Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02325 and MPMX20_02326 are separated by 244 nucleotides MPMX20_02326 and MPMX20_02327 are separated by 0 nucleotides MPMX20_02327 and MPMX20_02328 are separated by 16 nucleotides
MPMX20_02325: MPMX20_02325 - hypothetical protein, at 2,447,558 to 2,448,280
_02325
MPMX20_02326: MPMX20_02326 - hypothetical protein, at 2,448,525 to 2,449,073
_02326
MPMX20_02327: MPMX20_02327 - Glycogen operon protein GlgX, at 2,449,074 to 2,451,149
_02327
MPMX20_02328: MPMX20_02328 - Maltooligosyl trehalose synthase, at 2,451,166 to 2,453,634
_02328
Position (kb)
2449
2450
2451
2452 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2448.085 kb on + strand, within MPMX20_02325 at 2448.085 kb on + strand, within MPMX20_02325 at 2448.085 kb on + strand, within MPMX20_02325 at 2448.093 kb on - strand, within MPMX20_02325 at 2448.093 kb on - strand, within MPMX20_02325 at 2448.265 kb on + strand at 2448.265 kb on + strand at 2448.273 kb on - strand at 2448.273 kb on - strand at 2448.273 kb on - strand at 2448.292 kb on - strand at 2448.292 kb on - strand at 2448.292 kb on - strand at 2448.292 kb on - strand at 2448.292 kb on - strand at 2448.302 kb on - strand at 2448.377 kb on + strand at 2448.501 kb on + strand at 2448.510 kb on + strand at 2448.521 kb on + strand at 2448.529 kb on + strand at 2448.529 kb on - strand at 2448.529 kb on - strand at 2448.529 kb on - strand at 2448.630 kb on + strand, within MPMX20_02326 at 2448.636 kb on + strand, within MPMX20_02326 at 2448.753 kb on - strand, within MPMX20_02326 at 2448.787 kb on + strand, within MPMX20_02326 at 2448.823 kb on + strand, within MPMX20_02326 at 2448.842 kb on + strand, within MPMX20_02326 at 2448.847 kb on + strand, within MPMX20_02326 at 2448.850 kb on - strand, within MPMX20_02326 at 2448.964 kb on - strand, within MPMX20_02326 at 2448.998 kb on + strand, within MPMX20_02326 at 2449.000 kb on - strand, within MPMX20_02326 at 2449.022 kb on + strand at 2449.022 kb on + strand at 2449.027 kb on + strand at 2449.027 kb on + strand at 2449.030 kb on - strand at 2449.035 kb on + strand at 2449.072 kb on + strand at 2449.072 kb on + strand at 2449.072 kb on + strand at 2449.072 kb on + strand at 2449.072 kb on + strand at 2449.072 kb on + strand at 2449.072 kb on + strand at 2449.072 kb on + strand at 2449.076 kb on - strand at 2449.080 kb on - strand at 2449.080 kb on - strand at 2449.080 kb on - strand at 2449.080 kb on - strand at 2449.080 kb on - strand at 2449.126 kb on + strand at 2449.131 kb on + strand at 2449.147 kb on + strand at 2449.274 kb on - strand at 2449.301 kb on - strand, within MPMX20_02327 at 2449.311 kb on + strand, within MPMX20_02327 at 2449.312 kb on - strand, within MPMX20_02327 at 2449.408 kb on + strand, within MPMX20_02327 at 2449.500 kb on - strand, within MPMX20_02327 at 2449.500 kb on - strand, within MPMX20_02327 at 2449.509 kb on + strand, within MPMX20_02327 at 2449.509 kb on + strand, within MPMX20_02327 at 2449.517 kb on - strand, within MPMX20_02327 at 2449.579 kb on - strand, within MPMX20_02327 at 2449.598 kb on - strand, within MPMX20_02327 at 2449.626 kb on + strand, within MPMX20_02327 at 2449.705 kb on + strand, within MPMX20_02327 at 2449.713 kb on + strand, within MPMX20_02327 at 2449.761 kb on + strand, within MPMX20_02327 at 2449.766 kb on + strand, within MPMX20_02327 at 2449.811 kb on + strand, within MPMX20_02327 at 2449.838 kb on - strand, within MPMX20_02327 at 2449.885 kb on - strand, within MPMX20_02327 at 2449.885 kb on - strand, within MPMX20_02327 at 2449.936 kb on - strand, within MPMX20_02327 at 2449.981 kb on + strand, within MPMX20_02327 at 2449.994 kb on - strand, within MPMX20_02327 at 2450.017 kb on + strand, within MPMX20_02327 at 2450.057 kb on + strand, within MPMX20_02327 at 2450.057 kb on + strand, within MPMX20_02327 at 2450.057 kb on + strand, within MPMX20_02327 at 2450.057 kb on + strand, within MPMX20_02327 at 2450.057 kb on + strand, within MPMX20_02327 at 2450.064 kb on + strand, within MPMX20_02327 at 2450.079 kb on + strand, within MPMX20_02327 at 2450.079 kb on + strand, within MPMX20_02327 at 2450.079 kb on + strand, within MPMX20_02327 at 2450.087 kb on - strand, within MPMX20_02327 at 2450.244 kb on - strand, within MPMX20_02327 at 2450.282 kb on + strand, within MPMX20_02327 at 2450.290 kb on - strand, within MPMX20_02327 at 2450.290 kb on - strand, within MPMX20_02327 at 2450.303 kb on + strand, within MPMX20_02327 at 2450.316 kb on + strand, within MPMX20_02327 at 2450.324 kb on - strand, within MPMX20_02327 at 2450.324 kb on - strand, within MPMX20_02327 at 2450.324 kb on - strand, within MPMX20_02327 at 2450.327 kb on + strand, within MPMX20_02327 at 2450.335 kb on - strand, within MPMX20_02327 at 2450.340 kb on + strand, within MPMX20_02327 at 2450.347 kb on - strand, within MPMX20_02327 at 2450.370 kb on - strand, within MPMX20_02327 at 2450.391 kb on - strand, within MPMX20_02327 at 2450.391 kb on - strand, within MPMX20_02327 at 2450.477 kb on + strand, within MPMX20_02327 at 2450.477 kb on + strand, within MPMX20_02327 at 2450.477 kb on + strand, within MPMX20_02327 at 2450.477 kb on + strand, within MPMX20_02327 at 2450.485 kb on - strand, within MPMX20_02327 at 2450.550 kb on + strand, within MPMX20_02327 at 2450.550 kb on + strand, within MPMX20_02327 at 2450.599 kb on - strand, within MPMX20_02327 at 2450.618 kb on + strand, within MPMX20_02327 