Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00559

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00557 and MPMX20_00558 are separated by 46 nucleotidesMPMX20_00558 and MPMX20_00559 are separated by 30 nucleotidesMPMX20_00559 and MPMX20_00560 are separated by 104 nucleotidesMPMX20_00560 and MPMX20_00561 are separated by 198 nucleotides MPMX20_00557: MPMX20_00557 - Regulator of ribonuclease activity B, at 582,756 to 583,181 _00557 MPMX20_00558: MPMX20_00558 - hypothetical protein, at 583,228 to 583,986 _00558 MPMX20_00559: MPMX20_00559 - hypothetical protein, at 584,017 to 584,745 _00559 MPMX20_00560: MPMX20_00560 - tRNA-Leu, at 584,850 to 584,934 _00560 MPMX20_00561: MPMX20_00561 - Prophage integrase IntA, at 585,133 to 586,392 _00561 Position (kb) 584 585Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 583.020 kb on - strand, within MPMX20_00557at 583.104 kb on + strand, within MPMX20_00557at 583.104 kb on + strand, within MPMX20_00557at 583.112 kb on + strand, within MPMX20_00557at 583.263 kb on - strandat 583.297 kb on + strandat 583.305 kb on - strand, within MPMX20_00558at 583.305 kb on - strand, within MPMX20_00558at 583.356 kb on + strand, within MPMX20_00558at 583.364 kb on - strand, within MPMX20_00558at 583.365 kb on - strand, within MPMX20_00558at 583.437 kb on + strand, within MPMX20_00558at 583.444 kb on - strand, within MPMX20_00558at 583.461 kb on - strand, within MPMX20_00558at 583.565 kb on + strand, within MPMX20_00558at 583.578 kb on - strand, within MPMX20_00558at 583.609 kb on - strand, within MPMX20_00558at 583.616 kb on + strand, within MPMX20_00558at 583.655 kb on + strand, within MPMX20_00558at 583.668 kb on + strand, within MPMX20_00558at 583.705 kb on - strand, within MPMX20_00558at 583.714 kb on + strand, within MPMX20_00558at 583.728 kb on + strand, within MPMX20_00558at 583.856 kb on + strand, within MPMX20_00558at 583.856 kb on + strand, within MPMX20_00558at 583.856 kb on + strand, within MPMX20_00558at 583.862 kb on + strand, within MPMX20_00558at 583.864 kb on - strand, within MPMX20_00558at 583.873 kb on + strand, within MPMX20_00558at 583.939 kb on - strandat 584.044 kb on - strandat 584.045 kb on + strandat 584.053 kb on + strandat 584.053 kb on + strandat 584.108 kb on + strand, within MPMX20_00559at 584.108 kb on + strand, within MPMX20_00559at 584.108 kb on + strand, within MPMX20_00559at 584.108 kb on + strand, within MPMX20_00559at 584.116 kb on - strand, within MPMX20_00559at 584.116 kb on - strand, within MPMX20_00559at 584.116 kb on - strand, within MPMX20_00559at 584.116 kb on - strand, within MPMX20_00559at 584.121 kb on + strand, within MPMX20_00559at 584.129 kb on - strand, within MPMX20_00559at 584.141 kb on - strand, within MPMX20_00559at 584.175 kb on - strand, within MPMX20_00559at 584.177 kb on - strand, within MPMX20_00559at 584.195 kb on + strand, within MPMX20_00559at 584.205 kb on + strand, within MPMX20_00559at 584.327 kb on + strand, within MPMX20_00559at 584.333 kb on - strand, within MPMX20_00559at 584.339 kb on + strand, within MPMX20_00559at 584.344 kb on + strand, within MPMX20_00559at 584.347 kb on - strand, within MPMX20_00559at 584.399 kb on + strand, within MPMX20_00559at 584.401 kb on - strand, within MPMX20_00559at 584.454 kb on - strand, within MPMX20_00559at 584.479 kb on + strand, within MPMX20_00559at 584.522 kb on + strand, within MPMX20_00559at 584.598 kb on + strand, within MPMX20_00559at 584.606 kb on - strand, within MPMX20_00559at 584.656 kb on - strand, within MPMX20_00559at 584.659 kb on + strand, within MPMX20_00559at 584.667 kb on - strand, within MPMX20_00559at 584.670 kb on - strand, within MPMX20_00559at 584.777 kb on + strandat 584.777 kb on + strandat 584.805 kb on + strandat 584.816 kb on + strandat 584.823 kb on - strandat 584.843 kb on + strandat 584.848 kb on + strandat 585.027 kb on - strandat 585.027 kb on - strandat 585.129 kb on + strandat 585.137 kb on - strandat 585.176 kb on - strandat 585.190 kb on - strandat 585.223 kb on + strandat 585.225 kb on + strandat 585.227 kb on - strandat 585.232 kb on - strandat 585.324 kb on - strand, within MPMX20_00561at 585.331 kb on - strand, within MPMX20_00561at 585.332 kb on + strand, within MPMX20_00561at 585.352 kb on - strand, within MPMX20_00561at 585.352 kb on - strand, within MPMX20_00561at 585.357 kb on + strand, within MPMX20_00561at 585.357 kb on + strand, within MPMX20_00561at 585.365 kb on - strand, within MPMX20_00561at 585.381 kb on + strand, within MPMX20_00561at 585.401 kb on - strand, within MPMX20_00561at 585.403 kb on + strand, within MPMX20_00561at 585.403 kb on + strand, within MPMX20_00561at 585.411 kb on - strand, within MPMX20_00561at 585.425 kb on + strand, within MPMX20_00561at 585.425 kb on + strand, within MPMX20_00561at 585.425 kb on + strand, within MPMX20_00561at 585.425 kb on + strand, within MPMX20_00561at 585.425 kb on + strand, within MPMX20_00561at 585.425 kb on + strand, within MPMX20_00561at 585.433 kb on - strand, within MPMX20_00561at 585.433 kb on - strand, within MPMX20_00561at 585.465 kb on + strand, within MPMX20_00561at 585.470 kb on + strand, within MPMX20_00561at 585.470 kb on + strand, within MPMX20_00561at 585.470 kb on + strand, within MPMX20_00561at 585.470 kb on + strand, within MPMX20_00561at 585.480 kb on + strand, within MPMX20_00561at 585.480 kb on + strand, within MPMX20_00561at 585.485 kb on + strand, within MPMX20_00561at 585.493 kb on + strand, within MPMX20_00561at 585.493 kb on - strand, within MPMX20_00561at 585.561 kb on - strand, within MPMX20_00561at 585.564 kb on + strand, within MPMX20_00561at 585.587 kb on - strand, within MPMX20_00561at 585.605 kb on + strand, within MPMX20_00561at 585.605 kb on + strand, within MPMX20_00561at 585.605 kb on + strand, within MPMX20_00561at 585.606 kb on + strand, within MPMX20_00561at 585.613 kb on - strand, within MPMX20_00561at 585.613 kb on - strand, within MPMX20_00561at 585.613 kb on - strand, within MPMX20_00561at 585.613 kb on - strand, within MPMX20_00561at 585.614 kb on - strand, within MPMX20_00561at 585.614 kb on - strand, within MPMX20_00561at 585.661 kb on + strand, within MPMX20_00561at 585.661 kb on + strand, within MPMX20_00561at 585.669 kb on - strand, within MPMX20_00561at 585.669 kb on - strand, within MPMX20_00561at 585.671 kb on + strand, within MPMX20_00561at 585.686 kb on + strand, within MPMX20_00561at 585.711 kb on + strand, within MPMX20_00561at 585.722 kb on - strand, within MPMX20_00561at 585.732 kb on + strand, within MPMX20_00561at 585.742 kb on + strand, within MPMX20_00561at 585.742 kb on + strand, within MPMX20_00561at 585.742 kb on + strand, within MPMX20_00561

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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583,020 - MPMX20_00557 0.62 +0.4
583,104 + MPMX20_00557 0.82 -0.6
583,104 + MPMX20_00557 0.82 -0.4
583,112 + MPMX20_00557 0.84 +0.7
583,263 - +0.0
583,297 + +0.3
583,305 - MPMX20_00558 0.10 +0.1
583,305 - MPMX20_00558 0.10 -0.4
583,356 + MPMX20_00558 0.17 -0.4
583,364 - MPMX20_00558 0.18 -0.5
583,365 - MPMX20_00558 0.18 -0.4
583,437 + MPMX20_00558 0.28 -0.2
583,444 - MPMX20_00558 0.28 +2.1
583,461 - MPMX20_00558 0.31 +0.4
583,565 + MPMX20_00558 0.44 -0.7
583,578 - MPMX20_00558 0.46 -0.2
583,609 - MPMX20_00558 0.50 -2.0
