Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00385

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00383 and MPMX20_00384 are separated by 56 nucleotidesMPMX20_00384 and MPMX20_00385 are separated by 14 nucleotidesMPMX20_00385 and MPMX20_00386 are separated by 20 nucleotidesMPMX20_00386 and MPMX20_00387 are separated by 11 nucleotidesMPMX20_00387 and MPMX20_00388 are separated by 53 nucleotidesMPMX20_00388 and MPMX20_00389 are separated by 87 nucleotidesMPMX20_00389 and MPMX20_00390 are separated by 40 nucleotides MPMX20_00383: MPMX20_00383 - Transcriptional regulatory protein PhoP, at 404,020 to 404,751 _00383 MPMX20_00384: MPMX20_00384 - Major phosphate-irrepressible acid phosphatase, at 404,808 to 405,662 _00384 MPMX20_00385: MPMX20_00385 - hypothetical protein, at 405,677 to 406,540 _00385 MPMX20_00386: MPMX20_00386 - hypothetical protein, at 406,561 to 406,692 _00386 MPMX20_00387: MPMX20_00387 - hypothetical protein, at 406,704 to 406,814 _00387 MPMX20_00388: MPMX20_00388 - hypothetical protein, at 406,868 to 406,966 _00388 MPMX20_00389: MPMX20_00389 - hypothetical protein, at 407,054 to 407,440 _00389 MPMX20_00390: MPMX20_00390 - hypothetical protein, at 407,481 to 407,897 _00390 Position (kb) 405 406 407Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 404.709 kb on - strandat 404.744 kb on - strandat 404.755 kb on + strandat 404.786 kb on + strandat 404.802 kb on - strandat 404.836 kb on + strandat 404.874 kb on + strandat 404.887 kb on - strandat 404.894 kb on + strand, within MPMX20_00384at 404.902 kb on - strand, within MPMX20_00384at 404.955 kb on - strand, within MPMX20_00384at 404.999 kb on + strand, within MPMX20_00384at 405.030 kb on + strand, within MPMX20_00384at 405.114 kb on + strand, within MPMX20_00384at 405.114 kb on + strand, within MPMX20_00384at 405.119 kb on + strand, within MPMX20_00384at 405.122 kb on - strand, within MPMX20_00384at 405.122 kb on - strand, within MPMX20_00384at 405.184 kb on + strand, within MPMX20_00384at 405.191 kb on + strand, within MPMX20_00384at 405.191 kb on + strand, within MPMX20_00384at 405.199 kb on - strand, within MPMX20_00384at 405.199 kb on - strand, within MPMX20_00384at 405.207 kb on - strand, within MPMX20_00384at 405.207 kb on - strand, within MPMX20_00384at 405.211 kb on - strand, within MPMX20_00384at 405.255 kb on + strand, within MPMX20_00384at 405.268 kb on - strand, within MPMX20_00384at 405.305 kb on + strand, within MPMX20_00384at 405.366 kb on + strand, within MPMX20_00384at 405.370 kb on + strand, within MPMX20_00384at 405.373 kb on - strand, within MPMX20_00384at 405.447 kb on - strand, within MPMX20_00384at 405.452 kb on - strand, within MPMX20_00384at 405.469 kb on + strand, within MPMX20_00384at 405.564 kb on + strand, within MPMX20_00384at 405.607 kb on + strandat 405.609 kb on - strandat 405.609 kb on - strandat 405.612 kb on + strandat 405.612 kb on + strandat 405.612 kb on + strandat 405.620 kb on - strandat 405.620 kb on - strandat 405.620 kb on - strandat 405.620 kb on - strandat 405.620 kb on - strandat 405.642 kb on - strandat 405.652 kb on - strandat 405.652 kb on - strandat 405.654 kb on - strandat 405.656 kb on + strandat 405.656 kb on + strandat 405.659 kb