Experiment: M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00062 and MPMX20_00063 are separated by 108 nucleotides MPMX20_00063 and MPMX20_00064 are separated by 43 nucleotides
MPMX20_00062: MPMX20_00062 - Multidrug resistance protein 3, at 62,571 to 64,073
_00062
MPMX20_00063: MPMX20_00063 - Lipoprotein 28, at 64,182 to 64,982
_00063
MPMX20_00064: MPMX20_00064 - hypothetical protein, at 65,026 to 66,054
_00064
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 63.186 kb on - strand, within MPMX20_00062 at 63.200 kb on + strand, within MPMX20_00062 at 63.258 kb on + strand, within MPMX20_00062 at 63.260 kb on + strand, within MPMX20_00062 at 63.263 kb on - strand, within MPMX20_00062 at 63.331 kb on - strand, within MPMX20_00062 at 63.391 kb on + strand, within MPMX20_00062 at 63.431 kb on - strand, within MPMX20_00062 at 63.435 kb on - strand, within MPMX20_00062 at 63.435 kb on - strand, within MPMX20_00062 at 63.450 kb on - strand, within MPMX20_00062 at 63.488 kb on - strand, within MPMX20_00062 at 63.499 kb on - strand, within MPMX20_00062 at 63.580 kb on + strand, within MPMX20_00062 at 63.580 kb on + strand, within MPMX20_00062 at 63.588 kb on - strand, within MPMX20_00062 at 63.598 kb on - strand, within MPMX20_00062 at 63.598 kb on - strand, within MPMX20_00062 at 63.671 kb on + strand, within MPMX20_00062 at 63.681 kb on + strand, within MPMX20_00062 at 63.681 kb on + strand, within MPMX20_00062 at 63.682 kb on + strand, within MPMX20_00062 at 63.682 kb on + strand, within MPMX20_00062 at 63.689 kb on - strand, within MPMX20_00062 at 63.690 kb on - strand, within MPMX20_00062 at 63.690 kb on - strand, within MPMX20_00062 at 63.690 kb on - strand, within MPMX20_00062 at 63.715 kb on - strand, within MPMX20_00062 at 63.725 kb on - strand, within MPMX20_00062 at 63.725 kb on - strand, within MPMX20_00062 at 63.728 kb on + strand, within MPMX20_00062 at 63.763 kb on + strand, within MPMX20_00062 at 63.768 kb on + strand, within MPMX20_00062 at 63.809 kb on + strand, within MPMX20_00062 at 63.819 kb on + strand, within MPMX20_00062 at 63.819 kb on + strand, within MPMX20_00062 at 63.827 kb on - strand, within MPMX20_00062 at 63.843 kb on + strand, within MPMX20_00062 at 63.843 kb on + strand, within MPMX20_00062 at 63.851 kb on - strand, within MPMX20_00062 at 63.856 kb on - strand, within MPMX20_00062 at 63.868 kb on + strand, within MPMX20_00062 at 63.868 kb on + strand, within MPMX20_00062 at 63.873 kb on + strand, within MPMX20_00062 at 63.887 kb on + strand, within MPMX20_00062 at 63.887 kb on + strand, within MPMX20_00062 at 63.895 kb on - strand, within MPMX20_00062 at 63.895 kb on - strand, within MPMX20_00062 at 63.898 kb on - strand, within MPMX20_00062 at 63.969 kb on + strand at 63.977 kb on - strand at 63.979 kb on - strand at 63.988 kb on + strand at 63.988 kb on + strand at 63.988 kb on + strand at 63.991 kb on + strand at 63.996 kb on - strand at 63.996 kb on - strand at 64.003 kb on + strand at 64.003 kb on + strand at 64.011 kb on - strand at 64.011 kb on - strand at 64.011 kb on - strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.043 kb on - strand at 64.043 kb on - strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.055 kb on + strand at 64.058 kb on - strand at 64.058 kb on - strand at 64.060 kb on + strand at 64.063 kb on - strand at 64.068 kb on - strand at 64.073 kb on - strand at 64.073 kb on - strand at 64.084 kb on + strand at 64.092 kb on - strand at 64.129 kb on + strand at 64.129 kb on + strand at 64.129 kb on + strand at 64.137 kb on - strand at 64.137 kb on - strand at 64.137 kb on - strand at 64.138 kb on - strand at 64.180 kb on - strand at 64.180 kb on - strand at 64.260 kb on - strand at 64.285 kb on + strand, within MPMX20_00063 at 64.285 kb on + strand, within MPMX20_00063 at 64.285 kb on - strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.298 kb on - strand, within MPMX20_00063 at 64.298 kb on - strand, within MPMX20_00063 at 64.300 kb on - strand, within MPMX20_00063 at 64.359 kb on + strand, within MPMX20_00063 at 64.386 kb on + strand, within MPMX20_00063 at 64.400 kb on + strand, within MPMX20_00063 at 64.400 kb on + strand, within MPMX20_00063 at 64.454 kb on - strand, within MPMX20_00063 at 64.483 kb on - strand, within MPMX20_00063 at 64.547 kb on + strand, within MPMX20_00063 at 64.547 kb on + strand, within MPMX20_00063 at 64.597 kb on + strand, within MPMX20_00063 at 64.641 kb on - strand, within MPMX20_00063 at 64.645 kb on + strand, within MPMX20_00063 at 64.806 kb on + strand, within MPMX20_00063 at 64.814 kb on - strand, within MPMX20_00063 at 64.814 kb on - strand, within MPMX20_00063 at 64.838 kb on - strand, within MPMX20_00063 at 64.853 kb on - strand, within MPMX20_00063 at 64.952 kb on + strand at 64.952 kb on + strand at 64.960 kb on - strand at 64.968 kb on + strand at 64.968 kb on + strand at 64.974 kb on + strand at 64.986 kb on + strand at 64.989 kb on - strand at 64.989 kb on - strand at 64.994 kb on + strand at 64.994 kb on + strand at 64.994 kb on - strand at 64.994 kb on - strand at 65.002 kb on - strand at 65.002 kb on - strand at 65.008 kb on + strand at 65.017 kb on - strand at 65.039 kb on + strand at 65.071 kb on + strand at 65.071 kb on + strand at 65.079 kb on - strand at 65.094 kb on + strand at 65.102 kb on - strand at 65.120 kb on + strand at 65.128 kb on - strand at 65.162 kb on + strand, within MPMX20_00064 at 65.244 kb on + strand, within MPMX20_00064 at 65.275 kb on + strand, within MPMX20_00064 at 65.386 kb on - strand, within MPMX20_00064 at 65.407 kb on + strand, within MPMX20_00064 at 65.426 kb on + strand, within MPMX20_00064 at 65.426 kb on + strand, within MPMX20_00064 at 65.434 kb on - strand, within MPMX20_00064 at 65.479 kb on + strand, within MPMX20_00064 at 65.479 kb on - strand, within MPMX20_00064 at 65.479 kb on - strand, within MPMX20_00064 at 65.479 kb on - strand, within MPMX20_00064 at 65.481 kb on + strand, within MPMX20_00064 at 65.481 kb on + strand, within MPMX20_00064 at 65.489 kb on - strand, within MPMX20_00064 at 65.489 kb on - strand, within MPMX20_00064 at 65.499 kb on + strand, within MPMX20_00064 