Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01908

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01907 and MPMX20_01908 are separated by 59 nucleotidesMPMX20_01908 and MPMX20_01909 are separated by 10 nucleotides MPMX20_01907: MPMX20_01907 - Protein adenylyltransferase SelO, at 1,997,732 to 1,999,174 _01907 MPMX20_01908: MPMX20_01908 - D-beta-hydroxybutyrate dehydrogenase, at 1,999,234 to 2,000,004 _01908 MPMX20_01909: MPMX20_01909 - hypothetical protein, at 2,000,015 to 2,001,406 _01909 Position (kb) 1999 2000 2001Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1998.238 kb on + strand, within MPMX20_01907at 1998.247 kb on - strand, within MPMX20_01907at 1998.251 kb on + strand, within MPMX20_01907at 1998.251 kb on + strand, within MPMX20_01907at 1998.251 kb on + strand, within MPMX20_01907at 1998.251 kb on + strand, within MPMX20_01907at 1998.251 kb on + strand, within MPMX20_01907at 1998.401 kb on + strand, within MPMX20_01907at 1998.409 kb on - strand, within MPMX20_01907at 1998.416 kb on - strand, within MPMX20_01907at 1998.485 kb on - strand, within MPMX20_01907at 1998.498 kb on + strand, within MPMX20_01907at 1998.540 kb on - strand, within MPMX20_01907at 1998.600 kb on + strand, within MPMX20_01907at 1998.608 kb on - strand, within MPMX20_01907at 1998.662 kb on + strand, within MPMX20_01907at 1998.789 kb on + strand, within MPMX20_01907at 1998.838 kb on + strand, within MPMX20_01907at 1998.843 kb on + strand, within MPMX20_01907at 1998.846 kb on - strand, within MPMX20_01907at 1998.856 kb on - strand, within MPMX20_01907at 1998.900 kb on + strand, within MPMX20_01907at 1998.982 kb on - strand, within MPMX20_01907at 1999.035 kb on - strandat 1999.037 kb on - strandat 1999.075 kb on + strandat 1999.090 kb on - strandat 1999.164 kb on + strandat 1999.164 kb on + strandat 1999.164 kb on + strandat 1999.164 kb on + strandat 1999.164 kb on + strandat 1999.164 kb on + strandat 1999.164 kb on + strandat 1999.164 kb on + strandat 1999.172 kb on - strandat 1999.172 kb on - strandat 1999.172 kb on - strandat 1999.172 kb on - strandat 1999.261 kb on + strandat 1999.279 kb on + strandat 1999.281 kb on + strandat 1999.597 kb on - strand, within MPMX20_01908at 1999.634 kb on - strand, within MPMX20_01908at 1999.729 kb on + strand, within MPMX20_01908at 1999.731 kb on + strand, within MPMX20_01908at 1999.742 kb on - strand, within MPMX20_01908at 1999.755 kb on + strand, within MPMX20_01908at 1999.789 kb on + strand, within MPMX20_01908at 1999.799 kb on + strand, within MPMX20_01908at 1999.807 kb on - strand, within MPMX20_01908at 1999.824 kb on + strand, within MPMX20_01908at 1999.855 kb on - strand, within MPMX20_01908at 1999.950 kb on + strandat 1999.958 kb on - strandat 1999.969 kb on + strandat 2000.022 kb on + strandat 2000.105 kb on - strandat 2000.163 kb on + strand, within MPMX20_01909at 2000.201 kb on + strand, within MPMX20_01909at 2000.217 kb on - strand, within MPMX20_01909at 2000.325 kb on - strand, within MPMX20_01909at 2000.488 kb on + strand, within MPMX20_01909at 2000.559 kb on + strand, within MPMX20_01909at 2000.601 kb on - strand, within MPMX20_01909at 2000.617 kb on + strand, within MPMX20_01909at 2000.625 kb on - strand, within MPMX20_01909at 2000.725 kb on + strand, within MPMX20_01909at 2000.725 kb on + strand, within MPMX20_01909at 2000.733 kb on - strand, within MPMX20_01909at 2000.733 kb on - strand, within MPMX20_01909at 2000.733 kb on - strand, within MPMX20_01909at 2000.733 kb on - strand, within MPMX20_01909at 2000.733 kb on - strand, within MPMX20_01909at 2000.733 kb on - strand, within MPMX20_01909at 2000.733 kb on - strand, within MPMX20_01909at 2000.733 kb on - strand, within MPMX20_01909at 2000.777 kb on - strand, within MPMX20_01909at 2000.814 kb on + strand, within MPMX20_01909at 2000.814 kb on + strand, within MPMX20_01909at 2000.814 kb on + strand, within MPMX20_01909at 2000.822 kb on - strand, within MPMX20_01909at 2000.824 kb on + strand, within MPMX20_01909at 2000.832 kb on - strand, within MPMX20_01909at 2000.832 kb on - strand, within MPMX20_01909at 2000.832 kb on - strand, within MPMX20_01909at 2000.832 kb on - strand, within MPMX20_01909at 2000.852 kb on + strand, within MPMX20_01909at 2000.865 kb on - strand, within MPMX20_01909at 2000.865 kb on - strand, within MPMX20_01909at 2000.874 kb on + strand, within MPMX20_01909at 2000.874 kb on + strand, within MPMX20_01909at 2000.874 kb on + strand, within MPMX20_01909at 2000.874 kb on + strand, within MPMX20_01909at 2000.874 kb on + strand, within MPMX20_01909at 2000.882 kb on - strand, within MPMX20_01909at 2000.882 kb on - strand, within MPMX20_01909at 2000.928 kb on + strand, within MPMX20_01909at 2000.984 kb on + strand, within MPMX20_01909

