Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01907 and MPMX20_01908 are separated by 59 nucleotides MPMX20_01908 and MPMX20_01909 are separated by 10 nucleotides
MPMX20_01907: MPMX20_01907 - Protein adenylyltransferase SelO, at 1,997,732 to 1,999,174
_01907
MPMX20_01908: MPMX20_01908 - D-beta-hydroxybutyrate dehydrogenase, at 1,999,234 to 2,000,004
_01908
MPMX20_01909: MPMX20_01909 - hypothetical protein, at 2,000,015 to 2,001,406
_01909
Position (kb)
1999
2000
2001 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1998.238 kb on + strand, within MPMX20_01907 at 1998.247 kb on - strand, within MPMX20_01907 at 1998.251 kb on + strand, within MPMX20_01907 at 1998.251 kb on + strand, within MPMX20_01907 at 1998.251 kb on + strand, within MPMX20_01907 at 1998.251 kb on + strand, within MPMX20_01907 at 1998.251 kb on + strand, within MPMX20_01907 at 1998.401 kb on + strand, within MPMX20_01907 at 1998.409 kb on - strand, within MPMX20_01907 at 1998.416 kb on - strand, within MPMX20_01907 at 1998.485 kb on - strand, within MPMX20_01907 at 1998.498 kb on + strand, within MPMX20_01907 at 1998.540 kb on - strand, within MPMX20_01907 at 1998.600 kb on + strand, within MPMX20_01907 at 1998.608 kb on - strand, within MPMX20_01907 at 1998.662 kb on + strand, within MPMX20_01907 at 1998.789 kb on + strand, within MPMX20_01907 at 1998.838 kb on + strand, within MPMX20_01907 at 1998.843 kb on + strand, within MPMX20_01907 at 1998.846 kb on - strand, within MPMX20_01907 at 1998.856 kb on - strand, within MPMX20_01907 at 1998.900 kb on + strand, within MPMX20_01907 at 1998.982 kb on - strand, within MPMX20_01907 at 1999.035 kb on - strand at 1999.037 kb on - strand at 1999.075 kb on + strand at 1999.090 kb on - strand at 1999.164 kb on + strand at 1999.164 kb on + strand at 1999.164 kb on + strand at 1999.164 kb on + strand at 1999.164 kb on + strand at 1999.164 kb on + strand at 1999.164 kb on + strand at 1999.164 kb on + strand at 1999.172 kb on - strand at 1999.172 kb on - strand at 1999.172 kb on - strand at 1999.172 kb on - strand at 1999.261 kb on + strand at 1999.279 kb on + strand at 1999.281 kb on + strand at 1999.597 kb on - strand, within MPMX20_01908 at 1999.634 kb on - strand, within MPMX20_01908 at 1999.729 kb on + strand, within MPMX20_01908 at 1999.731 kb on + strand, within MPMX20_01908 at 1999.742 kb on - strand, within MPMX20_01908 at 1999.755 kb on + strand, within MPMX20_01908 at 1999.789 kb on + strand, within MPMX20_01908 at 1999.799 kb on + strand, within MPMX20_01908 at 1999.807 kb on - strand, within MPMX20_01908 at 1999.824 kb on + strand, within MPMX20_01908 at 1999.855 kb on - strand, within MPMX20_01908 at 1999.950 kb on + strand at 1999.958 kb on - strand at 1999.969 kb on + strand at 2000.022 kb on + strand at 2000.105 kb on - strand at 2000.163 kb on + strand, within MPMX20_01909 at 2000.201 kb on + strand, within MPMX20_01909 at 2000.217 kb on - strand, within MPMX20_01909 at 2000.325 kb on - strand, within MPMX20_01909 at 2000.488 kb on + strand, within MPMX20_01909 at 2000.559 kb on + strand, within MPMX20_01909 at 2000.601 kb on - strand, within MPMX20_01909 at 2000.617 kb on + strand, within MPMX20_01909 at 2000.625 kb on - strand, within MPMX20_01909 at 2000.725 kb on + strand, within MPMX20_01909 at 2000.725 kb on + strand, within MPMX20_01909 at 2000.733 kb on - strand, within MPMX20_01909 at 2000.733 kb on - strand, within MPMX20_01909 at 2000.733 kb on - strand, within MPMX20_01909 at 2000.733 kb on - strand, within MPMX20_01909 at 2000.733 kb on - strand, within MPMX20_01909 at 2000.733 kb on - strand, within MPMX20_01909 at 2000.733 kb on - strand, within MPMX20_01909 at 2000.733 kb on - strand, within MPMX20_01909 at 2000.777 kb on - strand, within MPMX20_01909 at 2000.814 kb on + strand, within MPMX20_01909 at 2000.814 kb on + strand, within MPMX20_01909 at 2000.814 kb on + strand, within MPMX20_01909 at 2000.822 kb on - strand, within MPMX20_01909 