and MPMX20_01427 overlap by 14 nucleotides MPMX20_01427 and MPMX20_01428 are separated by 5 nucleotides
MPMX20_01425: MPMX20_01425 - ATP-dependent RNA helicase RhlE, at 1,487,938 to 1,489,323
_01425
MPMX20_01426: MPMX20_01426 - ATP-dependent DNA helicase DinG, at 1,489,420 to 1,491,597
_01426
MPMX20_01427: MPMX20_01427 - Protein FimG, at 1,491,584 to 1,492,087
_01427
MPMX20_01428: MPMX20_01428 - hypothetical protein, at 1,492,093 to 1,493,082
_01428
Position (kb)
1489
1490
1491
1492 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1488.431 kb on + strand, within MPMX20_01425 at 1488.492 kb on + strand, within MPMX20_01425 at 1488.584 kb on + strand, within MPMX20_01425 at 1488.632 kb on + strand, within MPMX20_01425 at 1488.661 kb on - strand, within MPMX20_01425 at 1488.695 kb on + strand, within MPMX20_01425 at 1488.799 kb on - strand, within MPMX20_01425 at 1488.838 kb on - strand, within MPMX20_01425 at 1488.893 kb on + strand, within MPMX20_01425 at 1488.981 kb on + strand, within MPMX20_01425 at 1489.003 kb on + strand, within MPMX20_01425 at 1489.134 kb on + strand, within MPMX20_01425 at 1489.159 kb on - strand, within MPMX20_01425 at 1489.221 kb on + strand at 1489.229 kb on - strand at 1489.229 kb on - strand at 1489.229 kb on - strand at 1489.274 kb on + strand at 1489.274 kb on + strand at 1489.422 kb on + strand at 1489.430 kb on - strand at 1489.452 kb on - strand at 1489.474 kb on + strand at 1489.675 kb on - strand, within MPMX20_01426 at 1489.675 kb on - strand, within MPMX20_01426 at 1489.738 kb on - strand, within MPMX20_01426 at 1489.774 kb on - strand, within MPMX20_01426 at 1489.881 kb on - strand, within MPMX20_01426 at 1489.882 kb on - strand, within MPMX20_01426 at 1489.893 kb on + strand, within MPMX20_01426 at 1489.901 kb on - strand, within MPMX20_01426 at 1489.963 kb on + strand, within MPMX20_01426 at 1489.985 kb on - strand, within MPMX20_01426 at 1490.082 kb on + strand, within MPMX20_01426 at 1490.097 kb on + strand, within MPMX20_01426 at 1490.097 kb on + strand, within MPMX20_01426 at 1490.097 kb on + strand, within MPMX20_01426 at 1490.097 kb on + strand, within MPMX20_01426 at 1490.097 kb on + strand, within MPMX20_01426 at 1490.097 kb on + strand, within MPMX20_01426 at 1490.097 kb on + strand, within MPMX20_01426 at 1490.105 kb on - strand, within MPMX20_01426 at 1490.105 kb on - strand, within MPMX20_01426 at 1490.105 kb on - strand, within MPMX20_01426 at 1490.105 kb on - strand, within MPMX20_01426 at 1490.105 kb on - strand, within MPMX20_01426 at 1490.115 kb on + strand, within MPMX20_01426 at 1490.182 kb on + strand, within MPMX20_01426 at 1490.276 kb on + strand, within MPMX20_01426 at 1490.276 kb on + strand, within MPMX20_01426 at 1490.284 kb on - strand, within MPMX20_01426 at 1490.328 kb on + strand, within MPMX20_01426 at 1490.347 kb on + strand, within MPMX20_01426 at 1490.350 kb on + strand, within MPMX20_01426 at 1490.381 kb on - strand, within MPMX20_01426 at 1490.424 kb on - strand, within MPMX20_01426 at 1490.483 kb on - strand, within