Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00841

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00840 and MPMX20_00841 are separated by 177 nucleotidesMPMX20_00841 and MPMX20_00842 are separated by 85 nucleotidesMPMX20_00842 and MPMX20_00843 are separated by 56 nucleotides MPMX20_00840: MPMX20_00840 - Glutamate-1-semialdehyde 2,1-aminomutase, at 886,439 to 887,719 _00840 MPMX20_00841: MPMX20_00841 - H(+)/Cl(-) exchange transporter ClcA, at 887,897 to 889,297 _00841 MPMX20_00842: MPMX20_00842 - Iron-sulfur cluster insertion protein ErpA, at 889,383 to 889,727 _00842 MPMX20_00843: MPMX20_00843 - hypothetical protein, at 889,784 to 890,407 _00843 Position (kb) 887 888 889 890Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 887.759 kb on + strandat 887.759 kb on + strandat 887.759 kb on + strandat 887.759 kb on + strandat 887.766 kb on - strandat 887.767 kb on - strandat 887.767 kb on - strandat 887.767 kb on - strandat 887.840 kb on + strandat 887.848 kb on - strandat 887.848 kb on - strandat 887.848 kb on - strandat 887.914 kb on + strandat 887.914 kb on + strandat 887.914 kb on + strandat 887.914 kb on + strandat 887.922 kb on - strandat 887.922 kb on - strandat 887.922 kb on - strandat 887.922 kb on - strandat 887.922 kb on - strandat 887.932 kb on + strandat 887.932 kb on + strandat 887.932 kb on + strandat 887.940 kb on - strandat 887.940 kb on - strandat 887.940 kb on - strandat 887.950 kb on - strandat 887.950 kb on - strandat 888.029 kb on + strandat 888.040 kb on + strand, within MPMX20_00841at 888.128 kb on + strand, within MPMX20_00841at 888.128 kb on + strand, within MPMX20_00841at 888.133 kb on + strand, within MPMX20_00841at 888.134 kb on + strand, within MPMX20_00841at 888.134 kb on + strand, within MPMX20_00841at 888.134 kb on - strand, within MPMX20_00841at 888.134 kb on - strand, within MPMX20_00841at 888.134 kb on - strand, within MPMX20_00841at 888.140 kb on + strand, within MPMX20_00841at 888.155 kb on + strand, within MPMX20_00841at 888.221 kb on - strand, within MPMX20_00841at 888.258 kb on - strand, within MPMX20_00841at 888.315 kb on + strand, within MPMX20_00841at 888.315 kb on + strand, within MPMX20_00841at 888.334 kb on - strand, within MPMX20_00841at 888.334 kb on - strand, within MPMX20_00841at 888.334 kb on - strand, within MPMX20_00841at 888.343 kb on - strand, within MPMX20_00841at 888.405 kb on + strand, within MPMX20_00841at 888.495 kb on + strand, within MPMX20_00841at 888.528 kb on + strand, within MPMX20_00841at 888.528 kb on + strand, within MPMX20_00841at 888.528 kb on + strand, within MPMX20_00841at 888.700 kb on + strand, within MPMX20_00841at 888.708 kb on + strand, within MPMX20_00841at 888.716 kb on - strand, within MPMX20_00841at 888.778 kb on - strand, within MPMX20_00841at 888.793 kb on - strand, within MPMX20_00841at 888.795 kb on - strand, within MPMX20_00841at 888.813 kb on + strand, within MPMX20_00841at 888.853 kb on + strand, within MPMX20_00841at 888.892 kb on + strand, within MPMX20_00841at 888.903 kb on + strand, within MPMX20_00841at 888.937 kb on - strand, within MPMX20_00841at 888.950 kb on - strand, within MPMX20_00841at 888.985 kb on + strand, within MPMX20_00841at 888.985 kb on + strand, within MPMX20_00841at 888.995 kb on - strand, within MPMX20_00841at 888.999 kb on - strand, within MPMX20_00841at 889.015 kb on + strand, within MPMX20_00841at 889.225 kb on + strandat 889.291 kb on - strandat 889.366 kb on + strandat 889.366 kb on + strandat 889.374 kb on - strandat 889.754 kb on + strandat 889.762 kb on - strandat 889.856 kb on - strand, within MPMX20_00843at 889.860 kb on - strand, within MPMX20_00843at 889.907 kb on + strand, within MPMX20_00843at 889.915 kb on - strand, within MPMX20_00843at 890.004 kb on - strand, within MPMX20_00843at 890.046 kb on - strand, within MPMX20_00843at 890.196 kb on - strand, within MPMX20_00843at 890.297 kb on - strand, within MPMX20_00843