583,616 + MPMX20_00558 0.51 -0.5
583,655 + MPMX20_00558 0.56 -1.5
583,668 + MPMX20_00558 0.58 -0.2
583,705 - MPMX20_00558 0.63 -0.2
583,714 + MPMX20_00558 0.64 +0.0
583,728 + MPMX20_00558 0.66 -0.6
583,856 + MPMX20_00558 0.83 -1.3
583,856 + MPMX20_00558 0.83 -1.2
583,856 + MPMX20_00558 0.83 +0.1
583,862 + MPMX20_00558 0.84 -0.7
583,864 - MPMX20_00558 0.84 +0.8
583,873 + MPMX20_00558 0.85 -1.5
583,939 - -1.0
584,044 - +0.8
584,045 + +0.8
584,053 + +1.7
584,053 + +0.8
584,108 + MPMX20_00559 0.12 +2.0
584,108 + MPMX20_00559 0.12 +0.1
584,108 + MPMX20_00559 0.12 +0.1
584,108 + MPMX20_00559 0.12 -0.2
584,116 - MPMX20_00559 0.14 -1.8
584,116 - MPMX20_00559 0.14 +0.4
584,116 - MPMX20_00559 0.14 +1.1
584,116 - MPMX20_00559 0.14 +0.4
584,121 + MPMX20_00559 0.14 -0.9
584,129 - MPMX20_00559 0.15 -0.4
584,141 - MPMX20_00559 0.17 -0.2
584,175 - MPMX20_00559 0.22 +0.1
584,177 - MPMX20_00559 0.22 +2.6
584,195 + MPMX20_00559 0.24 +2.4
584,205 + MPMX20_00559 0.26 +1.0
584,327 + MPMX20_00559 0.43 -0.6
584,333 - MPMX20_00559 0.43 -2.1
584,339 + MPMX20_00559 0.44 -0.6
584,344 + MPMX20_00559 0.45 +0.6
584,347 - MPMX20_00559 0.45 +1.8
584,399 + MPMX20_00559 0.52 -1.1
584,401 - MPMX20_00559 0.53 -0.2
584,454 - MPMX20_00559 0.60 -0.5
584,479 + MPMX20_00559 0.63 +0.4
584,522 + MPMX20_00559 0.69 +2.2
584,598 + MPMX20_00559 0.80 +1.4
584,606 - MPMX20_00559 0.81 -2.6
584,656 - MPMX20_00559 0.88 -1.5
584,659 + MPMX20_00559 0.88 -0.1
584,667 - MPMX20_00559 0.89 -0.6
584,670 - MPMX20_00559 0.90 +5.4
584,777 + -2.7
584,777 + +1.3
584,805 + -0.8
584,816 + -2.8
584,823 - +0.8
584,843 + -1.3
584,848 + -0.5
585,027 - -0.4
585,027 - -2.1
585,129 + +1.7
585,137 - +4.0
585,176 - +1.4
585,190 - -1.7
585,223 + -0.2
585,225 + +0.5
585,227 - -0.9
585,232 - +0.6
585,324 - MPMX20_00561 0.15 -1.9
585,331 - MPMX20_00561 0.16 -1.3
585,332 + MPMX20_00561 0.16 -1.3
585,352 - MPMX20_00561 0.17 -1.2
585,352 - MPMX20_00561 0.17 -1.0
585,357 + MPMX20_00561 0.18 +1.0
585,357 + MPMX20_00561 0.18 -1.0
585,365 - MPMX20_00561 0.18 -0.2
585,381 + MPMX20_00561 0.20 -0.8
585,401 - MPMX20_00561 0.21 -0.7
585,403 + MPMX20_00561 0.21 +0.1
585,403 + MPMX20_00561 0.21 +0.2
585,411 - MPMX20_00561 0.22 -1.6
585,425 + MPMX20_00561 0.23 +0.6
585,425 + MPMX20_00561 0.23 +1.2
585,425 + MPMX20_00561 0.23 +0.8
585,425 + MPMX20_00561 0.23 +2.0
585,425 + MPMX20_00561 0.23 +2.1
585,425 + MPMX20_00561 0.23 +2.9
585,433 - MPMX20_00561 0.24 +0.8
585,433 - MPMX20_00561 0.24 -1.7
585,465 + MPMX20_00561 0.26 +1.3
585,470 + MPMX20_00561 0.27 -0.4
585,470 + MPMX20_00561 0.27 -0.3
585,470 + MPMX20_00561 0.27 +0.4
585,470 + MPMX20_00561 0.27 -0.3
585,480 + MPMX20_00561 0.28 +0.4
585,480 + MPMX20_00561 0.28 +0.9
585,485 + MPMX20_00561 0.28 +3.4
585,493 + MPMX20_00561 0.29 +0.3
585,493 - MPMX20_00561 0.29 -2.4
585,561 - MPMX20_00561 0.34 -1.7
585,564 + MPMX20_00561 0.34 +0.2
585,587 - MPMX20_00561 0.36 +2.4
585,605 + MPMX20_00561 0.37 +0.1
585,605 + MPMX20_00561 0.37 -1.2
585,605 + MPMX20_00561 0.37 +0.6
585,606 + MPMX20_00561 0.38 +0.7
585,613 - MPMX20_00561 0.38 -1.8
585,613 - MPMX20_00561 0.38 +0.2
585,613 - MPMX20_00561 0.38 -1.0
585,613 - MPMX20_00561 0.38 +1.4
585,614 - MPMX20_00561 0.38 -0.7
585,614 - MPMX20_00561 0.38 +0.6
585,661 + MPMX20_00561 0.42 -0.6
585,661 + MPMX20_00561 0.42 -0.9
585,669 - MPMX20_00561 0.43 +0.3
585,669 - MPMX20_00561 0.43 +2.4
585,671 + MPMX20_00561 0.43 +1.4
585,686 + MPMX20_00561 0.44 +1.4
585,711 + MPMX20_00561 0.46 -1.1
585,722 - MPMX20_00561 0.47 -1.2
585,732 + MPMX20_00561 0.48 +3.4
585,742 + MPMX20_00561 0.48 +1.0
585,742 + MPMX20_00561 0.48 +0.3
585,742 + MPMX20_00561 0.48 -0.7

Or see this region's nucleotide sequence