Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00882

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00880 and MPMX20_00881 are separated by 106 nucleotidesMPMX20_00881 and MPMX20_00882 are separated by 40 nucleotidesMPMX20_00882 and MPMX20_00883 overlap by 8 nucleotides MPMX20_00880: MPMX20_00880 - Outer membrane lipoprotein RcsF, at 930,138 to 930,542 _00880 MPMX20_00881: MPMX20_00881 - D-methionine-binding lipoprotein MetQ, at 930,649 to 931,464 _00881 MPMX20_00882: MPMX20_00882 - D-methionine transport system permease protein MetI, at 931,505 to 932,158 _00882 MPMX20_00883: MPMX20_00883 - Methionine import ATP-binding protein MetN, at 932,151 to 933,182 _00883 Position (kb) 931 932 933Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 930.589 kb on - strandat 930.614 kb on - strandat 930.619 kb on - strandat 930.630 kb on + strandat 930.638 kb on - strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.655 kb on + strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.663 kb on - strandat 930.721 kb on - strandat 930.837 kb on - strand, within MPMX20_00881at 930.868 kb on + strand, within MPMX20_00881at 930.889 kb on + strand, within MPMX20_00881at 930.906 kb on + strand, within MPMX20_00881at 930.906 kb on + strand, within MPMX20_00881at 930.978 kb on + strand, within MPMX20_00881at 931.005 kb on + strand, within MPMX20_00881at 931.013 kb on - strand, within MPMX20_00881at 931.035 kb on + strand, within MPMX20_00881at 931.068 kb on + strand, within MPMX20_00881at 931.076 kb on - strand, within MPMX20_00881at 931.117 kb on + strand, within MPMX20_00881at 931.117 kb on + strand, within MPMX20_00881at 931.138 kb on + strand, within MPMX20_00881at 931.139 kb on + strand, within MPMX20_00881at 931.139 kb on + strand, within MPMX20_00881at 931.139 kb on + strand, within MPMX20_00881at 931.147 kb on - strand, within MPMX20_00881at 931.147 kb on - strand, within MPMX20_00881at 931.158 kb on + strand, within MPMX20_00881at 931.166 kb on - strand, within MPMX20_00881at 931.191 kb on + strand, within MPMX20_00881at 931.199 kb on - strand, within MPMX20_00881at 931.204 kb on - strand, within MPMX20_00881at 931.229 kb on + strand, within MPMX20_00881at 931.230 kb on - strand, within MPMX20_00881at 931.297 kb on + strand, within MPMX20_00881at 931.338 kb on + strand, within MPMX20_00881at 931.350 kb on + strand, within MPMX20_00881at 931.369 kb on - strand, within MPMX20_00881at 931.397 kb on + strandat 931.415 kb on - strandat 931.434 kb on + strandat 931.465 kb on + strandat 931.473 kb on - strandat 931.473 kb on - strandat 931.493 kb on - strandat 931.497 kb on + strandat 931.520 kb on + strandat 931.521 kb on + strandat 931.539 kb on + strandat 931.557 kb on - strandat 931.562 kb on - strandat 931.595 kb on - strand, within MPMX20_00882at 931.617 kb on + strand, within MPMX20_00882at 931.647 kb on - strand, within MPMX20_00882at 931.648 kb on - strand, within MPMX20_00882at 931.665 kb on - strand, within MPMX20_00882at 931.670 kb on - strand, within MPMX20_00882at 931.680 kb on - strand, within MPMX20_00882at 931.699 kb on + strand, within MPMX20_00882at 931.699 kb on + strand, within MPMX20_00882at 931.699 kb on + strand, within MPMX20_00882at 931.707 kb on - strand, within MPMX20_00882at 931.730 kb on - strand, within MPMX20_00882at 931.734 kb on + strand, within MPMX20_00882at 931.742 kb on - strand, within MPMX20_00882at 931.799 kb on + strand, within MPMX20_00882at 931.861 kb on + strand, within MPMX20_00882at 931.904 kb on - strand, within MPMX20_00882at 931.960 kb