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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887,759 + +0.9
887,759 + +0.1
887,759 + +0.9
887,759 + +0.8
887,766 - -1.2
887,767 - +0.5
887,767 - +0.5
887,767 - +1.6
887,840 + -2.4
887,848 - -2.2
887,848 - +1.5
887,848 - -2.5
887,914 + +1.1
887,914 + -0.7
887,914 + -0.7
887,914 + -1.6
887,922 - +0.9
887,922 - -1.4
887,922 - +0.8
887,922 - +0.5
887,922 - -0.5
887,932 + +0.1
887,932 + -1.2
887,932 + -0.6
887,940 - +1.5
887,940 - -0.7
887,940 - -1.0
887,950 - -0.8
887,950 - -0.2
888,029 + +0.9
888,040 + MPMX20_00841 0.10 -0.6
888,128 + MPMX20_00841 0.16 -0.4
888,128 + MPMX20_00841 0.16 +1.7
888,133 + MPMX20_00841 0.17 +2.2
888,134 + MPMX20_00841 0.17 +0.0
888,134 + MPMX20_00841 0.17 +0.5
888,134 - MPMX20_00841 0.17 +0.9
888,134 - MPMX20_00841 0.17 -0.3
888,134 - MPMX20_00841 0.17 -0.1
888,140 + MPMX20_00841 0.17 -0.3
888,155 + MPMX20_00841 0.18 -1.5
888,221 - MPMX20_00841 0.23 -1.3
888,258 - MPMX20_00841 0.26 +0.9
888,315 + MPMX20_00841 0.30 -0.0
888,315 + MPMX20_00841 0.30 -0.1
888,334 - MPMX20_00841 0.31 +0.7
888,334 - MPMX20_00841 0.31 -0.9
888,334 - MPMX20_00841 0.31 +1.9
888,343 - MPMX20_00841 0.32 -0.6
888,405 + MPMX20_00841 0.36 -2.5
888,495 + MPMX20_00841 0.43 -1.2
888,528 + MPMX20_00841 0.45 +3.2
888,528 + MPMX20_00841 0.45 -0.4
888,528 + MPMX20_00841 0.45 +1.0
888,700 + MPMX20_00841 0.57 +2.5
888,708 + MPMX20_00841 0.58 +0.1
888,716 - MPMX20_00841 0.58 -1.1
888,778 - MPMX20_00841 0.63 +0.6
888,793 - MPMX20_00841 0.64 -1.0
888,795 - MPMX20_00841 0.64 +2.5
888,813 + MPMX20_00841 0.65 -0.9
888,853 + MPMX20_00841 0.68 +1.4
888,892 + MPMX20_00841 0.71 -0.2
888,903 + MPMX20_00841 0.72 +0.6
888,937 - MPMX20_00841 0.74 +0.0
888,950 - MPMX20_00841 0.75 -0.4
888,985 + MPMX20_00841 0.78 +0.5
888,985 + MPMX20_00841 0.78 +6.2
888,995 - MPMX20_00841 0.78 -0.7
888,999 - MPMX20_00841 0.79 -0.7
889,015 + MPMX20_00841 0.80 +2.5
889,225 + +0.7
889,291 - +2.4
889,366 + +1.3
889,366 + -1.5
889,374 - -1.0
889,754 + +0.6
889,762 - -0.1
889,856 - MPMX20_00843 0.12 +1.1
889,860 - MPMX20_00843 0.12 +0.1
889,907 + MPMX20_00843 0.20 -0.0
889,915 - MPMX20_00843 0.21 -1.0
890,004 - MPMX20_00843 0.35 +1.0
890,046 - MPMX20_00843 0.42 -0.5
890,196 - MPMX20_00843 0.66 -0.3
890,297 - MPMX20_00843 0.82 -0.6

Or see this region's nucleotide sequence