at 65.500 kb on + strand, within MPMX20_00064 at 65.507 kb on - strand, within MPMX20_00064 at 65.642 kb on + strand, within MPMX20_00064 at 65.665 kb on + strand, within MPMX20_00064 at 65.665 kb on + strand, within MPMX20_00064 at 65.673 kb on - strand, within MPMX20_00064 at 65.673 kb on - strand, within MPMX20_00064 at 65.707 kb on + strand, within MPMX20_00064 at 65.707 kb on + strand, within MPMX20_00064 at 65.707 kb on + strand, within MPMX20_00064 at 65.715 kb on - strand, within MPMX20_00064 at 65.715 kb on - strand, within MPMX20_00064 at 65.715 kb on - strand, within MPMX20_00064 at 65.715 kb on - strand, within MPMX20_00064 at 65.771 kb on - strand, within MPMX20_00064 at 65.773 kb on + strand, within MPMX20_00064 at 65.781 kb on - strand, within MPMX20_00064 at 65.781 kb on - strand, within MPMX20_00064 at 65.880 kb on + strand, within MPMX20_00064 at 65.880 kb on + strand, within MPMX20_00064 at 65.888 kb on - strand, within MPMX20_00064 at 65.936 kb on + strand, within MPMX20_00064 at 65.944 kb on - strand, within MPMX20_00064 at 65.944 kb on - strand, within MPMX20_00064 at 65.944 kb on - strand, within MPMX20_00064 at 65.946 kb on + strand, within MPMX20_00064 at 65.946 kb on + strand, within MPMX20_00064
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 63,186 - MPMX20_00062 0.41 +0.4 63,200 + MPMX20_00062 0.42 -0.8 63,258 + MPMX20_00062 0.46 -1.3 63,260 + MPMX20_00062 0.46 +0.8 63,263 - MPMX20_00062 0.46 +2.5 63,331 - MPMX20_00062 0.51 +0.8 63,391 + MPMX20_00062 0.55 -0.2 63,431 - MPMX20_00062 0.57 -0.4 63,435 - MPMX20_00062 0.57 -0.1 63,435 - MPMX20_00062 0.57 +0.6 63,450 - MPMX20_00062 0.58 -0.0 63,488 - MPMX20_00062 0.61 +0.4 63,499 - MPMX20_00062 0.62 -0.2 63,580 + MPMX20_00062 0.67 +0.1 63,580 + MPMX20_00062 0.67 +0.8 63,588 - MPMX20_00062 0.68 -0.7 63,598 - MPMX20_00062 0.68 -0.3 63,598 - MPMX20_00062 0.68 -1.2 63,671 + MPMX20_00062 0.73 +0.4 63,681 + MPMX20_00062 0.74 -0.4 63,681 + MPMX20_00062 0.74 -0.9 63,682 + MPMX20_00062 0.74 +0.7 63,682 + MPMX20_00062 0.74 -0.1 63,689 - MPMX20_00062 0.74 +1.4 63,690 - MPMX20_00062 0.74 +0.5 63,690 - MPMX20_00062 0.74 -0.9 63,690 - MPMX20_00062 0.74 -1.2 63,715 - MPMX20_00062 0.76 +0.4 63,725 - MPMX20_00062 0.77 +0.4 63,725 - MPMX20_00062 0.77 -1.2 63,728 + MPMX20_00062 0.77 -0.6 63,763 + MPMX20_00062 0.79 -1.0 63,768 + MPMX20_00062 0.80 +0.3 63,809 + MPMX20_00062 0.82 +0.8 63,819 + MPMX20_00062 0.83 -0.1 63,819 + MPMX20_00062 0.83 +1.1 63,827 - MPMX20_00062 0.84 -1.5 63,843 + MPMX20_00062 0.85 +0.1 63,843 + MPMX20_00062 0.85 +0.2 63,851 - MPMX20_00062 0.85 +0.8 63,856 - MPMX20_00062 0.85 -0.5 63,868 + MPMX20_00062 0.86 -0.9 63,868 + MPMX20_00062 0.86 -0.4 63,873 + MPMX20_00062 0.87 -1.9 63,887 + MPMX20_00062 0.88 +0.5 63,887 + MPMX20_00062 0.88 -0.5 63,895 - MPMX20_00062 0.88 -1.0 63,895 - MPMX20_00062 0.88 +0.2 63,898 - MPMX20_00062 0.88 -1.1 63,969 + -0.2 63,977 - -2.1 63,979 - +1.8 63,988 + -0.3 63,988 + +1.4 63,988 + +2.4 63,991 + +0.8 63,996 - +0.1 63,996 - -0.7 64,003 + +2.4 64,003 + -0.7 64,011 - +0.8 64,011 - -0.6 64,011 - +0.1 64,035 + -0.2 64,035 + -1.7 64,035 + +0.1 64,035 + -0.8 64,043 - -0.6 64,043 - +0.3 64,050 + +0.6 64,050 + -0.7 64,055 + -1.7 64,058 - -0.6 64,058 - +1.1 64,060 + +4.9 64,063 - +1.8 64,068 - +0.8 64,073 - +1.4 64,073 - -0.2 64,084 + +1.4 64,092 - -0.6 64,129 + +0.8 64,129 + -0.8 64,129 + +2.2 64,137 - +0.6 64,137 - +1.3 64,137 - +0.6 64,138 - +0.4 64,180 - +1.1 64,180 - -0.5 64,260 - -0.9 64,285 + MPMX20_00063 0.13 -1.8 64,285 + MPMX20_00063 0.13 +0.2 64,285 - MPMX20_00063 0.13 +2.4 64,290 + MPMX20_00063 0.13 +0.1 64,290 + MPMX20_00063 0.13 +0.8 64,290 + MPMX20_00063 0.13 -0.4 64,290 + MPMX20_00063 0.13 +4.2 64,290 + MPMX20_00063 0.13 -1.6 64,290 + MPMX20_00063 0.13 +0.8 64,298 - MPMX20_00063 0.14 +0.2 64,298 - MPMX20_00063 0.14 +1.8 64,300 - MPMX20_00063 0.15 +3.0 64,359 + MPMX20_00063 0.22 -0.4 64,386 + MPMX20_00063 0.25 -0.7 64,400 + MPMX20_00063 0.27 +0.3 64,400 + MPMX20_00063 0.27 -1.1 64,454 - MPMX20_00063 0.34 +1.8 64,483 - MPMX20_00063 0.38 -0.4 64,547 + MPMX20_00063 0.46 -1.0 64,547 + MPMX20_00063 0.46 +1.6 64,597 + MPMX20_00063 0.52 +3.2 64,641 - MPMX20_00063 0.57 +1.7 64,645 + MPMX20_00063 0.58 -1.2 64,806 + MPMX20_00063 0.78 -1.2 64,814 - MPMX20_00063 0.79 -0.7 64,814 - MPMX20_00063 0.79 +0.3 64,838 - MPMX20_00063 0.82 -1.6 64,853 - MPMX20_00063 0.84 +0.1 64,952 + +0.1 64,952 + +0.3 64,960 - -0.3 64,968 + +0.9 64,968 + -2.1 64,974 + -1.5 64,986 + +5.5 64,989 - +2.4 64,989 - -0.4 64,994 + +1.5 64,994 + -1.2 64,994 - -0.4 64,994 - +0.1 65,002 - -0.1 65,002 - +0.7 65,008 + -0.2 65,017 - -1.3 65,039 + +1.4 65,071 + +0.5 65,071 + -1.4 65,079 - -0.3 65,094 + -0.9 65,102 - -0.6 65,120 + -0.4 65,128 - -0.4 65,162 + MPMX20_00064 0.13 +0.4 65,244 + MPMX20_00064 0.21 -0.8 65,275 + MPMX20_00064 0.24 -1.5 65,386 - MPMX20_00064 0.35 +0.8 65,407 + MPMX20_00064 0.37 -0.9 65,426 + MPMX20_00064 0.39 +0.5 65,426 + MPMX20_00064 0.39 +0.5 65,434 - MPMX20_00064 0.40 +1.8 65,479 + MPMX20_00064 0.44 +0.3 65,479 - MPMX20_00064 0.44 -1.5 65,479 - MPMX20_00064 0.44 +0.2 65,479 - MPMX20_00064 0.44 -0.4 65,481 + MPMX20_00064 0.44 +0.8 65,481 + MPMX20_00064 0.44 -0.1 65,489 - MPMX20_00064 0.45 +1.2 65,489 - MPMX20_00064 0.45 -0.4 65,499 + MPMX20_00064 0.46 +0.4 65,500 + MPMX20_00064 0.46 -1.0 65,507 - MPMX20_00064 0.47 -1.5 65,642 + MPMX20_00064 0.60 +0.2 65,665 + MPMX20_00064 0.62 +1.4 65,665 + MPMX20_00064 0.62 -0.4 65,673 - MPMX20_00064 0.63 +1.4 65,673 - MPMX20_00064 0.63 -0.3 65,707 + MPMX20_00064 0.66 +3.0 65,707 + MPMX20_00064 0.66 -0.2 65,707 + MPMX20_00064 0.66 -1.9 65,715 - MPMX20_00064 0.67 +0.4 65,715 - MPMX20_00064 0.67 -0.2 65,715 - MPMX20_00064 0.67 -0.3 65,715 - MPMX20_00064 0.67 -1.9 65,771 - MPMX20_00064 0.72 +0.1 65,773 + MPMX20_00064 0.73 -1.5 65,781 - MPMX20_00064 0.73 +0.4 65,781 - MPMX20_00064 0.73 +1.8 65,880 + MPMX20_00064 0.83 -1.3 65,880 + MPMX20_00064 0.83 -0.7 65,888 - MPMX20_00064 0.84 +1.6 65,936 + MPMX20_00064 0.88 -0.5 65,944 - MPMX20_00064 0.89 -0.4 65,944 - MPMX20_00064 0.89 +2.4 65,944 - MPMX20_00064 0.89 +1.7 65,946 + MPMX20_00064 0.89 -1.1 65,946 + MPMX20_00064 0.89 -2.3
Or see this region's nucleotide sequence