at 2000.824 kb on + strand, within MPMX20_01909 at 2000.832 kb on - strand, within MPMX20_01909 at 2000.832 kb on - strand, within MPMX20_01909 at 2000.832 kb on - strand, within MPMX20_01909 at 2000.832 kb on - strand, within MPMX20_01909 at 2000.852 kb on + strand, within MPMX20_01909 at 2000.865 kb on - strand, within MPMX20_01909 at 2000.865 kb on - strand, within MPMX20_01909 at 2000.874 kb on + strand, within MPMX20_01909 at 2000.874 kb on + strand, within MPMX20_01909 at 2000.874 kb on + strand, within MPMX20_01909 at 2000.874 kb on + strand, within MPMX20_01909 at 2000.874 kb on + strand, within MPMX20_01909 at 2000.882 kb on - strand, within MPMX20_01909 at 2000.882 kb on - strand, within MPMX20_01909 at 2000.928 kb on + strand, within MPMX20_01909 at 2000.984 kb on + strand, within MPMX20_01909
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_046 remove 1,998,238 + MPMX20_01907 0.35 -0.2 1,998,247 - MPMX20_01907 0.36 -0.6 1,998,251 + MPMX20_01907 0.36 -1.3 1,998,251 + MPMX20_01907 0.36 -0.6 1,998,251 + MPMX20_01907 0.36 +1.2 1,998,251 + MPMX20_01907 0.36 -2.3 1,998,251 + MPMX20_01907 0.36 +0.3 1,998,401 + MPMX20_01907 0.46 -0.4 1,998,409 - MPMX20_01907 0.47 -1.1 1,998,416 - MPMX20_01907 0.47 +0.8 1,998,485 - MPMX20_01907 0.52 +1.0 1,998,498 + MPMX20_01907 0.53 -0.6 1,998,540 - MPMX20_01907 0.56 -1.9 1,998,600 + MPMX20_01907 0.60 +0.7 1,998,608 - MPMX20_01907 0.61 +0.2 1,998,662 + MPMX20_01907 0.64 -0.9 1,998,789 + MPMX20_01907 0.73 -0.9 1,998,838 + MPMX20_01907 0.77 -0.4 1,998,843 + MPMX20_01907 0.77 +0.4 1,998,846 - MPMX20_01907 0.77 +0.6 1,998,856 - MPMX20_01907 0.78 -2.0 1,998,900 + MPMX20_01907 0.81 +0.0 1,998,982 - MPMX20_01907 0.87 -1.1 1,999,035 - -0.8 1,999,037 - +1.0 1,999,075 + -0.1 1,999,090 - -0.2 1,999,164 + +0.2 1,999,164 + -2.4 1,999,164 + -1.7 1,999,164 + -2.4 1,999,164 + -2.5 1,999,164 + +0.2 1,999,164 + -0.2 1,999,164 + -1.1 1,999,172 - +0.3 1,999,172 - -1.5 1,999,172 - -0.4 1,999,172 - -1.8 1,999,261 + -1.1 1,999,279 + -0.8 1,999,281 + +0.8 1,999,597 - MPMX20_01908 0.47 -1.1 1,999,634 - MPMX20_01908 0.52 -1.7 1,999,729 + MPMX20_01908 0.64 -0.7 1,999,731 + MPMX20_01908 0.64 +2.0 1,999,742 - MPMX20_01908 0.66 -3.4 1,999,755 + MPMX20_01908 0.68 -1.2 1,999,789 + MPMX20_01908 0.72 +0.5 1,999,799 + MPMX20_01908 0.73 -0.6 1,999,807 - MPMX20_01908 0.74 -1.4 1,999,824 + MPMX20_01908 0.77 -2.7 1,999,855 - MPMX20_01908 0.81 +0.5 1,999,950 + -1.2 1,999,958 - -2.0 1,999,969 + +1.8 2,000,022 + -0.9 2,000,105 - -0.0 2,000,163 + MPMX20_01909 0.11 +0.4 2,000,201 + MPMX20_01909 0.13 +0.7 2,000,217 - MPMX20_01909 0.15 +0.9 2,000,325 - MPMX20_01909 0.22 +1.8 2,000,488 + MPMX20_01909 0.34 +0.4 2,000,559 + MPMX20_01909 0.39 -0.6 2,000,601 - MPMX20_01909 0.42 -0.1 2,000,617 + MPMX20_01909 0.43 +0.9 2,000,625 - MPMX20_01909 0.44 -1.9 2,000,725 + MPMX20_01909 0.51 +3.1 2,000,725 + MPMX20_01909 0.51 +1.4 2,000,733 - MPMX20_01909 0.52 +0.4 2,000,733 - MPMX20_01909 0.52 -0.8 2,000,733 - MPMX20_01909 0.52 -0.4 2,000,733 - MPMX20_01909 0.52 -3.1 2,000,733 - MPMX20_01909 0.52 -0.4 2,000,733 - MPMX20_01909 0.52 +1.6 2,000,733 - MPMX20_01909 0.52 -0.3 2,000,733 - MPMX20_01909 0.52 -0.6 2,000,777 - MPMX20_01909 0.55 +2.4 2,000,814 + MPMX20_01909 0.57 -1.3 2,000,814 + MPMX20_01909 0.57 -2.7 2,000,814 + MPMX20_01909 0.57 +0.8 2,000,822 - MPMX20_01909 0.58 +3.2 2,000,824 + MPMX20_01909 0.58 +1.5 2,000,832 - MPMX20_01909 0.59 -0.6 2,000,832 - MPMX20_01909 0.59 -0.6 2,000,832 - MPMX20_01909 0.59 -1.7 2,000,832 - MPMX20_01909 0.59 +1.2 2,000,852 + MPMX20_01909 0.60 -1.1 2,000,865 - MPMX20_01909 0.61 -0.8 2,000,865 - MPMX20_01909 0.61 +1.4 2,000,874 + MPMX20_01909 0.62 +0.7 2,000,874 + MPMX20_01909 0.62 -2.5 2,000,874 + MPMX20_01909 0.62 -1.1 2,000,874 + MPMX20_01909 0.62 -0.3 2,000,874 + MPMX20_01909 0.62 -0.8 2,000,882 - MPMX20_01909 0.62 +0.5 2,000,882 - MPMX20_01909 0.62 +0.1 2,000,928 + MPMX20_01909 0.66 -0.3 2,000,984 + MPMX20_01909 0.70 -0.4
Or see this region's nucleotide sequence