on - strandat 405.663 kb on + strandat 405.667 kb on + strandat 405.697 kb on + strandat 405.712 kb on - strandat 405.718 kb on + strandat 405.735 kb on + strandat 405.736 kb on - strandat 405.736 kb on - strandat 405.743 kb on - strandat 405.769 kb on + strand, within MPMX20_00385at 405.861 kb on + strand, within MPMX20_00385at 405.899 kb on - strand, within MPMX20_00385at 405.918 kb on + strand, within MPMX20_00385at 405.923 kb on + strand, within MPMX20_00385at 405.940 kb on - strand, within MPMX20_00385at 405.987 kb on + strand, within MPMX20_00385at 406.019 kb on + strand, within MPMX20_00385at 406.055 kb on + strand, within MPMX20_00385at 406.125 kb on + strand, within MPMX20_00385at 406.155 kb on + strand, within MPMX20_00385at 406.155 kb on + strand, within MPMX20_00385at 406.181 kb on - strand, within MPMX20_00385at 406.203 kb on - strand, within MPMX20_00385at 406.222 kb on - strand, within MPMX20_00385at 406.224 kb on + strand, within MPMX20_00385at 406.236 kb on + strand, within MPMX20_00385at 406.327 kb on + strand, within MPMX20_00385at 406.365 kb on + strand, within MPMX20_00385at 406.373 kb on - strand, within MPMX20_00385at 406.375 kb on + strand, within MPMX20_00385at 406.375 kb on + strand, within MPMX20_00385at 406.378 kb on - strand, within MPMX20_00385at 406.487 kb on + strandat 406.487 kb on + strandat 406.487 kb on + strandat 406.495 kb on - strandat 406.519 kb on + strandat 406.534 kb on + strandat 406.534 kb on + strandat 406.534 kb on + strandat 406.556 kb on + strandat 406.564 kb on - strandat 406.573 kb on - strandat 406.601 kb on - strand, within MPMX20_00386at 406.668 kb on + strand, within MPMX20_00386at 406.668 kb on + strand, within MPMX20_00386at 406.676 kb on - strand, within MPMX20_00386at 406.676 kb on - strand, within MPMX20_00386at 406.715 kb on + strand, within MPMX20_00387at 406.772 kb on - strand, within MPMX20_00387at 406.772 kb on - strand, within MPMX20_00387at 406.772 kb on - strand, within MPMX20_00387at 406.774 kb on + strand, within MPMX20_00387at 406.774 kb on + strand, within MPMX20_00387at 406.777 kb on - strand, within MPMX20_00387at 406.782 kb on - strand, within MPMX20_00387at 406.827 kb on + strandat 406.872 kb on + strandat 406.893 kb on + strand, within MPMX20_00388at 406.966 kb on + strandat 406.976 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.984 kb on - strandat 406.989 kb on - strandat 407.052 kb on - strandat 407.067 kb on + strandat 407.074 kb on + strandat 407.082 kb on - strandat 407.140 kb on + strand, within MPMX20_00389at 407.142 kb on - strand, within MPMX20_00389at 407.226 kb on - strand, within MPMX20_00389at 407.247 kb on + strand, within MPMX20_00389at 407.305 kb on + strand, within MPMX20_00389at 407.305 kb on + strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.402 kb on - strandat 407.418 kb on - strandat 407.433 kb on - strandat 407.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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404,709 - -1.0
404,744 - -0.2
404,755 + +0.3
404,786 + -1.1
404,802 - -0.2
404,836 + +0.8
404,874 + -1.2
404,887 - +0.6
404,894 + MPMX20_00384 0.10 -0.1
404,902 - MPMX20_00384 0.11 -1.4
404,955 - MPMX20_00384 0.17 -1.9
404,999 + MPMX20_00384 0.22 -0.4
