Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00223

Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00221 and MPMX20_00222 are separated by 44 nucleotidesMPMX20_00222 and MPMX20_00223 are separated by 186 nucleotidesMPMX20_00223 and MPMX20_00224 are separated by 11 nucleotidesMPMX20_00224 and MPMX20_00225 are separated by 43 nucleotides MPMX20_00221: MPMX20_00221 - Endonuclease V, at 230,332 to 231,000 _00221 MPMX20_00222: MPMX20_00222 - hypothetical protein, at 231,045 to 231,635 _00222 MPMX20_00223: MPMX20_00223 - DNA-binding protein HU-alpha, at 231,822 to 232,094 _00223 MPMX20_00224: MPMX20_00224 - hypothetical protein, at 232,106 to 232,798 _00224 MPMX20_00225: MPMX20_00225 - Phosphoribosylamine--glycine ligase, at 232,842 to 234,134 _00225 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 230.882 kb on + strand, within MPMX20_00221at 230.884 kb on + strand, within MPMX20_00221at 230.896 kb on + strand, within MPMX20_00221at 230.896 kb on + strand, within MPMX20_00221at 230.922 kb on - strand, within MPMX20_00221at 230.956 kb on + strandat 231.016 kb on - strandat 231.179 kb on - strand, within MPMX20_00222at 231.305 kb on + strand, within MPMX20_00222at 231.363 kb on + strand, within MPMX20_00222at 231.532 kb on + strand, within MPMX20_00222at 231.532 kb on + strand, within MPMX20_00222at 231.564 kb on - strand, within MPMX20_00222at 231.608 kb on - strandat 231.707 kb on + strandat 231.805 kb on - strandat 231.837 kb on - strandat 231.876 kb on + strand, within MPMX20_00223at 231.877 kb on - strand, within MPMX20_00223at 231.881 kb on + strand, within MPMX20_00223at 231.881 kb on + strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.889 kb on - strand, within MPMX20_00223at 231.943 kb on + strand, within MPMX20_00223at 231.961 kb on - strand, within MPMX20_00223at 231.961 kb on - strand, within MPMX20_00223at 232.183 kb on - strand, within MPMX20_00224at 232.246 kb on + strand, within MPMX20_00224at 232.300 kb on + strand, within MPMX20_00224at 232.329 kb on + strand, within MPMX20_00224at 232.404 kb on + strand, within MPMX20_00224at 232.449 kb on + strand, within MPMX20_00224at 232.457 kb on - strand, within MPMX20_00224at 232.457 kb on - strand, within MPMX20_00224at 232.481 kb on - strand, within MPMX20_00224at 232.540 kb on + strand, within MPMX20_00224at 232.548 kb on - strand, within MPMX20_00224at 232.566 kb on + strand, within MPMX20_00224at 232.574 kb on - strand, within MPMX20_00224at 232.607 kb on + strand, within MPMX20_00224at 232.615 kb on - strand, within MPMX20_00224at 232.622 kb on + strand, within MPMX20_00224at 232.651 kb on - strand, within MPMX20_00224at 232.684 kb on + strand, within MPMX20_00224at 232.692 kb on - strand, within MPMX20_00224at 232.821 kb on + strandat 232.925 kb on + strandat 232.925 kb on + strandat 232.946 kb on - strandat 232.946 kb on - strandat 232.946 kb on - strandat 232.957 kb on + strandat 232.965 kb on - strandat 232.965 kb on - strandat 232.965 kb on - strandat 232.982 kb on + strand, within MPMX20_00225at 232.982 kb on + strand, within MPMX20_00225at 232.982 kb on + strand, within MPMX20_00225at 232.982 kb on + strand, within MPMX20_00225at 232.988 kb on - strand, within MPMX20_00225at 232.988 kb on - strand, within MPMX20_00225at 232.990 kb on - strand, within MPMX20_00225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
remove
230,882 + MPMX20_00221 0.82 +0.1
230,884 + MPMX20_00221 0.83 +1.0
230,896 + MPMX20_00221 0.84 -1.2
230,896 + MPMX20_00221 0.84 -1.7
230,922 - MPMX20_00221 0.88 -1.8
230,956 + +1.1
231,016 - -0.6
231,179 - MPMX20_00222 0.23 +0.6
231,305 + MPMX20_00222 0.44 +1.3
231,363 + MPMX20_00222 0.54 -0.6
231,532 + MPMX20_00222 0.82 +0.8
231,532 + MPMX20_00222 0.82 +2.1
231,564 - MPMX20_00222 0.88 +0.1
231,608 - +1.5
231,707 + +1.5
231,805 - +0.5
231,837 - +1.0
231,876 + MPMX20_00223 0.20 +1.1
231,877 - MPMX20_00223 0.20 +1.9
231,881 + MPMX20_00223 0.22 +1.4
231,881 + MPMX20_00223 0.22 +1.2
231,889 - MPMX20_00223 0.25 -1.2
231,889 - MPMX20_00223 0.25 +0.4
231,889 - MPMX20_00223 0.25 +0.3
231,889 - MPMX20_00223 0.25 +0.5
231,889 - MPMX20_00223 0.25 +0.8
231,943 + MPMX20_00223 0.44 +2.6
231,961 - MPMX20_00223 0.51 +0.2
231,961 - MPMX20_00223 0.51 +3.6
232,183 - MPMX20_00224 0.11 +1.1
232,246 + MPMX20_00224 0.20 -0.4
232,300 + MPMX20_00224 0.28 +3.4
232,329 + MPMX20_00224 0.32 +0.8
232,404 + MPMX20_00224 0.43 +2.4
232,449 + MPMX20_00224 0.49 -0.4
232,457 - MPMX20_00224 0.51 +1.4
232,457 - MPMX20_00224 0.51 -0.5
232,481 - MPMX20_00224 0.54 -1.6
232,540 + MPMX20_00224 0.63 +0.8
232,548 - MPMX20_00224 0.64 +4.0
232,566 + MPMX20_00224 0.66 +0.8
232,574 - MPMX20_00224 0.68 +0.4
232,607 + MPMX20_00224 0.72 -0.9
232,615 - MPMX20_00224 0.73 +0.4
232,622 + MPMX20_00224 0.74 +0.2
232,651 - MPMX20_00224 0.79 +0.2
232,684 + MPMX20_00224 0.83 +0.1
232,692 - MPMX20_00224 0.85 -0.6
232,821 + +0.1
232,925 + -0.4
232,925 + +0.1
232,946 - -2.4
232,946 - -2.0
232,946 - -0.6
232,957 + -1.4
232,965 - -0.4
232,965 - -0.1
232,965 - -0.2
232,982 + MPMX20_00225 0.11 -0.6
232,982 + MPMX20_00225 0.11 -2.1
232,982 + MPMX20_00225 0.11 -0.5
232,982 + MPMX20_00225 0.11 +0.8
232,988 - MPMX20_00225 0.11 -2.6
232,988 - MPMX20_00225 0.11 -2.4
232,990 - MPMX20_00225 0.11 -0.3

Or see this region's nucleotide sequence