on + strand, within MPMX20_00882at 931.968 kb on - strand, within MPMX20_00882at 931.968 kb on - strand, within MPMX20_00882at 931.968 kb on - strand, within MPMX20_00882at 931.974 kb on + strand, within MPMX20_00882at 931.982 kb on - strand, within MPMX20_00882at 931.982 kb on - strand, within MPMX20_00882at 931.984 kb on + strand, within MPMX20_00882at 931.992 kb on - strand, within MPMX20_00882at 932.001 kb on - strand, within MPMX20_00882at 932.003 kb on - strand, within MPMX20_00882at 932.006 kb on - strand, within MPMX20_00882at 932.021 kb on + strand, within MPMX20_00882at 932.048 kb on - strand, within MPMX20_00882at 932.155 kb on + strandat 932.181 kb on - strandat 932.259 kb on + strand, within MPMX20_00883at 932.267 kb on - strand, within MPMX20_00883at 932.280 kb on - strand, within MPMX20_00883at 932.309 kb on + strand, within MPMX20_00883at 932.309 kb on + strand, within MPMX20_00883at 932.317 kb on - strand, within MPMX20_00883at 932.326 kb on + strand, within MPMX20_00883at 932.326 kb on + strand, within MPMX20_00883at 932.352 kb on + strand, within MPMX20_00883at 932.367 kb on + strand, within MPMX20_00883at 932.376 kb on - strand, within MPMX20_00883at 932.399 kb on - strand, within MPMX20_00883at 932.449 kb on + strand, within MPMX20_00883at 932.458 kb on - strand, within MPMX20_00883at 932.493 kb on + strand, within MPMX20_00883at 932.590 kb on + strand, within MPMX20_00883at 932.604 kb on + strand, within MPMX20_00883at 932.622 kb on + strand, within MPMX20_00883at 932.622 kb on + strand, within MPMX20_00883at 932.637 kb on - strand, within MPMX20_00883at 932.798 kb on - strand, within MPMX20_00883at 932.811 kb on - strand, within MPMX20_00883at 932.880 kb on + strand, within MPMX20_00883at 932.888 kb on + strand, within MPMX20_00883at 932.906 kb on + strand, within MPMX20_00883at 932.914 kb on - strand, within MPMX20_00883at 932.952 kb on - strand, within MPMX20_00883at 932.986 kb on - strand, within MPMX20_00883at 932.988 kb on + strand, within MPMX20_00883at 932.993 kb on + strand, within MPMX20_00883at 933.003 kb on + strand, within MPMX20_00883at 933.003 kb on + strand, within MPMX20_00883at 933.003 kb on + strand, within MPMX20_00883at 933.003 kb on + strand, within MPMX20_00883at 933.003 kb on + strand, within MPMX20_00883at 933.003 kb on + strand, within MPMX20_00883at 933.010 kb on + strand, within MPMX20_00883at 933.011 kb on - strand, within MPMX20_00883at 933.011 kb on - strand, within MPMX20_00883at 933.011 kb on - strand, within MPMX20_00883at 933.016 kb on - strand, within MPMX20_00883at 933.034 kb on - strand, within MPMX20_00883at 933.034 kb on - strand, within MPMX20_00883at 933.056 kb on - strand, within MPMX20_00883at 933.084 kb on + strandat 933.092 kb on - strandat 933.107 kb on + strandat 933.115 kb on - strandat 933.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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930,589 - +0.1
930,614 - -0.1
930,619 - +1.2
930,630 + -1.3
930,638 - -1.2
930,655 + -1.3
930,655 + -0.8
930,655 + +0.6
930,655 + +1.2
930,655 + -1.7
930,655 + +0.2
930,655 + -2.2
930,663 - +1.5
930,663 - -0.9
930,663 - +0.6
930,663 - -0.8
930,663 - -0.4
930,663 - -1.3
930,663 - +0.1
930,663 - -1.1
930,663 - -0.4
930,663 - -0.5
930,663 - +2.7
930,663 - +0.1
930,721 - +1.3
930,837 - MPMX20_00881 0.23 -1.8
930,868 + MPMX20_00881 0.27 +2.5
930,889 + MPMX20_00881 0.29 -2.4
930,906 + MPMX20_00881 0.31 -0.6
930,906 + MPMX20_00881 0.31 +0.2
930,978 + MPMX20_00881 0.40 -1.2
931,005 + MPMX20_00881 0.44 +2.1
931,013 - MPMX20_00881 0.45 -1.5