405,030 + MPMX20_00384 0.26 -0.6
405,114 + MPMX20_00384 0.36 +0.4
405,114 + MPMX20_00384 0.36 -0.9
405,119 + MPMX20_00384 0.36 +0.4
405,122 - MPMX20_00384 0.37 -2.0
405,122 - MPMX20_00384 0.37 -2.7
405,184 + MPMX20_00384 0.44 +2.4
405,191 + MPMX20_00384 0.45 +0.1
405,191 + MPMX20_00384 0.45 -1.5
405,199 - MPMX20_00384 0.46 -0.2
405,199 - MPMX20_00384 0.46 -3.2
405,207 - MPMX20_00384 0.47 -1.7
405,207 - MPMX20_00384 0.47 -1.8
405,211 - MPMX20_00384 0.47 +0.1
405,255 + MPMX20_00384 0.52 +0.6
405,268 - MPMX20_00384 0.54 -1.1
405,305 + MPMX20_00384 0.58 -0.8
405,366 + MPMX20_00384 0.65 +3.1
405,370 + MPMX20_00384 0.66 -1.6
405,373 - MPMX20_00384 0.66 -0.8
405,447 - MPMX20_00384 0.75 -2.5
405,452 - MPMX20_00384 0.75 -2.6
405,469 + MPMX20_00384 0.77 -0.1
405,564 + MPMX20_00384 0.88 +0.4
405,607 + +0.8
405,609 - +0.8
405,609 - -0.3
405,612 + +1.3
405,612 + -0.2
405,612 + +2.0
405,620 - +0.0
405,620 - +0.1
405,620 - -0.9
405,620 - -0.0
405,620 - +1.4
405,642 - +0.1
405,652 - -3.2
405,652 - -0.7
405,654 - -2.1
405,656 + -2.2
405,656 + +1.0
405,659 - -1.5
405,663 + +2.4
405,667 + +0.3
405,697 + -0.6
405,712 - +1.4
405,718 + -1.0
405,735 + -1.8
405,736 - -1.4
405,736 - +0.4
405,743 - -1.8
405,769 + MPMX20_00385 0.11 +0.7
405,861 + MPMX20_00385 0.21 -0.2
405,899 - MPMX20_00385 0.26 +0.3
405,918 + MPMX20_00385 0.28 +0.1
405,923 + MPMX20_00385 0.28 -1.8
405,940 - MPMX20_00385 0.30 +2.1
405,987 + MPMX20_00385 0.36 -0.2
406,019 + MPMX20_00385 0.40 +2.5
406,055 + MPMX20_00385 0.44 +2.3
406,125 + MPMX20_00385 0.52 -1.6
406,155 + MPMX20_00385 0.55 -0.5
406,155 + MPMX20_00385 0.55 +3.4
406,181 - MPMX20_00385 0.58 -2.5
406,203 - MPMX20_00385 0.61 -1.1
406,222 - MPMX20_00385 0.63 -0.7
406,224 + MPMX20_00385 0.63 +1.4
406,236 + MPMX20_00385 0.65 +0.4
406,327 + MPMX20_00385 0.75 +0.2
406,365 + MPMX20_00385 0.80 +2.4
406,373 - MPMX20_00385 0.81 +4.0
406,375 + MPMX20_00385 0.81 -0.1
406,375 + MPMX20_00385 0.81 -0.7
406,378 - MPMX20_00385 0.81 +2.4
406,487 + +1.6
406,487 + +0.2
406,487 + +0.8
406,495 - +0.2
406,519 + +3.1
406,534 + +0.9
406,534 + -1.2
406,534 + -0.4
406,556 + +1.1
406,564 - +0.6
406,573 - -1.0
406,601 - MPMX20_00386 0.30 -0.2
406,668 + MPMX20_00386 0.81 -0.8
406,668 + MPMX20_00386 0.81 +0.8
406,676 - MPMX20_00386 0.87 -0.8
406,676 - MPMX20_00386 0.87 +0.8
406,715 + MPMX20_00387 0.10 +0.8
406,772 - MPMX20_00387 0.61 +1.5
406,772 - MPMX20_00387 0.61 -0.3
406,772 - MPMX20_00387 0.61 +1.4
406,774 + MPMX20_00387 0.63 +2.7
406,774 + MPMX20_00387 0.63 +0.6
406,777 - MPMX20_00387 0.66 -0.5
406,782 - MPMX20_00387 0.70 -0.9
406,827 + +2.2
406,872 + -0.3
406,893 + MPMX20_00388 0.25 -0.8
406,966 + -0.2
406,976 + -0.7
406,981 + -0.9
406,981 + -0.5
406,981 + +1.5
406,981 + -0.6
406,981 + -0.8
406,984 - -0.5
406,989 - -2.5
407,052 - -2.0
407,067 + +1.1
407,074 + -0.9
407,082 - +2.2
407,140 + MPMX20_00389 0.22 +0.6
407,142 - MPMX20_00389 0.23 -0.5
407,226 - MPMX20_00389 0.44 -1.3
407,247 + MPMX20_00389 0.50 -0.2
407,305 + MPMX20_00389 0.65 +3.2
407,305 + MPMX20_00389 0.65 -2.1
407,313 - MPMX20_00389 0.67 +0.2
407,313 - MPMX20_00389 0.67 -0.8
407,313 - MPMX20_00389 0.67 +0.2
407,402 - +1.0
407,418 - -1.2
407,433 - -0.6
407,472 - -2.5

Or see this region's nucleotide sequence