MPMX20_01426 at 1490.593 kb on + strand, within MPMX20_01426 at 1490.785 kb on + strand, within MPMX20_01426 at 1490.900 kb on + strand, within MPMX20_01426 at 1490.908 kb on - strand, within MPMX20_01426 at 1490.908 kb on - strand, within MPMX20_01426 at 1490.936 kb on + strand, within MPMX20_01426 at 1490.970 kb on - strand, within MPMX20_01426 at 1491.001 kb on + strand, within MPMX20_01426 at 1491.009 kb on - strand, within MPMX20_01426 at 1491.115 kb on + strand, within MPMX20_01426 at 1491.147 kb on + strand, within MPMX20_01426 at 1491.191 kb on - strand, within MPMX20_01426 at 1491.337 kb on + strand, within MPMX20_01426 at 1491.407 kb on + strand at 1491.552 kb on + strand at 1491.625 kb on - strand at 1491.681 kb on + strand, within MPMX20_01427 at 1491.709 kb on + strand, within MPMX20_01427 at 1491.718 kb on - strand, within MPMX20_01427 at 1491.773 kb on + strand, within MPMX20_01427 at 1491.783 kb on - strand, within MPMX20_01427 at 1491.883 kb on + strand, within MPMX20_01427 at 1491.948 kb on + strand, within MPMX20_01427 at 1491.984 kb on + strand, within MPMX20_01427 at 1492.039 kb on + strand at 1492.105 kb on - strand at 1492.132 kb on - strand at 1492.134 kb on + strand at 1492.142 kb on - strand at 1492.142 kb on - strand at 1492.151 kb on + strand at 1492.151 kb on + strand at 1492.151 kb on + strand at 1492.151 kb on + strand at 1492.169 kb on - strand at 1492.356 kb on + strand, within MPMX20_01428 at 1492.356 kb on + strand, within MPMX20_01428 at 1492.356 kb on + strand, within MPMX20_01428 at 1492.356 kb on + strand, within MPMX20_01428 at 1492.363 kb on - strand, within MPMX20_01428 at 1492.364 kb on - strand, within MPMX20_01428 at 1492.364 kb on - strand, within MPMX20_01428 at 1492.364 kb on - strand, within MPMX20_01428 at 1492.375 kb on - strand, within MPMX20_01428 at 1492.415 kb on + strand, within MPMX20_01428 at 1492.415 kb on + strand, within MPMX20_01428 at 1492.423 kb on - strand, within MPMX20_01428 at 1492.428 kb on - strand, within MPMX20_01428 at 1492.436 kb on - strand, within MPMX20_01428 at 1492.491 kb on + strand, within MPMX20_01428 at 1492.491 kb on + strand, within MPMX20_01428 at 1492.491 kb on + strand, within MPMX20_01428 at 1492.499 kb on - strand, within MPMX20_01428 at 1492.499 kb on - strand, within MPMX20_01428 at 1492.499 kb on - strand, within MPMX20_01428 at 1492.559 kb on + strand, within MPMX20_01428 at 1492.586 kb on + strand, within MPMX20_01428
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 1,488,431 + MPMX20_01425 0.36 -1.2 1,488,492 + MPMX20_01425 0.40 -1.4 1,488,584 + MPMX20_01425 0.47 +0.4 1,488,632 + MPMX20_01425 0.50 -0.1 1,488,661 - MPMX20_01425 0.52 +1.8 1,488,695 + MPMX20_01425 0.55 +0.3 1,488,799 - MPMX20_01425 0.62 +0.8 1,488,838 - MPMX20_01425 0.65 +0.6 1,488,893 + MPMX20_01425 0.69 +0.3 1,488,981 + MPMX20_01425 0.75 -1.2 1,489,003 + MPMX20_01425 0.77 -0.7 1,489,134 + MPMX20_01425 0.86 -0.4 1,489,159 - MPMX20_01425 0.88 -0.7 1,489,221 + +0.2 1,489,229 - +0.2 1,489,229 - -0.2 1,489,229 - +0.5 1,489,274 + -0.2 1,489,274 + +1.1 1,489,422 + -0.4 1,489,430 - -1.1 1,489,452 - -0.3 1,489,474 + -0.6 1,489,675 - MPMX20_01426 0.12 -1.5 1,489,675 - MPMX20_01426 0.12 +3.5 1,489,738 - MPMX20_01426 0.15 +1.3 1,489,774 - MPMX20_01426 0.16 +1.0 1,489,881 - MPMX20_01426 0.21 +0.6 1,489,882 - MPMX20_01426 0.21 +1.5 1,489,893 + MPMX20_01426 0.22 +0.2 1,489,901 - MPMX20_01426 0.22 +0.2 1,489,963 + MPMX20_01426 0.25 +1.0 1,489,985 - MPMX20_01426 0.26 -0.6 1,490,082 + MPMX20_01426 0.30 -0.2 1,490,097 + MPMX20_01426 0.31 -2.7 1,490,097 + MPMX20_01426 0.31 -0.2 1,490,097 + MPMX20_01426 0.31 +2.6 1,490,097 + MPMX20_01426 0.31 +0.9 1,490,097 + MPMX20_01426 0.31 +0.0 1,490,097 + MPMX20_01426 0.31 -1.5 1,490,097 + MPMX20_01426 0.31 +2.9 1,490,105 - MPMX20_01426 0.31 -0.7 1,490,105 - MPMX20_01426 0.31 +0.9 1,490,105 - MPMX20_01426 0.31 +1.0 1,490,105 - MPMX20_01426 0.31 -2.5 1,490,105 - MPMX20_01426 0.31 -1.8 1,490,115 + MPMX20_01426 0.32 -0.0 1,490,182 + MPMX20_01426 0.35 +0.1 1,490,276 + MPMX20_01426 0.39 -1.1 1,490,276 + MPMX20_01426 0.39 +0.7 1,490,284 - MPMX20_01426 0.40 -1.4 1,490,328 + MPMX20_01426 0.42 -0.3 1,490,347 + MPMX20_01426 0.43 -1.2 1,490,350 + MPMX20_01426 0.43 -0.6 1,490,381 - MPMX20_01426 0.44 +0.1 1,490,424 - MPMX20_01426 0.46 +1.2 1,490,483 - MPMX20_01426 0.49 -0.3 1,490,593 + MPMX20_01426 0.54 +1.0 1,490,785 + MPMX20_01426 0.63 +0.8 1,490,900 + MPMX20_01426 0.68 -0.1 1,490,908 - MPMX20_01426 0.68 +1.0 1,490,908 - MPMX20_01426 0.68 +1.6 1,490,936 + MPMX20_01426 0.70 -1.0 1,490,970 - MPMX20_01426 0.71 +0.8 1,491,001 + MPMX20_01426 0.73 +0.7 1,491,009 - MPMX20_01426 0.73 +1.2 1,491,115 + MPMX20_01426 0.78 -0.2 1,491,147 + MPMX20_01426 0.79 +0.6 1,491,191 - MPMX20_01426 0.81 +0.5 1,491,337 + MPMX20_01426 0.88 +2.0 1,491,407 + +3.3 1,491,552 + -2.2 1,491,625 - +0.2 1,491,681 + MPMX20_01427 0.19 -1.1 1,491,709 + MPMX20_01427 0.25 -0.4 1,491,718 - MPMX20_01427 0.27 -0.9 1,491,773 + MPMX20_01427 0.38 +0.5 1,491,783 - MPMX20_01427 0.39 -0.6 1,491,883 + MPMX20_01427 0.59 -0.9 1,491,948 + MPMX20_01427 0.72 +0.1 1,491,984 + MPMX20_01427 0.79 -0.6 1,492,039 + -0.1 1,492,105 - +0.0 1,492,132 - +0.2 1,492,134 + +0.3 1,492,142 - -0.3 1,492,142 - -0.9 1,492,151 + +0.3 1,492,151 + +0.6 1,492,151 + -0.9 1,492,151 + -1.3 1,492,169 - -2.4 1,492,356 + MPMX20_01428 0.27 -1.5 1,492,356 + MPMX20_01428 0.27 -0.2 1,492,356 + MPMX20_01428 0.27 -0.5 1,492,356 + MPMX20_01428 0.27 +1.0 1,492,363 - MPMX20_01428 0.27 +3.3 1,492,364 - MPMX20_01428 0.27 +1.6 1,492,364 - MPMX20_01428 0.27 -0.7 1,492,364 - MPMX20_01428 0.27 -0.9 1,492,375 - MPMX20_01428 0.28 +0.4 1,492,415 + MPMX20_01428 0.33 -0.2 1,492,415 + MPMX20_01428 0.33 -1.4 1,492,423 - MPMX20_01428 0.33 -1.3 1,492,428 - MPMX20_01428 0.34 +1.4 1,492,436 - MPMX20_01428 0.35 -2.6 1,492,491 + MPMX20_01428 0.40 -2.2 1,492,491 + MPMX20_01428 0.40 -1.4 1,492,491 + MPMX20_01428 0.40 +0.4 1,492,499 - MPMX20_01428 0.41 +0.0 1,492,499 - MPMX20_01428 0.41 -0.2 1,492,499 - MPMX20_01428 0.41 -1.0 1,492,559 + MPMX20_01428 0.47 -0.5 1,492,586 + MPMX20_01428 0.50 -0.5
Or see this region's nucleotide sequence