931,035 + MPMX20_00881 0.47 -0.6
931,068 + MPMX20_00881 0.51 -1.0
931,076 - MPMX20_00881 0.52 -0.5
931,117 + MPMX20_00881 0.57 +0.3
931,117 + MPMX20_00881 0.57 -0.8
931,138 + MPMX20_00881 0.60 -1.0
931,139 + MPMX20_00881 0.60 -0.9
931,139 + MPMX20_00881 0.60 -1.1
931,139 + MPMX20_00881 0.60 -1.0
931,147 - MPMX20_00881 0.61 +1.1
931,147 - MPMX20_00881 0.61 +0.3
931,158 + MPMX20_00881 0.62 -0.1
931,166 - MPMX20_00881 0.63 -0.8
931,191 + MPMX20_00881 0.66 +2.5
931,199 - MPMX20_00881 0.67 -0.1
931,204 - MPMX20_00881 0.68 +0.8
931,229 + MPMX20_00881 0.71 +0.0
931,230 - MPMX20_00881 0.71 -0.3
931,297 + MPMX20_00881 0.79 -0.1
931,338 + MPMX20_00881 0.84 +2.5
931,350 + MPMX20_00881 0.86 -1.4
931,369 - MPMX20_00881 0.88 +2.5
931,397 + +0.9
931,415 - +1.5
931,434 + -0.1
931,465 + +0.9
931,473 - +0.1
931,473 - -0.8
931,493 - -1.5
931,497 + +0.3
931,520 + -0.5
931,521 + -0.6
931,539 + +0.9
931,557 - +0.8
931,562 - -1.6
931,595 - MPMX20_00882 0.14 +1.4
931,617 + MPMX20_00882 0.17 -1.3
931,647 - MPMX20_00882 0.22 -1.7
931,648 - MPMX20_00882 0.22 +0.3
931,665 - MPMX20_00882 0.24 +1.9
931,670 - MPMX20_00882 0.25 +0.6
931,680 - MPMX20_00882 0.27 +0.2
931,699 + MPMX20_00882 0.30 +2.2
931,699 + MPMX20_00882 0.30 -0.2
931,699 + MPMX20_00882 0.30 +0.6
931,707 - MPMX20_00882 0.31 -0.2
931,730 - MPMX20_00882 0.34 +0.3
931,734 + MPMX20_00882 0.35 +0.2
931,742 - MPMX20_00882 0.36 +1.4
931,799 + MPMX20_00882 0.45 +1.5
931,861 + MPMX20_00882 0.54 +1.6
931,904 - MPMX20_00882 0.61 -0.7
931,960 + MPMX20_00882 0.70 +0.5
931,968 - MPMX20_00882 0.71 -1.7
931,968 - MPMX20_00882 0.71 -0.7
931,968 - MPMX20_00882 0.71 -0.8
931,974 + MPMX20_00882 0.72 +9.3
931,982 - MPMX20_00882 0.73 -0.1
931,982 - MPMX20_00882 0.73 -1.0
931,984 + MPMX20_00882 0.73 -1.5
931,992 - MPMX20_00882 0.74 +1.3
932,001 - MPMX20_00882 0.76 +0.3
932,003 - MPMX20_00882 0.76 -0.7
932,006 - MPMX20_00882 0.77 -1.1
932,021 + MPMX20_00882 0.79 -0.6
932,048 - MPMX20_00882 0.83 -1.6
932,155 + -0.3
932,181 - +0.5
932,259 + MPMX20_00883 0.10 +0.5
932,267 - MPMX20_00883 0.11 +1.9
932,280 - MPMX20_00883 0.12 -0.0
932,309 + MPMX20_00883 0.15 +0.2
932,309 + MPMX20_00883 0.15 -0.1
932,317 - MPMX20_00883 0.16 +3.1
932,326 + MPMX20_00883 0.17 +0.2
932,326 + MPMX20_00883 0.17 +0.0
932,352 + MPMX20_00883 0.19 -0.2
932,367 + MPMX20_00883 0.21 +1.9
932,376 - MPMX20_00883 0.22 -2.1
932,399 - MPMX20_00883 0.24 +1.5
932,449 + MPMX20_00883 0.29 +1.5
932,458 - MPMX20_00883 0.30 -0.9
932,493 + MPMX20_00883 0.33 +1.7
932,590 + MPMX20_00883 0.43 -0.2
932,604 + MPMX20_00883 0.44 -1.1
932,622 + MPMX20_00883 0.46 -0.5
932,622 + MPMX20_00883 0.46 -0.7
932,637 - MPMX20_00883 0.47 +1.3
932,798 - MPMX20_00883 0.63 -0.7
932,811 - MPMX20_00883 0.64 +1.1
932,880 + MPMX20_00883 0.71 -1.5
932,888 + MPMX20_00883 0.71 -0.9
932,906 + MPMX20_00883 0.73 +0.9
932,914 - MPMX20_00883 0.74 -1.0
932,952 - MPMX20_00883 0.78 +1.5
932,986 - MPMX20_00883 0.81 +1.5
932,988 + MPMX20_00883 0.81 +1.2
932,993 + MPMX20_00883 0.82 +0.5
933,003 + MPMX20_00883 0.83 -0.9
933,003 + MPMX20_00883 0.83 -1.5
933,003 + MPMX20_00883 0.83 -1.3
933,003 + MPMX20_00883 0.83 -1.7
933,003 + MPMX20_00883 0.83 -0.6
933,003 + MPMX20_00883 0.83 -0.7
933,010 + MPMX20_00883 0.83 +0.3
933,011 - MPMX20_00883 0.83 -1.1
933,011 - MPMX20_00883 0.83 -2.1
933,011 - MPMX20_00883 0.83 -0.8
933,016 - MPMX20_00883 0.84 -0.7
933,034 - MPMX20_00883 0.86 -1.3
933,034 - MPMX20_00883 0.86 -0.5
933,056 - MPMX20_00883 0.88 -0.9
933,084 + -0.7
933,092 - +0.2
933,107 + +0.3
933,115 - -1.1
933,115 - -0.1

Or see this region's nucleotide sequence