at 2450.618 kb on + strand, within MPMX20_02327 at 2450.618 kb on + strand, within MPMX20_02327 at 2450.618 kb on + strand, within MPMX20_02327 at 2450.626 kb on + strand, within MPMX20_02327 at 2450.626 kb on - strand, within MPMX20_02327 at 2450.626 kb on - strand, within MPMX20_02327 at 2450.633 kb on - strand, within MPMX20_02327 at 2450.640 kb on + strand, within MPMX20_02327 at 2450.648 kb on - strand, within MPMX20_02327 at 2450.672 kb on - strand, within MPMX20_02327 at 2450.707 kb on + strand, within MPMX20_02327 at 2450.781 kb on + strand, within MPMX20_02327 at 2450.839 kb on - strand, within MPMX20_02327 at 2450.924 kb on - strand, within MPMX20_02327 at 2450.955 kb on + strand at 2451.031 kb on + strand at 2451.031 kb on + strand at 2451.040 kb on - strand at 2451.060 kb on - strand at 2451.060 kb on - strand at 2451.060 kb on - strand at 2451.107 kb on + strand at 2451.107 kb on + strand at 2451.141 kb on - strand at 2451.186 kb on + strand at 2451.186 kb on + strand at 2451.201 kb on + strand at 2451.217 kb on - strand at 2451.245 kb on + strand at 2451.246 kb on - strand at 2451.307 kb on + strand at 2451.318 kb on + strand at 2451.449 kb on + strand, within MPMX20_02328 at 2451.459 kb on + strand, within MPMX20_02328 at 2451.467 kb on - strand, within MPMX20_02328 at 2451.481 kb on + strand, within MPMX20_02328 at 2451.515 kb on - strand, within MPMX20_02328 at 2451.527 kb on - strand, within MPMX20_02328 at 2451.624 kb on + strand, within MPMX20_02328 at 2451.632 kb on - strand, within MPMX20_02328 at 2451.632 kb on - strand, within MPMX20_02328 at 2451.641 kb on + strand, within MPMX20_02328 at 2451.641 kb on + strand, within MPMX20_02328 at 2451.644 kb on - strand, within MPMX20_02328 at 2451.696 kb on + strand, within MPMX20_02328 at 2451.704 kb on - strand, within MPMX20_02328 at 2451.735 kb on + strand, within MPMX20_02328 at 2451.794 kb on - strand, within MPMX20_02328 at 2451.799 kb on + strand, within MPMX20_02328 at 2451.807 kb on - strand, within MPMX20_02328 at 2451.807 kb on - strand, within MPMX20_02328 at 2451.807 kb on - strand, within MPMX20_02328 at 2451.807 kb on - strand, within MPMX20_02328 at 2451.807 kb on - strand, within MPMX20_02328 at 2451.814 kb on + strand, within MPMX20_02328 at 2451.831 kb on + strand, within MPMX20_02328 at 2451.939 kb on + strand, within MPMX20_02328 at 2452.004 kb on - strand, within MPMX20_02328 at 2452.079 kb on - strand, within MPMX20_02328 at 2452.089 kb on + strand, within MPMX20_02328 at 2452.089 kb on + strand, within MPMX20_02328 at 2452.097 kb on - strand, within MPMX20_02328 at 2452.099 kb on - strand, within MPMX20_02328 at 2452.099 kb on - strand, within MPMX20_02328 at 2452.099 kb on - strand, within MPMX20_02328