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
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1,998,238 + MPMX20_01907 0.35 -0.2
1,998,247 - MPMX20_01907 0.36 -0.6
1,998,251 + MPMX20_01907 0.36 -1.3
1,998,251 + MPMX20_01907 0.36 -0.6
1,998,251 + MPMX20_01907 0.36 +1.2
1,998,251 + MPMX20_01907 0.36 -2.3
1,998,251 + MPMX20_01907 0.36 +0.3
1,998,401 + MPMX20_01907 0.46 -0.4
1,998,409 - MPMX20_01907 0.47 -1.1
1,998,416 - MPMX20_01907 0.47 +0.8
1,998,485 - MPMX20_01907 0.52 +1.0
1,998,498 + MPMX20_01907 0.53 -0.6
1,998,540 - MPMX20_01907 0.56 -1.9
1,998,600 + MPMX20_01907 0.60 +0.7
1,998,608 - MPMX20_01907 0.61 +0.2
1,998,662 + MPMX20_01907 0.64 -0.9
1,998,789 + MPMX20_01907 0.73 -0.9
1,998,838 + MPMX20_01907 0.77 -0.4
1,998,843 + MPMX20_01907 0.77 +0.4
1,998,846 - MPMX20_01907 0.77 +0.6
1,998,856 - MPMX20_01907 0.78 -2.0
1,998,900 + MPMX20_01907 0.81 +0.0
1,998,982 - MPMX20_01907 0.87 -1.1
1,999,035 - -0.8
1,999,037 - +1.0
1,999,075 + -0.1
1,999,090 - -0.2
1,999,164 + +0.2
1,999,164 + -2.4
1,999,164 + -1.7
1,999,164 + -2.4
1,999,164 + -2.5
1,999,164 + +0.2
1,999,164 + -0.2
1,999,164 + -1.1
1,999,172 - +0.3
1,999,172 - -1.5
1,999,172 - -0.4
1,999,172 - -1.8
1,999,261 + -1.1
1,999,279 + -0.8
1,999,281 + +0.8
1,999,597 - MPMX20_01908 0.47 -1.1
1,999,634 - MPMX20_01908 0.52 -1.7
1,999,729 + MPMX20_01908 0.64 -0.7
1,999,731 + MPMX20_01908 0.64 +2.0
1,999,742 - MPMX20_01908 0.66 -3.4
1,999,755 + MPMX20_01908 0.68 -1.2
1,999,789 + MPMX20_01908 0.72 +0.5
1,999,799 + MPMX20_01908 0.73 -0.6
1,999,807 - MPMX20_01908 0.74 -1.4
1,999,824 + MPMX20_01908 0.77 -2.7
1,999,855 - MPMX20_01908 0.81 +0.5
1,999,950 + -1.2
1,999,958 - -2.0
1,999,969 + +1.8
2,000,022 + -0.9
2,000,105 - -0.0
2,000,163 + MPMX20_01909 0.11 +0.4
2,000,201 + MPMX20_01909 0.13 +0.7
2,000,217 - MPMX20_01909 0.15 +0.9
2,000,325 - MPMX20_01909 0.22 +1.8
2,000,488 + MPMX20_01909 0.34 +0.4
2,000,559 + MPMX20_01909 0.39 -0.6
2,000,601 - MPMX20_01909 0.42 -0.1
2,000,617 + MPMX20_01909 0.43 +0.9
2,000,625 - MPMX20_01909 0.44 -1.9
2,000,725 + MPMX20_01909 0.51 +3.1
2,000,725 + MPMX20_01909 0.51 +1.4
2,000,733 - MPMX20_01909 0.52 +0.4
2,000,733 - MPMX20_01909 0.52 -0.8
2,000,733 - MPMX20_01909 0.52 -0.4
2,000,733 - MPMX20_01909 0.52 -3.1
2,000,733 - MPMX20_01909 0.52 -0.4
2,000,733 - MPMX20_01909 0.52 +1.6
2,000,733 - MPMX20_01909 0.52 -0.3
2,000,733 - MPMX20_01909 0.52 -0.6
2,000,777 - MPMX20_01909 0.55 +2.4
2,000,814 + MPMX20_01909 0.57 -1.3
2,000,814 + MPMX20_01909 0.57 -2.7
2,000,814 + MPMX20_01909 0.57 +0.8
2,000,822 - MPMX20_01909 0.58 +3.2
2,000,824 + MPMX20_01909 0.58 +1.5
2,000,832 - MPMX20_01909 0.59 -0.6
2,000,832 - MPMX20_01909 0.59 -0.6
2,000,832 - MPMX20_01909 0.59 -1.7
2,000,832 - MPMX20_01909 0.59 +1.2
2,000,852 + MPMX20_01909 0.60 -1.1
2,000,865 - MPMX20_01909 0.61 -0.8
2,000,865 - MPMX20_01909 0.61 +1.4
2,000,874 + MPMX20_01909 0.62 +0.7
2,000,874 + MPMX20_01909 0.62 -2.5
2,000,874 + MPMX20_01909 0.62 -1.1
2,000,874 + MPMX20_01909 0.62 -0.3
2,000,874 + MPMX20_01909 0.62 -0.8
2,000,882 - MPMX20_01909 0.62 +0.5
2,000,882 - MPMX20_01909 0.62 +0.1
2,000,928 + MPMX20_01909 0.66 -0.3
2,000,984 + MPMX20_01909 0.70 -0.4

Or see this region's nucleotide sequence