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 2,448,085 + MPMX20_02325 0.73 -1.7 2,448,085 + MPMX20_02325 0.73 -2.7 2,448,085 + MPMX20_02325 0.73 -0.6 2,448,093 - MPMX20_02325 0.74 -1.2 2,448,093 - MPMX20_02325 0.74 +0.2 2,448,265 + -1.9 2,448,265 + +0.2 2,448,273 - +0.3 2,448,273 - -1.9 2,448,273 - -0.6 2,448,292 - +0.7 2,448,292 - -2.0 2,448,292 - -2.1 2,448,292 - -2.4 2,448,292 - -0.6 2,448,302 - +1.8 2,448,377 + -2.9 2,448,501 + -0.0 2,448,510 + +0.8 2,448,521 + +0.0 2,448,529 + +1.7 2,448,529 - +1.7 2,448,529 - +2.1 2,448,529 - +3.5 2,448,630 + MPMX20_02326 0.19 -0.6 2,448,636 + MPMX20_02326 0.20 -2.3 2,448,753 - MPMX20_02326 0.42 -0.6 2,448,787 + MPMX20_02326 0.48 -0.7 2,448,823 + MPMX20_02326 0.54 -1.3 2,448,842 + MPMX20_02326 0.58 -2.1 2,448,847 + MPMX20_02326 0.59 -0.9 2,448,850 - MPMX20_02326 0.59 +1.3 2,448,964 - MPMX20_02326 0.80 +1.4 2,448,998 + MPMX20_02326 0.86 +0.6 2,449,000 - MPMX20_02326 0.87 -0.5 2,449,022 + +1.3 2,449,022 + -1.5 2,449,027 + -2.0 2,449,027 + +1.7 2,449,030 - -0.6 2,449,035 + +1.4 2,449,072 + -2.5 2,449,072 + -1.9 2,449,072 + -1.7 2,449,072 + +0.3 2,449,072 + +0.3 2,449,072 + +0.8 2,449,072 + -0.6 2,449,072 + +1.6 2,449,076 - +0.2 2,449,080 - -1.5 2,449,080 - -0.9 2,449,080 - -2.6 2,449,080 - +0.4 2,449,080 - -0.7 2,449,126 + +0.1 2,449,131 + -0.5 2,449,147 + +0.4 2,449,274 - +1.2 2,449,301 - MPMX20_02327 0.11 +0.7 2,449,311 + MPMX20_02327 0.11 -2.0 2,449,312 - MPMX20_02327 0.11 +1.3 2,449,408 + MPMX20_02327 0.16 +0.6 2,449,500 - MPMX20_02327 0.21 +0.4 2,449,500 - MPMX20_02327 0.21 -0.1 2,449,509 + MPMX20_02327 0.21 -0.7 2,449,509 + MPMX20_02327 0.21 +1.4 2,449,517 - MPMX20_02327 0.21 +1.0 2,449,579 - MPMX20_02327 0.24 -3.3 2,449,598 - MPMX20_02327 0.25 +0.6 2,449,626 + MPMX20_02327 0.27 +1.4 2,449,705 + MPMX20_02327 0.30 -0.5 2,449,713 + MPMX20_02327 0.31 -0.5 2,449,761 + MPMX20_02327 0.33 +0.5 2,449,766 + MPMX20_02327 0.33 +0.1 2,449,811 + MPMX20_02327 0.36 -0.7 2,449,838 - MPMX20_02327 0.37 +1.2 2,449,885 - MPMX20_02327 0.39 -1.3 2,449,885 - MPMX20_02327 0.39 -0.8 2,449,936 - MPMX20_02327 0.42 -1.4 2,449,981 + MPMX20_02327 0.44 +0.4 2,449,994 - MPMX20_02327 0.44 -0.8 2,450,017 + MPMX20_02327 0.45 -0.3 2,450,057 + MPMX20_02327 0.47 +0.4 2,450,057 + MPMX20_02327 0.47 -1.0 2,450,057 + MPMX20_02327 0.47 -2.2 2,450,057 + MPMX20_02327 0.47 -0.9 2,450,057 + MPMX20_02327 0.47 -0.2 2,450,064 + MPMX20_02327 0.48 -1.4 2,450,079 + MPMX20_02327 0.48 -0.4 2,450,079 + MPMX20_02327 0.48 -0.2 2,450,079 + MPMX20_02327 0.48 -0.6 2,450,087 - MPMX20_02327 0.49 +1.2 2,450,244 - MPMX20_02327 0.56 -0.4 2,450,282 + MPMX20_02327 0.58 +1.8 2,450,290 - MPMX20_02327 0.59 -0.6 2,450,290 - MPMX20_02327 0.59 +0.8 2,450,303 + MPMX20_02327 0.59 -0.2 2,450,316 + MPMX20_02327 0.60 -2.8 2,450,324 - MPMX20_02327 0.60 +0.2 2,450,324 - MPMX20_02327 0.60 +0.4 2,450,324 - MPMX20_02327 0.60 +0.8 2,450,327 + MPMX20_02327 0.60 -0.0 2,450,335 - MPMX20_02327 0.61 -1.4 2,450,340 + MPMX20_02327 0.61 -2.3 2,450,347 - MPMX20_02327 0.61 +1.0 2,450,370 - MPMX20_02327 0.62 +1.3 2,450,391 - MPMX20_02327 0.63 -2.0 2,450,391 - MPMX20_02327 0.63 -1.3 2,450,477 + MPMX20_02327 0.68 -1.5 2,450,477 + MPMX20_02327 0.68 -0.6 2,450,477 + MPMX20_02327 0.68 -0.2 2,450,477 + MPMX20_02327 0.68 -0.3 2,450,485 - MPMX20_02327 0.68 -0.3 2,450,550 + MPMX20_02327 0.71 -1.7 2,450,550 + MPMX20_02327 0.71 -0.5 2,450,599 - MPMX20_02327 0.73 +1.0 2,450,618 + MPMX20_02327 0.74 -1.4 2,450,618 + MPMX20_02327 0.74 -3.0 2,450,618 + MPMX20_02327 0.74 -0.2 2,450,618 + MPMX20_02327 0.74 +0.9 2,450,626 + MPMX20_02327 0.75 +0.1 2,450,626 - MPMX20_02327 0.75 -0.6 2,450,626 - MPMX20_02327 0.75 -0.3 2,450,633 - MPMX20_02327 0.75 +2.4 2,450,640 + MPMX20_02327 0.75 -0.4 2,450,648 - MPMX20_02327 0.76 -1.9 2,450,672 - MPMX20_02327 0.77 -2.1 2,450,707 + MPMX20_02327 0.79 +2.4 2,450,781 + MPMX20_02327 0.82 -0.8 2,450,839 - MPMX20_02327 0.85 -0.7 2,450,924 - MPMX20_02327 0.89 -1.3 2,450,955 + -0.0 2,451,031 + +0.0 2,451,031 + -1.9 2,451,040 - -0.2 2,451,060 - -1.2 2,451,060 - +0.1 2,451,060 - -0.2 2,451,107 + -0.0 2,451,107 + -1.8 2,451,141 - +2.4 2,451,186 + +1.4 2,451,186 + +0.3 2,451,201 + -0.4 2,451,217 - -0.2 2,451,245 + -3.2 2,451,246 - -0.1 2,451,307 + +0.7 2,451,318 + +2.8 2,451,449 + MPMX20_02328 0.11 +0.8 2,451,459 + MPMX20_02328 0.12 -0.2 2,451,467 - MPMX20_02328 0.12 -0.2 2,451,481 + MPMX20_02328 0.13 -3.4 2,451,515 - MPMX20_02328 0.14 -2.0 2,451,527 - MPMX20_02328 0.15 -1.0 2,451,624 + MPMX20_02328 0.19 +0.1 2,451,632 - MPMX20_02328 0.19 -0.2 2,451,632 - MPMX20_02328 0.19 -1.7 2,451,641 + MPMX20_02328 0.19 +0.2 2,451,641 + MPMX20_02328 0.19 +0.8 2,451,644 - MPMX20_02328 0.19 -1.5 2,451,696 + MPMX20_02328 0.21 -1.9 2,451,704 - MPMX20_02328 0.22 +1.0 2,451,735 + MPMX20_02328 0.23 -0.1 2,451,794 - MPMX20_02328 0.25 +0.6 2,451,799 + MPMX20_02328 0.26 -1.0 2,451,807 - MPMX20_02328 0.26 +1.5 2,451,807 - MPMX20_02328 0.26 -0.7 2,451,807 - MPMX20_02328 0.26 -0.8 2,451,807 - MPMX20_02328 0.26 -1.1 2,451,807 - MPMX20_02328 0.26 -0.6 2,451,814 + MPMX20_02328 0.26 +1.4 2,451,831 + MPMX20_02328 0.27 -3.3 2,451,939 + MPMX20_02328 0.31 -2.0 2,452,004 - MPMX20_02328 0.34 +0.1 2,452,079 - MPMX20_02328 0.37 -2.4 2,452,089 + MPMX20_02328 0.37 -0.2 2,452,089 + MPMX20_02328 0.37 -1.0 2,452,097 - MPMX20_02328 0.38 -0.9 2,452,099 - MPMX20_02328 0.38 -2.3 2,452,099 - MPMX20_02328 0.38 -3.0 2,452,099 - MPMX20_02328 0.38 -2.2
Or see this region's nucleotide sequence